HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-DEC-04 1YBM TITLE X-RAY STRUCTURE OF SELENOMETHIONYL GENE PRODUCT FROM ARABIDOPSIS TITLE 2 THALIANA AT5G02240 IN SPACE GROUP P21212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNKNOWN PROTEIN AT5G02240; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G02240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-17 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CESG, PSI, CENTER KEYWDS 2 FOR EUKARYOTIC STRUCTURAL GENOMICS, NADP, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 14-FEB-24 1YBM 1 REMARK SEQADV REVDAT 4 11-OCT-17 1YBM 1 REMARK REVDAT 3 24-FEB-09 1YBM 1 VERSN REVDAT 2 12-FEB-08 1YBM 1 REMARK REVDAT 1 18-JAN-05 1YBM 0 JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) JRNL TITL X-RAY STRUCTURE OF SELENOMETHIONYL GENE PRODUCT FROM JRNL TITL 2 ARABIDOPSIS THALIANA AT5G02240 IN SPACE GROUP P21212 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 29855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.108 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53900 REMARK 3 B22 (A**2) : 1.58900 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3834 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5196 ; 1.643 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.592 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;36.884 ;25.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;15.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2804 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1861 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2578 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 3.220 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3848 ; 4.412 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1531 ; 6.383 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 8.126 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 80 6 REMARK 3 1 B 2 B 80 6 REMARK 3 2 A 102 A 253 6 REMARK 3 2 B 102 B 253 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1734 ; 0.39 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1734 ; 6.17 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, MOLPROBITY USED TO ASSIST IN FINAL MODEL BUILDING REMARK 4 REMARK 4 1YBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935, 0.97904, 0.96389 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29937 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.096 REMARK 200 RESOLUTION RANGE LOW (A) : 29.087 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7450 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.125 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 24 PERCENT PEG 4K, REMARK 280 0.136 M SODIUM MALONATE, 0.10 M BISTRIS, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.31700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.64300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.31700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.64300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 85 REMARK 465 GLY A 86 REMARK 465 PHE A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 THR A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 ARG A 94 REMARK 465 PRO B 85 REMARK 465 GLY B 86 REMARK 465 PHE B 87 REMARK 465 ASP B 88 REMARK 465 PRO B 89 REMARK 465 THR B 90 REMARK 465 LYS B 91 REMARK 465 GLY B 92 REMARK 465 GLY B 93 REMARK 465 ARG B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 165 O HOH A 531 1.86 REMARK 500 O HOH B 445 O HOH B 503 1.97 REMARK 500 O HOH A 470 O HOH A 512 1.99 REMARK 500 O HOH B 470 O HOH B 557 2.05 REMARK 500 O HOH B 467 O HOH B 468 2.05 REMARK 500 OE1 GLN A 197 O HOH A 499 2.14 REMARK 500 O HOH B 472 O HOH B 596 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 512 O HOH B 567 3646 1.93 REMARK 500 O HOH A 466 O HOH B 566 3646 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 30.52 -82.20 REMARK 500 GLU A 100 157.10 -48.02 REMARK 500 PRO A 105 -34.10 -37.05 REMARK 500 TRP A 110 -71.58 -83.91 REMARK 500 HIS A 141 131.89 -39.31 REMARK 500 TRP B 110 -73.47 -89.74 REMARK 500 THR B 200 57.35 -119.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XQ6 RELATED DB: PDB REMARK 900 1XQ6 IS THE NATIVE STRUCTURE OF AT5G02240 IN SPACE GROUP P21 REMARK 900 RELATED ID: GO.23662 RELATED DB: TARGETDB DBREF 1YBM A 2 253 UNP Q94EG6 Y5224_ARATH 2 253 DBREF 1YBM B 2 253 UNP Q94EG6 Y5224_ARATH 2 253 SEQADV 1YBM SER A 1 UNP Q94EG6 CLONING ARTIFACT SEQADV 1YBM SER B 1 UNP Q94EG6 CLONING ARTIFACT SEQRES 1 A 253 SER ALA ASN LEU PRO THR VAL LEU VAL THR GLY ALA SER SEQRES 2 A 253 GLY ARG THR GLY GLN ILE VAL TYR LYS LYS LEU LYS GLU SEQRES 3 A 253 GLY SER ASP LYS PHE VAL ALA LYS GLY LEU VAL ARG SER SEQRES 4 A 253 ALA GLN GLY LYS GLU LYS ILE GLY GLY GLU ALA ASP VAL SEQRES 5 A 253 PHE ILE GLY ASP ILE THR ASP ALA ASP SER ILE ASN PRO SEQRES 6 A 253 ALA PHE GLN GLY ILE ASP ALA LEU VAL ILE LEU THR SER SEQRES 7 A 253 ALA VAL PRO LYS MET LYS PRO GLY PHE ASP PRO THR LYS SEQRES 8 A 253 GLY GLY ARG PRO GLU PHE ILE PHE GLU ASP GLY GLN TYR SEQRES 9 A 253 PRO GLU GLN VAL ASP TRP ILE GLY GLN LYS ASN GLN ILE SEQRES 10 A 253 ASP ALA ALA LYS VAL ALA GLY VAL LYS HIS ILE VAL VAL SEQRES 11 A 253 VAL GLY SER MET GLY GLY THR ASN PRO ASP HIS PRO LEU SEQRES 12 A 253 ASN LYS LEU GLY ASN GLY ASN ILE LEU VAL TRP LYS ARG SEQRES 13 A 253 LYS ALA GLU GLN TYR LEU ALA ASP SER GLY THR PRO TYR SEQRES 14 A 253 THR ILE ILE ARG ALA GLY GLY LEU LEU ASP LYS GLU GLY SEQRES 15 A 253 GLY VAL ARG GLU LEU LEU VAL GLY LYS ASP ASP GLU LEU SEQRES 16 A 253 LEU GLN THR ASP THR LYS THR VAL PRO ARG ALA ASP VAL SEQRES 17 A 253 ALA GLU VAL CYS ILE GLN ALA LEU LEU PHE GLU GLU ALA SEQRES 18 A 253 LYS ASN LYS ALA PHE ASP LEU GLY SER LYS PRO GLU GLY SEQRES 19 A 253 THR SER THR PRO THR LYS ASP PHE LYS ALA LEU PHE SER SEQRES 20 A 253 GLN VAL THR SER ARG PHE SEQRES 1 B 253 SER ALA ASN LEU PRO THR VAL LEU VAL THR GLY ALA SER SEQRES 2 B 253 GLY ARG THR GLY GLN ILE VAL TYR LYS LYS LEU LYS GLU SEQRES 3 B 253 GLY SER ASP LYS PHE VAL ALA LYS GLY LEU VAL ARG SER SEQRES 4 B 253 ALA GLN GLY LYS GLU LYS ILE GLY GLY GLU ALA ASP VAL SEQRES 5 B 253 PHE ILE GLY ASP ILE THR ASP ALA ASP SER ILE ASN PRO SEQRES 6 B 253 ALA PHE GLN GLY ILE ASP ALA LEU VAL ILE LEU THR SER SEQRES 7 B 253 ALA VAL PRO LYS MET LYS PRO GLY PHE ASP PRO THR LYS SEQRES 8 B 253 GLY GLY ARG PRO GLU PHE ILE PHE GLU ASP GLY GLN TYR SEQRES 9 B 253 PRO GLU GLN VAL ASP TRP ILE GLY GLN LYS ASN GLN ILE SEQRES 10 B 253 ASP ALA ALA LYS VAL ALA GLY VAL LYS HIS ILE VAL VAL SEQRES 11 B 253 VAL GLY SER MET GLY GLY THR ASN PRO ASP HIS PRO LEU SEQRES 12 B 253 ASN LYS LEU GLY ASN GLY ASN ILE LEU VAL TRP LYS ARG SEQRES 13 B 253 LYS ALA GLU GLN TYR LEU ALA ASP SER GLY THR PRO TYR SEQRES 14 B 253 THR ILE ILE ARG ALA GLY GLY LEU LEU ASP LYS GLU GLY SEQRES 15 B 253 GLY VAL ARG GLU LEU LEU VAL GLY LYS ASP ASP GLU LEU SEQRES 16 B 253 LEU GLN THR ASP THR LYS THR VAL PRO ARG ALA ASP VAL SEQRES 17 B 253 ALA GLU VAL CYS ILE GLN ALA LEU LEU PHE GLU GLU ALA SEQRES 18 B 253 LYS ASN LYS ALA PHE ASP LEU GLY SER LYS PRO GLU GLY SEQRES 19 B 253 THR SER THR PRO THR LYS ASP PHE LYS ALA LEU PHE SER SEQRES 20 B 253 GLN VAL THR SER ARG PHE HET NAP A 400 48 HET NAP B 401 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *369(H2 O) HELIX 1 1 GLY A 14 GLY A 27 1 14 HELIX 2 2 SER A 39 ILE A 46 1 8 HELIX 3 3 ASP A 59 GLN A 68 1 10 HELIX 4 4 TYR A 104 ASP A 109 1 6 HELIX 5 5 TRP A 110 ALA A 123 1 14 HELIX 6 6 HIS A 141 GLY A 149 5 9 HELIX 7 7 ASN A 150 SER A 165 1 16 HELIX 8 8 ASP A 193 THR A 198 5 6 HELIX 9 9 ARG A 205 PHE A 218 1 14 HELIX 10 10 GLU A 219 LYS A 222 5 4 HELIX 11 11 ASP A 241 GLN A 248 1 8 HELIX 12 12 GLY B 14 GLY B 27 1 14 HELIX 13 13 SER B 39 ILE B 46 1 8 HELIX 14 14 ASP B 59 SER B 62 5 4 HELIX 15 15 ILE B 63 GLN B 68 1 6 HELIX 16 16 TYR B 104 ASP B 109 1 6 HELIX 17 17 TRP B 110 ALA B 123 1 14 HELIX 18 18 HIS B 141 GLY B 149 5 9 HELIX 19 19 ASN B 150 ASP B 164 1 15 HELIX 20 20 ASP B 193 THR B 198 5 6 HELIX 21 21 ARG B 205 PHE B 218 1 14 HELIX 22 22 GLU B 219 LYS B 222 5 4 HELIX 23 23 ASP B 241 VAL B 249 1 9 SHEET 1 A 8 VAL A 52 ILE A 54 0 SHEET 2 A 8 VAL A 32 VAL A 37 1 N GLY A 35 O PHE A 53 SHEET 3 A 8 THR A 6 THR A 10 1 N VAL A 7 O VAL A 32 SHEET 4 A 8 ALA A 72 ILE A 75 1 O VAL A 74 N LEU A 8 SHEET 5 A 8 HIS A 127 SER A 133 1 O VAL A 129 N ILE A 75 SHEET 6 A 8 TYR A 169 ALA A 174 1 O ILE A 172 N GLY A 132 SHEET 7 A 8 LYS A 224 SER A 230 1 O PHE A 226 N ARG A 173 SHEET 8 A 8 LEU A 187 GLY A 190 -1 N GLY A 190 O ASP A 227 SHEET 1 B 2 LYS A 82 MET A 83 0 SHEET 2 B 2 PHE A 97 ILE A 98 -1 O ILE A 98 N LYS A 82 SHEET 1 C 2 GLY A 176 LEU A 178 0 SHEET 2 C 2 THR A 202 PRO A 204 1 O VAL A 203 N GLY A 176 SHEET 1 D 8 VAL B 52 ILE B 54 0 SHEET 2 D 8 VAL B 32 VAL B 37 1 N GLY B 35 O PHE B 53 SHEET 3 D 8 THR B 6 THR B 10 1 N VAL B 9 O LYS B 34 SHEET 4 D 8 ALA B 72 ILE B 75 1 O VAL B 74 N LEU B 8 SHEET 5 D 8 HIS B 127 SER B 133 1 O VAL B 129 N LEU B 73 SHEET 6 D 8 TYR B 169 ALA B 174 1 O ILE B 172 N GLY B 132 SHEET 7 D 8 LYS B 224 SER B 230 1 O PHE B 226 N ARG B 173 SHEET 8 D 8 LEU B 187 GLY B 190 -1 N GLY B 190 O ASP B 227 SHEET 1 E 2 LYS B 82 MET B 83 0 SHEET 2 E 2 PHE B 97 ILE B 98 -1 O ILE B 98 N LYS B 82 SHEET 1 F 2 GLY B 176 LEU B 178 0 SHEET 2 F 2 THR B 202 PRO B 204 1 O VAL B 203 N GLY B 176 SITE 1 AC1 26 SER A 13 GLY A 14 ARG A 15 THR A 16 SITE 2 AC1 26 ARG A 38 ASP A 56 ILE A 57 LEU A 76 SITE 3 AC1 26 THR A 77 SER A 78 VAL A 80 GLN A 103 SITE 4 AC1 26 VAL A 108 VAL A 131 GLY A 132 SER A 133 SITE 5 AC1 26 LYS A 155 ALA A 174 GLY A 175 GLY A 176 SITE 6 AC1 26 LEU A 177 ARG A 205 HOH A 403 HOH A 404 SITE 7 AC1 26 HOH A 409 HOH A 458 SITE 1 AC2 30 SER B 13 GLY B 14 ARG B 15 THR B 16 SITE 2 AC2 30 ARG B 38 ASP B 56 ILE B 57 LEU B 76 SITE 3 AC2 30 THR B 77 SER B 78 VAL B 80 GLN B 103 SITE 4 AC2 30 VAL B 131 GLY B 132 SER B 133 LYS B 155 SITE 5 AC2 30 ALA B 174 GLY B 175 GLY B 176 LEU B 177 SITE 6 AC2 30 ARG B 205 HOH B 402 HOH B 403 HOH B 404 SITE 7 AC2 30 HOH B 422 HOH B 434 HOH B 507 HOH B 510 SITE 8 AC2 30 HOH B 519 HOH B 540 CRYST1 74.634 77.286 92.864 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010800 0.00000