data_1YBO # _entry.id 1YBO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YBO RCSB RCSB031350 WWPDB D_1000031350 # _pdbx_database_status.entry_id 1YBO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-12-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grembecka, J.' 1 'Cooper, D.R.' 2 'Cierpicki, T.' 3 'Kang, B.S.' 4 'Devedjiev, Y.' 5 'Derewenda, Z.' 6 # _citation.id primary _citation.title 'The binding of the PDZ tandem of syntenin to target proteins' _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 3674 _citation.page_last 3683 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16533050 _citation.pdbx_database_id_DOI 10.1021/bi052225y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Grembecka, J.' 1 primary 'Cierpicki, T.' 2 primary 'Devedjiev, Y.' 3 primary 'Derewenda, U.' 4 primary 'Kang, B.S.' 5 primary 'Bushweller, J.H.' 6 primary 'Derewenda, Z.S.' 7 # _cell.entry_id 1YBO _cell.length_a 72.322 _cell.length_b 72.322 _cell.length_c 125.921 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YBO _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Syntenin 1' 18018.688 2 ? ? ? ? 2 polymer syn Syndecan-4 1972.329 2 ? ? ? ? 3 water nat water 18.015 190 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Syndecan binding protein 1, Melanoma differentiation associated protein-9, Mda-9, Scaffold protein Pbp1, Pro-TGF-alpha cytoplasmic domain-interacting protein 18, TACIP18 ; 2 'Amphiglycan, SYND4, Ryudocan core protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMDPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKIT MTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI TIMPAF ; ;GAMDPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKIT MTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI TIMPAF ; A,B ? 2 'polypeptide(L)' no no LGKKPIYKKAPTNEFYA LGKKPIYKKAPTNEFYA C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 PRO n 1 6 ARG n 1 7 GLU n 1 8 VAL n 1 9 ILE n 1 10 LEU n 1 11 CYS n 1 12 LYS n 1 13 ASP n 1 14 GLN n 1 15 ASP n 1 16 GLY n 1 17 LYS n 1 18 ILE n 1 19 GLY n 1 20 LEU n 1 21 ARG n 1 22 LEU n 1 23 LYS n 1 24 SER n 1 25 ILE n 1 26 ASP n 1 27 ASN n 1 28 GLY n 1 29 ILE n 1 30 PHE n 1 31 VAL n 1 32 GLN n 1 33 LEU n 1 34 VAL n 1 35 GLN n 1 36 ALA n 1 37 ASN n 1 38 SER n 1 39 PRO n 1 40 ALA n 1 41 SER n 1 42 LEU n 1 43 VAL n 1 44 GLY n 1 45 LEU n 1 46 ARG n 1 47 PHE n 1 48 GLY n 1 49 ASP n 1 50 GLN n 1 51 VAL n 1 52 LEU n 1 53 GLN n 1 54 ILE n 1 55 ASN n 1 56 GLY n 1 57 GLU n 1 58 ASN n 1 59 CYS n 1 60 ALA n 1 61 GLY n 1 62 TRP n 1 63 SER n 1 64 SER n 1 65 ASP n 1 66 LYS n 1 67 ALA n 1 68 HIS n 1 69 LYS n 1 70 VAL n 1 71 LEU n 1 72 LYS n 1 73 GLN n 1 74 ALA n 1 75 PHE n 1 76 GLY n 1 77 GLU n 1 78 LYS n 1 79 ILE n 1 80 THR n 1 81 MET n 1 82 THR n 1 83 ILE n 1 84 ARG n 1 85 ASP n 1 86 ARG n 1 87 PRO n 1 88 PHE n 1 89 GLU n 1 90 ARG n 1 91 THR n 1 92 ILE n 1 93 THR n 1 94 MET n 1 95 HIS n 1 96 LYS n 1 97 ASP n 1 98 SER n 1 99 THR n 1 100 GLY n 1 101 HIS n 1 102 VAL n 1 103 GLY n 1 104 PHE n 1 105 ILE n 1 106 PHE n 1 107 LYS n 1 108 ASN n 1 109 GLY n 1 110 LYS n 1 111 ILE n 1 112 THR n 1 113 SER n 1 114 ILE n 1 115 VAL n 1 116 LYS n 1 117 ASP n 1 118 SER n 1 119 SER n 1 120 ALA n 1 121 ALA n 1 122 ARG n 1 123 ASN n 1 124 GLY n 1 125 LEU n 1 126 LEU n 1 127 THR n 1 128 GLU n 1 129 HIS n 1 130 ASN n 1 131 ILE n 1 132 CYS n 1 133 GLU n 1 134 ILE n 1 135 ASN n 1 136 GLY n 1 137 GLN n 1 138 ASN n 1 139 VAL n 1 140 ILE n 1 141 GLY n 1 142 LEU n 1 143 LYS n 1 144 ASP n 1 145 SER n 1 146 GLN n 1 147 ILE n 1 148 ALA n 1 149 ASP n 1 150 ILE n 1 151 LEU n 1 152 SER n 1 153 THR n 1 154 SER n 1 155 GLY n 1 156 THR n 1 157 VAL n 1 158 VAL n 1 159 THR n 1 160 ILE n 1 161 THR n 1 162 ILE n 1 163 MET n 1 164 PRO n 1 165 ALA n 1 166 PHE n 2 1 LEU n 2 2 GLY n 2 3 LYS n 2 4 LYS n 2 5 PRO n 2 6 ILE n 2 7 TYR n 2 8 LYS n 2 9 LYS n 2 10 ALA n 2 11 PRO n 2 12 THR n 2 13 ASN n 2 14 GLU n 2 15 PHE n 2 16 TYR n 2 17 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SDCBP, MDA9, SYCL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGST-parallel-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthesized peptide cooresponding to the C-terminus of syndecan' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SDCB1_HUMAN O00560 1 ;REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD RPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA F ; 113 ? 2 UNP SDC4_HUMAN P31431 2 LGKKPIYKKAPTNEFYA 182 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YBO A 6 ? 166 ? O00560 113 ? 273 ? 113 273 2 1 1YBO B 6 ? 166 ? O00560 113 ? 273 ? 113 273 3 2 1YBO C 1 ? 17 ? P31431 182 ? 198 ? -10 6 4 2 1YBO D 1 ? 17 ? P31431 182 ? 198 ? -10 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YBO GLY A 1 ? UNP O00560 ? ? 'CLONING ARTIFACT' 108 1 1 1YBO ALA A 2 ? UNP O00560 ? ? 'CLONING ARTIFACT' 109 2 1 1YBO MET A 3 ? UNP O00560 ? ? 'CLONING ARTIFACT' 110 3 1 1YBO ASP A 4 ? UNP O00560 ? ? 'CLONING ARTIFACT' 111 4 1 1YBO PRO A 5 ? UNP O00560 ? ? 'CLONING ARTIFACT' 112 5 2 1YBO GLY B 1 ? UNP O00560 ? ? 'CLONING ARTIFACT' 108 6 2 1YBO ALA B 2 ? UNP O00560 ? ? 'CLONING ARTIFACT' 109 7 2 1YBO MET B 3 ? UNP O00560 ? ? 'CLONING ARTIFACT' 110 8 2 1YBO ASP B 4 ? UNP O00560 ? ? 'CLONING ARTIFACT' 111 9 2 1YBO PRO B 5 ? UNP O00560 ? ? 'CLONING ARTIFACT' 112 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1YBO # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 49.7 _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2M NH4Cl, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-04-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97960 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_wavelength_list 0.97960 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C # _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 23083 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_redundancy 8.30 _reflns.pdbx_chi_squared 1.388 _reflns.entry_id 1YBO _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.3 _reflns.B_iso_Wilson_estimate 25.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 2.07 _reflns_shell.d_res_high 2.00 _reflns_shell.number_unique_all 2282 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.283 _reflns_shell.pdbx_redundancy 7.9 _reflns_shell.pdbx_chi_squared 1.208 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 8.31 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F ? _refine.ls_percent_reflns_obs 99.280 _refine.ls_number_reflns_obs 15391 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.197 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.273 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 800 _refine.B_iso_mean 25.247 _refine.aniso_B[1][1] -0.530 _refine.aniso_B[2][2] -0.530 _refine.aniso_B[3][3] 1.050 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.868 _refine.overall_SU_R_Cruickshank_DPI 0.403 _refine.pdbx_overall_ESU_R_Free 0.280 _refine.overall_SU_ML 0.189 _refine.overall_SU_B 14.260 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.entry_id 1YBO _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1N99 _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2580 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 2770 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2613 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2423 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3520 2.613 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 5654 1.484 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 333 5.735 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 112 40.271 25.089 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 482 14.390 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 22.434 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 412 0.096 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2894 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 490 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 460 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 2391 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1192 0.159 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1562 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 166 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 1 0.015 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 24 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 55 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 12 0.274 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2164 1.022 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 704 0.093 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2684 0.928 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1060 1.477 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 836 2.246 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.910 _refine_ls_shell.number_reflns_R_work 1068 _refine_ls_shell.R_factor_R_work 0.184 _refine_ls_shell.R_factor_R_free 0.31 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YBO _struct.title 'Crystal structure of the PDZ tandem of human syntenin with syndecan peptide' _struct.pdbx_descriptor 'Syntenin 1, Syndecan-4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'PDZ domain, scaffolding protein, adhesion complex, STRUCTURAL PROTEIN' _struct_keywords.entry_id 1YBO _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The dimer in the assymetric unit is the biological assembly' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 38 ? VAL A 43 ? SER A 145 VAL A 150 1 ? 6 HELX_P HELX_P2 2 SER A 63 ? ALA A 74 ? SER A 170 ALA A 181 1 ? 12 HELX_P HELX_P3 3 SER A 118 ? ASN A 123 ? SER A 225 ASN A 230 1 ? 6 HELX_P HELX_P4 4 LYS A 143 ? THR A 153 ? LYS A 250 THR A 260 1 ? 11 HELX_P HELX_P5 5 SER B 38 ? VAL B 43 ? SER B 145 VAL B 150 1 ? 6 HELX_P HELX_P6 6 SER B 63 ? ALA B 74 ? SER B 170 ALA B 181 1 ? 12 HELX_P HELX_P7 7 SER B 118 ? ASN B 123 ? SER B 225 ASN B 230 1 ? 6 HELX_P HELX_P8 8 LYS B 143 ? SER B 154 ? LYS B 250 SER B 261 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 1 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.87 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 4 ? D ? 6 ? E ? 5 ? F ? 4 ? G ? 4 ? H ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel H 4 5 ? anti-parallel H 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 6 ? CYS A 11 ? ARG A 113 CYS A 118 A 2 LYS A 78 ? ARG A 84 ? LYS A 185 ARG A 191 A 3 GLN A 50 ? ILE A 54 ? GLN A 157 ILE A 161 A 4 GLY A 28 ? VAL A 34 ? GLY A 135 VAL A 141 A 5 LEU A 20 ? ILE A 25 ? LEU A 127 ILE A 132 B 1 ARG A 6 ? CYS A 11 ? ARG A 113 CYS A 118 B 2 LYS A 78 ? ARG A 84 ? LYS A 185 ARG A 191 B 3 GLN A 50 ? ILE A 54 ? GLN A 157 ILE A 161 B 4 GLU A 57 ? ASN A 58 ? GLU A 164 ASN A 165 C 1 ARG A 90 ? HIS A 95 ? ARG A 197 HIS A 202 C 2 VAL A 157 ? PRO A 164 ? VAL A 264 PRO A 271 C 3 HIS A 129 ? ILE A 134 ? HIS A 236 ILE A 241 C 4 GLN A 137 ? ASN A 138 ? GLN A 244 ASN A 245 D 1 ARG A 90 ? HIS A 95 ? ARG A 197 HIS A 202 D 2 VAL A 157 ? PRO A 164 ? VAL A 264 PRO A 271 D 3 HIS A 129 ? ILE A 134 ? HIS A 236 ILE A 241 D 4 LYS A 110 ? ILE A 114 ? LYS A 217 ILE A 221 D 5 PHE A 104 ? LYS A 107 ? PHE A 211 LYS A 214 D 6 PHE C 15 ? ALA C 17 ? PHE C 4 ALA C 6 E 1 ARG B 6 ? CYS B 11 ? ARG B 113 CYS B 118 E 2 LYS B 78 ? ARG B 84 ? LYS B 185 ARG B 191 E 3 GLN B 50 ? ILE B 54 ? GLN B 157 ILE B 161 E 4 GLY B 28 ? VAL B 34 ? GLY B 135 VAL B 141 E 5 LEU B 20 ? ILE B 25 ? LEU B 127 ILE B 132 F 1 ARG B 6 ? CYS B 11 ? ARG B 113 CYS B 118 F 2 LYS B 78 ? ARG B 84 ? LYS B 185 ARG B 191 F 3 GLN B 50 ? ILE B 54 ? GLN B 157 ILE B 161 F 4 GLU B 57 ? ASN B 58 ? GLU B 164 ASN B 165 G 1 ARG B 90 ? HIS B 95 ? ARG B 197 HIS B 202 G 2 VAL B 157 ? PRO B 164 ? VAL B 264 PRO B 271 G 3 HIS B 129 ? ILE B 134 ? HIS B 236 ILE B 241 G 4 GLN B 137 ? ASN B 138 ? GLN B 244 ASN B 245 H 1 ARG B 90 ? HIS B 95 ? ARG B 197 HIS B 202 H 2 VAL B 157 ? PRO B 164 ? VAL B 264 PRO B 271 H 3 HIS B 129 ? ILE B 134 ? HIS B 236 ILE B 241 H 4 LYS B 110 ? ILE B 114 ? LYS B 217 ILE B 221 H 5 PHE B 104 ? LYS B 107 ? PHE B 211 LYS B 214 H 6 PHE D 15 ? TYR D 16 ? PHE D 4 TYR D 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 10 ? N LEU A 117 O ILE A 79 ? O ILE A 186 A 2 3 O ARG A 84 ? O ARG A 191 N GLN A 50 ? N GLN A 157 A 3 4 O VAL A 51 ? O VAL A 158 N ILE A 29 ? N ILE A 136 A 4 5 O PHE A 30 ? O PHE A 137 N LYS A 23 ? N LYS A 130 B 1 2 N LEU A 10 ? N LEU A 117 O ILE A 79 ? O ILE A 186 B 2 3 O ARG A 84 ? O ARG A 191 N GLN A 50 ? N GLN A 157 B 3 4 N ILE A 54 ? N ILE A 161 O GLU A 57 ? O GLU A 164 C 1 2 N ILE A 92 ? N ILE A 199 O ILE A 160 ? O ILE A 267 C 2 3 O THR A 161 ? O THR A 268 N CYS A 132 ? N CYS A 239 C 3 4 N ILE A 134 ? N ILE A 241 O GLN A 137 ? O GLN A 244 D 1 2 N ILE A 92 ? N ILE A 199 O ILE A 160 ? O ILE A 267 D 2 3 O THR A 161 ? O THR A 268 N CYS A 132 ? N CYS A 239 D 3 4 O HIS A 129 ? O HIS A 236 N ILE A 111 ? N ILE A 218 D 4 5 O SER A 113 ? O SER A 220 N ILE A 105 ? N ILE A 212 D 5 6 N PHE A 104 ? N PHE A 211 O ALA C 17 ? O ALA C 6 E 1 2 N ARG B 6 ? N ARG B 113 O ILE B 83 ? O ILE B 190 E 2 3 O ARG B 84 ? O ARG B 191 N GLN B 50 ? N GLN B 157 E 3 4 O VAL B 51 ? O VAL B 158 N ILE B 29 ? N ILE B 136 E 4 5 O GLN B 32 ? O GLN B 139 N ARG B 21 ? N ARG B 128 F 1 2 N ARG B 6 ? N ARG B 113 O ILE B 83 ? O ILE B 190 F 2 3 O ARG B 84 ? O ARG B 191 N GLN B 50 ? N GLN B 157 F 3 4 N ILE B 54 ? N ILE B 161 O GLU B 57 ? O GLU B 164 G 1 2 N ILE B 92 ? N ILE B 199 O ILE B 160 ? O ILE B 267 G 2 3 O MET B 163 ? O MET B 270 N ASN B 130 ? N ASN B 237 G 3 4 N ILE B 134 ? N ILE B 241 O GLN B 137 ? O GLN B 244 H 1 2 N ILE B 92 ? N ILE B 199 O ILE B 160 ? O ILE B 267 H 2 3 O MET B 163 ? O MET B 270 N ASN B 130 ? N ASN B 237 H 3 4 O HIS B 129 ? O HIS B 236 N ILE B 111 ? N ILE B 218 H 4 5 O SER B 113 ? O SER B 220 N ILE B 105 ? N ILE B 212 H 5 6 N PHE B 106 ? N PHE B 213 O PHE D 15 ? O PHE D 4 # _atom_sites.entry_id 1YBO _atom_sites.fract_transf_matrix[1][1] 0.013827 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013827 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007941 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 108 ? ? ? A . n A 1 2 ALA 2 109 ? ? ? A . n A 1 3 MET 3 110 ? ? ? A . n A 1 4 ASP 4 111 111 ASP ASP A . n A 1 5 PRO 5 112 112 PRO PRO A . n A 1 6 ARG 6 113 113 ARG ARG A . n A 1 7 GLU 7 114 114 GLU GLU A . n A 1 8 VAL 8 115 115 VAL VAL A . n A 1 9 ILE 9 116 116 ILE ILE A . n A 1 10 LEU 10 117 117 LEU LEU A . n A 1 11 CYS 11 118 118 CYS CYS A . n A 1 12 LYS 12 119 119 LYS LYS A . n A 1 13 ASP 13 120 120 ASP ASP A . n A 1 14 GLN 14 121 121 GLN GLN A . n A 1 15 ASP 15 122 122 ASP ASP A . n A 1 16 GLY 16 123 123 GLY GLY A . n A 1 17 LYS 17 124 124 LYS LYS A . n A 1 18 ILE 18 125 125 ILE ILE A . n A 1 19 GLY 19 126 126 GLY GLY A . n A 1 20 LEU 20 127 127 LEU LEU A . n A 1 21 ARG 21 128 128 ARG ARG A . n A 1 22 LEU 22 129 129 LEU LEU A . n A 1 23 LYS 23 130 130 LYS LYS A . n A 1 24 SER 24 131 131 SER SER A . n A 1 25 ILE 25 132 132 ILE ILE A . n A 1 26 ASP 26 133 133 ASP ASP A . n A 1 27 ASN 27 134 134 ASN ASN A . n A 1 28 GLY 28 135 135 GLY GLY A . n A 1 29 ILE 29 136 136 ILE ILE A . n A 1 30 PHE 30 137 137 PHE PHE A . n A 1 31 VAL 31 138 138 VAL VAL A . n A 1 32 GLN 32 139 139 GLN GLN A . n A 1 33 LEU 33 140 140 LEU LEU A . n A 1 34 VAL 34 141 141 VAL VAL A . n A 1 35 GLN 35 142 142 GLN GLN A . n A 1 36 ALA 36 143 143 ALA ALA A . n A 1 37 ASN 37 144 144 ASN ASN A . n A 1 38 SER 38 145 145 SER SER A . n A 1 39 PRO 39 146 146 PRO PRO A . n A 1 40 ALA 40 147 147 ALA ALA A . n A 1 41 SER 41 148 148 SER SER A . n A 1 42 LEU 42 149 149 LEU LEU A . n A 1 43 VAL 43 150 150 VAL VAL A . n A 1 44 GLY 44 151 151 GLY GLY A . n A 1 45 LEU 45 152 152 LEU LEU A . n A 1 46 ARG 46 153 153 ARG ARG A . n A 1 47 PHE 47 154 154 PHE PHE A . n A 1 48 GLY 48 155 155 GLY GLY A . n A 1 49 ASP 49 156 156 ASP ASP A . n A 1 50 GLN 50 157 157 GLN GLN A . n A 1 51 VAL 51 158 158 VAL VAL A . n A 1 52 LEU 52 159 159 LEU LEU A . n A 1 53 GLN 53 160 160 GLN GLN A . n A 1 54 ILE 54 161 161 ILE ILE A . n A 1 55 ASN 55 162 162 ASN ASN A . n A 1 56 GLY 56 163 163 GLY GLY A . n A 1 57 GLU 57 164 164 GLU GLU A . n A 1 58 ASN 58 165 165 ASN ASN A . n A 1 59 CYS 59 166 166 CYS CYS A . n A 1 60 ALA 60 167 167 ALA ALA A . n A 1 61 GLY 61 168 168 GLY GLY A . n A 1 62 TRP 62 169 169 TRP TRP A . n A 1 63 SER 63 170 170 SER SER A . n A 1 64 SER 64 171 171 SER SER A . n A 1 65 ASP 65 172 172 ASP ASP A . n A 1 66 LYS 66 173 173 LYS LYS A . n A 1 67 ALA 67 174 174 ALA ALA A . n A 1 68 HIS 68 175 175 HIS HIS A . n A 1 69 LYS 69 176 176 LYS LYS A . n A 1 70 VAL 70 177 177 VAL VAL A . n A 1 71 LEU 71 178 178 LEU LEU A . n A 1 72 LYS 72 179 179 LYS LYS A . n A 1 73 GLN 73 180 180 GLN GLN A . n A 1 74 ALA 74 181 181 ALA ALA A . n A 1 75 PHE 75 182 182 PHE PHE A . n A 1 76 GLY 76 183 183 GLY GLY A . n A 1 77 GLU 77 184 184 GLU GLU A . n A 1 78 LYS 78 185 185 LYS LYS A . n A 1 79 ILE 79 186 186 ILE ILE A . n A 1 80 THR 80 187 187 THR THR A . n A 1 81 MET 81 188 188 MET MET A . n A 1 82 THR 82 189 189 THR THR A . n A 1 83 ILE 83 190 190 ILE ILE A . n A 1 84 ARG 84 191 191 ARG ARG A . n A 1 85 ASP 85 192 192 ASP ASP A . n A 1 86 ARG 86 193 193 ARG ARG A . n A 1 87 PRO 87 194 194 PRO PRO A . n A 1 88 PHE 88 195 195 PHE PHE A . n A 1 89 GLU 89 196 196 GLU GLU A . n A 1 90 ARG 90 197 197 ARG ARG A . n A 1 91 THR 91 198 198 THR THR A . n A 1 92 ILE 92 199 199 ILE ILE A . n A 1 93 THR 93 200 200 THR THR A . n A 1 94 MET 94 201 201 MET MET A . n A 1 95 HIS 95 202 202 HIS HIS A . n A 1 96 LYS 96 203 203 LYS LYS A . n A 1 97 ASP 97 204 204 ASP ASP A . n A 1 98 SER 98 205 205 SER SER A . n A 1 99 THR 99 206 206 THR THR A . n A 1 100 GLY 100 207 207 GLY GLY A . n A 1 101 HIS 101 208 208 HIS HIS A . n A 1 102 VAL 102 209 209 VAL VAL A . n A 1 103 GLY 103 210 210 GLY GLY A . n A 1 104 PHE 104 211 211 PHE PHE A . n A 1 105 ILE 105 212 212 ILE ILE A . n A 1 106 PHE 106 213 213 PHE PHE A . n A 1 107 LYS 107 214 214 LYS LYS A . n A 1 108 ASN 108 215 215 ASN ASN A . n A 1 109 GLY 109 216 216 GLY GLY A . n A 1 110 LYS 110 217 217 LYS LYS A . n A 1 111 ILE 111 218 218 ILE ILE A . n A 1 112 THR 112 219 219 THR THR A . n A 1 113 SER 113 220 220 SER SER A . n A 1 114 ILE 114 221 221 ILE ILE A . n A 1 115 VAL 115 222 222 VAL VAL A . n A 1 116 LYS 116 223 223 LYS LYS A . n A 1 117 ASP 117 224 224 ASP ASP A . n A 1 118 SER 118 225 225 SER SER A . n A 1 119 SER 119 226 226 SER SER A . n A 1 120 ALA 120 227 227 ALA ALA A . n A 1 121 ALA 121 228 228 ALA ALA A . n A 1 122 ARG 122 229 229 ARG ARG A . n A 1 123 ASN 123 230 230 ASN ASN A . n A 1 124 GLY 124 231 231 GLY GLY A . n A 1 125 LEU 125 232 232 LEU LEU A . n A 1 126 LEU 126 233 233 LEU LEU A . n A 1 127 THR 127 234 234 THR THR A . n A 1 128 GLU 128 235 235 GLU GLU A . n A 1 129 HIS 129 236 236 HIS HIS A . n A 1 130 ASN 130 237 237 ASN ASN A . n A 1 131 ILE 131 238 238 ILE ILE A . n A 1 132 CYS 132 239 239 CYS CYS A . n A 1 133 GLU 133 240 240 GLU GLU A . n A 1 134 ILE 134 241 241 ILE ILE A . n A 1 135 ASN 135 242 242 ASN ASN A . n A 1 136 GLY 136 243 243 GLY GLY A . n A 1 137 GLN 137 244 244 GLN GLN A . n A 1 138 ASN 138 245 245 ASN ASN A . n A 1 139 VAL 139 246 246 VAL VAL A . n A 1 140 ILE 140 247 247 ILE ILE A . n A 1 141 GLY 141 248 248 GLY GLY A . n A 1 142 LEU 142 249 249 LEU LEU A . n A 1 143 LYS 143 250 250 LYS LYS A . n A 1 144 ASP 144 251 251 ASP ASP A . n A 1 145 SER 145 252 252 SER SER A . n A 1 146 GLN 146 253 253 GLN GLN A . n A 1 147 ILE 147 254 254 ILE ILE A . n A 1 148 ALA 148 255 255 ALA ALA A . n A 1 149 ASP 149 256 256 ASP ASP A . n A 1 150 ILE 150 257 257 ILE ILE A . n A 1 151 LEU 151 258 258 LEU LEU A . n A 1 152 SER 152 259 259 SER SER A . n A 1 153 THR 153 260 260 THR THR A . n A 1 154 SER 154 261 261 SER SER A . n A 1 155 GLY 155 262 262 GLY GLY A . n A 1 156 THR 156 263 263 THR THR A . n A 1 157 VAL 157 264 264 VAL VAL A . n A 1 158 VAL 158 265 265 VAL VAL A . n A 1 159 THR 159 266 266 THR THR A . n A 1 160 ILE 160 267 267 ILE ILE A . n A 1 161 THR 161 268 268 THR THR A . n A 1 162 ILE 162 269 269 ILE ILE A . n A 1 163 MET 163 270 270 MET MET A . n A 1 164 PRO 164 271 271 PRO PRO A . n A 1 165 ALA 165 272 272 ALA ALA A . n A 1 166 PHE 166 273 273 PHE PHE A . n B 1 1 GLY 1 108 ? ? ? B . n B 1 2 ALA 2 109 109 ALA ALA B . n B 1 3 MET 3 110 110 MET MET B . n B 1 4 ASP 4 111 111 ASP ASP B . n B 1 5 PRO 5 112 112 PRO PRO B . n B 1 6 ARG 6 113 113 ARG ARG B . n B 1 7 GLU 7 114 114 GLU GLU B . n B 1 8 VAL 8 115 115 VAL VAL B . n B 1 9 ILE 9 116 116 ILE ILE B . n B 1 10 LEU 10 117 117 LEU LEU B . n B 1 11 CYS 11 118 118 CYS CYS B . n B 1 12 LYS 12 119 119 LYS LYS B . n B 1 13 ASP 13 120 120 ASP ASP B . n B 1 14 GLN 14 121 121 GLN GLN B . n B 1 15 ASP 15 122 122 ASP ASP B . n B 1 16 GLY 16 123 123 GLY GLY B . n B 1 17 LYS 17 124 124 LYS LYS B . n B 1 18 ILE 18 125 125 ILE ILE B . n B 1 19 GLY 19 126 126 GLY GLY B . n B 1 20 LEU 20 127 127 LEU LEU B . n B 1 21 ARG 21 128 128 ARG ARG B . n B 1 22 LEU 22 129 129 LEU LEU B . n B 1 23 LYS 23 130 130 LYS LYS B . n B 1 24 SER 24 131 131 SER SER B . n B 1 25 ILE 25 132 132 ILE ILE B . n B 1 26 ASP 26 133 133 ASP ASP B . n B 1 27 ASN 27 134 134 ASN ASN B . n B 1 28 GLY 28 135 135 GLY GLY B . n B 1 29 ILE 29 136 136 ILE ILE B . n B 1 30 PHE 30 137 137 PHE PHE B . n B 1 31 VAL 31 138 138 VAL VAL B . n B 1 32 GLN 32 139 139 GLN GLN B . n B 1 33 LEU 33 140 140 LEU LEU B . n B 1 34 VAL 34 141 141 VAL VAL B . n B 1 35 GLN 35 142 142 GLN GLN B . n B 1 36 ALA 36 143 143 ALA ALA B . n B 1 37 ASN 37 144 144 ASN ASN B . n B 1 38 SER 38 145 145 SER SER B . n B 1 39 PRO 39 146 146 PRO PRO B . n B 1 40 ALA 40 147 147 ALA ALA B . n B 1 41 SER 41 148 148 SER SER B . n B 1 42 LEU 42 149 149 LEU LEU B . n B 1 43 VAL 43 150 150 VAL VAL B . n B 1 44 GLY 44 151 151 GLY GLY B . n B 1 45 LEU 45 152 152 LEU LEU B . n B 1 46 ARG 46 153 153 ARG ARG B . n B 1 47 PHE 47 154 154 PHE PHE B . n B 1 48 GLY 48 155 155 GLY GLY B . n B 1 49 ASP 49 156 156 ASP ASP B . n B 1 50 GLN 50 157 157 GLN GLN B . n B 1 51 VAL 51 158 158 VAL VAL B . n B 1 52 LEU 52 159 159 LEU LEU B . n B 1 53 GLN 53 160 160 GLN GLN B . n B 1 54 ILE 54 161 161 ILE ILE B . n B 1 55 ASN 55 162 162 ASN ASN B . n B 1 56 GLY 56 163 163 GLY GLY B . n B 1 57 GLU 57 164 164 GLU GLU B . n B 1 58 ASN 58 165 165 ASN ASN B . n B 1 59 CYS 59 166 166 CYS CYS B . n B 1 60 ALA 60 167 167 ALA ALA B . n B 1 61 GLY 61 168 168 GLY GLY B . n B 1 62 TRP 62 169 169 TRP TRP B . n B 1 63 SER 63 170 170 SER SER B . n B 1 64 SER 64 171 171 SER SER B . n B 1 65 ASP 65 172 172 ASP ASP B . n B 1 66 LYS 66 173 173 LYS LYS B . n B 1 67 ALA 67 174 174 ALA ALA B . n B 1 68 HIS 68 175 175 HIS HIS B . n B 1 69 LYS 69 176 176 LYS LYS B . n B 1 70 VAL 70 177 177 VAL VAL B . n B 1 71 LEU 71 178 178 LEU LEU B . n B 1 72 LYS 72 179 179 LYS LYS B . n B 1 73 GLN 73 180 180 GLN GLN B . n B 1 74 ALA 74 181 181 ALA ALA B . n B 1 75 PHE 75 182 182 PHE PHE B . n B 1 76 GLY 76 183 183 GLY GLY B . n B 1 77 GLU 77 184 184 GLU GLU B . n B 1 78 LYS 78 185 185 LYS LYS B . n B 1 79 ILE 79 186 186 ILE ILE B . n B 1 80 THR 80 187 187 THR THR B . n B 1 81 MET 81 188 188 MET MET B . n B 1 82 THR 82 189 189 THR THR B . n B 1 83 ILE 83 190 190 ILE ILE B . n B 1 84 ARG 84 191 191 ARG ARG B . n B 1 85 ASP 85 192 192 ASP ASP B . n B 1 86 ARG 86 193 193 ARG ARG B . n B 1 87 PRO 87 194 194 PRO PRO B . n B 1 88 PHE 88 195 195 PHE PHE B . n B 1 89 GLU 89 196 196 GLU GLU B . n B 1 90 ARG 90 197 197 ARG ARG B . n B 1 91 THR 91 198 198 THR THR B . n B 1 92 ILE 92 199 199 ILE ILE B . n B 1 93 THR 93 200 200 THR THR B . n B 1 94 MET 94 201 201 MET MET B . n B 1 95 HIS 95 202 202 HIS HIS B . n B 1 96 LYS 96 203 203 LYS LYS B . n B 1 97 ASP 97 204 204 ASP ASP B . n B 1 98 SER 98 205 205 SER SER B . n B 1 99 THR 99 206 206 THR THR B . n B 1 100 GLY 100 207 207 GLY GLY B . n B 1 101 HIS 101 208 208 HIS HIS B . n B 1 102 VAL 102 209 209 VAL VAL B . n B 1 103 GLY 103 210 210 GLY GLY B . n B 1 104 PHE 104 211 211 PHE PHE B . n B 1 105 ILE 105 212 212 ILE ILE B . n B 1 106 PHE 106 213 213 PHE PHE B . n B 1 107 LYS 107 214 214 LYS LYS B . n B 1 108 ASN 108 215 215 ASN ASN B . n B 1 109 GLY 109 216 216 GLY GLY B . n B 1 110 LYS 110 217 217 LYS LYS B . n B 1 111 ILE 111 218 218 ILE ILE B . n B 1 112 THR 112 219 219 THR THR B . n B 1 113 SER 113 220 220 SER SER B . n B 1 114 ILE 114 221 221 ILE ILE B . n B 1 115 VAL 115 222 222 VAL VAL B . n B 1 116 LYS 116 223 223 LYS LYS B . n B 1 117 ASP 117 224 224 ASP ASP B . n B 1 118 SER 118 225 225 SER SER B . n B 1 119 SER 119 226 226 SER SER B . n B 1 120 ALA 120 227 227 ALA ALA B . n B 1 121 ALA 121 228 228 ALA ALA B . n B 1 122 ARG 122 229 229 ARG ARG B . n B 1 123 ASN 123 230 230 ASN ASN B . n B 1 124 GLY 124 231 231 GLY GLY B . n B 1 125 LEU 125 232 232 LEU LEU B . n B 1 126 LEU 126 233 233 LEU LEU B . n B 1 127 THR 127 234 234 THR THR B . n B 1 128 GLU 128 235 235 GLU GLU B . n B 1 129 HIS 129 236 236 HIS HIS B . n B 1 130 ASN 130 237 237 ASN ASN B . n B 1 131 ILE 131 238 238 ILE ILE B . n B 1 132 CYS 132 239 239 CYS CYS B . n B 1 133 GLU 133 240 240 GLU GLU B . n B 1 134 ILE 134 241 241 ILE ILE B . n B 1 135 ASN 135 242 242 ASN ASN B . n B 1 136 GLY 136 243 243 GLY GLY B . n B 1 137 GLN 137 244 244 GLN GLN B . n B 1 138 ASN 138 245 245 ASN ASN B . n B 1 139 VAL 139 246 246 VAL VAL B . n B 1 140 ILE 140 247 247 ILE ILE B . n B 1 141 GLY 141 248 248 GLY GLY B . n B 1 142 LEU 142 249 249 LEU LEU B . n B 1 143 LYS 143 250 250 LYS LYS B . n B 1 144 ASP 144 251 251 ASP ASP B . n B 1 145 SER 145 252 252 SER SER B . n B 1 146 GLN 146 253 253 GLN GLN B . n B 1 147 ILE 147 254 254 ILE ILE B . n B 1 148 ALA 148 255 255 ALA ALA B . n B 1 149 ASP 149 256 256 ASP ASP B . n B 1 150 ILE 150 257 257 ILE ILE B . n B 1 151 LEU 151 258 258 LEU LEU B . n B 1 152 SER 152 259 259 SER SER B . n B 1 153 THR 153 260 260 THR THR B . n B 1 154 SER 154 261 261 SER SER B . n B 1 155 GLY 155 262 262 GLY GLY B . n B 1 156 THR 156 263 263 THR THR B . n B 1 157 VAL 157 264 264 VAL VAL B . n B 1 158 VAL 158 265 265 VAL VAL B . n B 1 159 THR 159 266 266 THR THR B . n B 1 160 ILE 160 267 267 ILE ILE B . n B 1 161 THR 161 268 268 THR THR B . n B 1 162 ILE 162 269 269 ILE ILE B . n B 1 163 MET 163 270 270 MET MET B . n B 1 164 PRO 164 271 271 PRO PRO B . n B 1 165 ALA 165 272 272 ALA ALA B . n B 1 166 PHE 166 273 ? ? ? B . n C 2 1 LEU 1 -10 ? ? ? C . n C 2 2 GLY 2 -9 ? ? ? C . n C 2 3 LYS 3 -8 ? ? ? C . n C 2 4 LYS 4 -7 ? ? ? C . n C 2 5 PRO 5 -6 ? ? ? C . n C 2 6 ILE 6 -5 ? ? ? C . n C 2 7 TYR 7 -4 ? ? ? C . n C 2 8 LYS 8 -3 ? ? ? C . n C 2 9 LYS 9 -2 ? ? ? C . n C 2 10 ALA 10 -1 ? ? ? C . n C 2 11 PRO 11 0 ? ? ? C . n C 2 12 THR 12 1 1 THR THR C . n C 2 13 ASN 13 2 2 ASN ASN C . n C 2 14 GLU 14 3 3 GLU GLU C . n C 2 15 PHE 15 4 4 PHE PHE C . n C 2 16 TYR 16 5 5 TYR TYR C . n C 2 17 ALA 17 6 6 ALA ALA C . n D 2 1 LEU 1 -10 ? ? ? D . n D 2 2 GLY 2 -9 ? ? ? D . n D 2 3 LYS 3 -8 ? ? ? D . n D 2 4 LYS 4 -7 ? ? ? D . n D 2 5 PRO 5 -6 ? ? ? D . n D 2 6 ILE 6 -5 ? ? ? D . n D 2 7 TYR 7 -4 ? ? ? D . n D 2 8 LYS 8 -3 ? ? ? D . n D 2 9 LYS 9 -2 ? ? ? D . n D 2 10 ALA 10 -1 ? ? ? D . n D 2 11 PRO 11 0 ? ? ? D . n D 2 12 THR 12 1 ? ? ? D . n D 2 13 ASN 13 2 ? ? ? D . n D 2 14 GLU 14 3 3 GLU GLU D . n D 2 15 PHE 15 4 4 PHE PHE D . n D 2 16 TYR 16 5 5 TYR TYR D . n D 2 17 ALA 17 6 6 ALA ALA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 274 9 HOH HOH A . E 3 HOH 2 275 10 HOH HOH A . E 3 HOH 3 276 14 HOH HOH A . E 3 HOH 4 277 17 HOH HOH A . E 3 HOH 5 278 18 HOH HOH A . E 3 HOH 6 279 19 HOH HOH A . E 3 HOH 7 280 21 HOH HOH A . E 3 HOH 8 281 22 HOH HOH A . E 3 HOH 9 282 23 HOH HOH A . E 3 HOH 10 283 25 HOH HOH A . E 3 HOH 11 284 26 HOH HOH A . E 3 HOH 12 285 27 HOH HOH A . E 3 HOH 13 286 29 HOH HOH A . E 3 HOH 14 287 30 HOH HOH A . E 3 HOH 15 288 32 HOH HOH A . E 3 HOH 16 289 33 HOH HOH A . E 3 HOH 17 290 38 HOH HOH A . E 3 HOH 18 291 39 HOH HOH A . E 3 HOH 19 292 40 HOH HOH A . E 3 HOH 20 293 42 HOH HOH A . E 3 HOH 21 294 44 HOH HOH A . E 3 HOH 22 295 47 HOH HOH A . E 3 HOH 23 296 48 HOH HOH A . E 3 HOH 24 297 49 HOH HOH A . E 3 HOH 25 298 50 HOH HOH A . E 3 HOH 26 299 54 HOH HOH A . E 3 HOH 27 300 60 HOH HOH A . E 3 HOH 28 301 61 HOH HOH A . E 3 HOH 29 302 66 HOH HOH A . E 3 HOH 30 303 67 HOH HOH A . E 3 HOH 31 304 68 HOH HOH A . E 3 HOH 32 305 70 HOH HOH A . E 3 HOH 33 306 71 HOH HOH A . E 3 HOH 34 307 73 HOH HOH A . E 3 HOH 35 308 75 HOH HOH A . E 3 HOH 36 309 78 HOH HOH A . E 3 HOH 37 310 80 HOH HOH A . E 3 HOH 38 311 83 HOH HOH A . E 3 HOH 39 312 84 HOH HOH A . E 3 HOH 40 313 88 HOH HOH A . E 3 HOH 41 314 90 HOH HOH A . E 3 HOH 42 315 92 HOH HOH A . E 3 HOH 43 316 95 HOH HOH A . E 3 HOH 44 317 96 HOH HOH A . E 3 HOH 45 318 97 HOH HOH A . E 3 HOH 46 319 99 HOH HOH A . E 3 HOH 47 320 100 HOH HOH A . E 3 HOH 48 321 101 HOH HOH A . E 3 HOH 49 322 102 HOH HOH A . E 3 HOH 50 323 103 HOH HOH A . E 3 HOH 51 324 106 HOH HOH A . E 3 HOH 52 325 107 HOH HOH A . E 3 HOH 53 326 109 HOH HOH A . E 3 HOH 54 327 110 HOH HOH A . E 3 HOH 55 328 112 HOH HOH A . E 3 HOH 56 329 116 HOH HOH A . E 3 HOH 57 330 126 HOH HOH A . E 3 HOH 58 331 127 HOH HOH A . E 3 HOH 59 332 128 HOH HOH A . E 3 HOH 60 333 129 HOH HOH A . E 3 HOH 61 334 130 HOH HOH A . E 3 HOH 62 335 132 HOH HOH A . E 3 HOH 63 336 133 HOH HOH A . E 3 HOH 64 337 135 HOH HOH A . E 3 HOH 65 338 136 HOH HOH A . E 3 HOH 66 339 140 HOH HOH A . E 3 HOH 67 340 141 HOH HOH A . E 3 HOH 68 341 142 HOH HOH A . E 3 HOH 69 342 145 HOH HOH A . E 3 HOH 70 343 146 HOH HOH A . E 3 HOH 71 344 147 HOH HOH A . E 3 HOH 72 345 148 HOH HOH A . E 3 HOH 73 346 152 HOH HOH A . E 3 HOH 74 347 156 HOH HOH A . E 3 HOH 75 348 158 HOH HOH A . E 3 HOH 76 349 159 HOH HOH A . E 3 HOH 77 350 160 HOH HOH A . E 3 HOH 78 351 161 HOH HOH A . E 3 HOH 79 352 162 HOH HOH A . E 3 HOH 80 353 163 HOH HOH A . E 3 HOH 81 354 164 HOH HOH A . E 3 HOH 82 355 165 HOH HOH A . E 3 HOH 83 356 168 HOH HOH A . E 3 HOH 84 357 169 HOH HOH A . E 3 HOH 85 358 171 HOH HOH A . E 3 HOH 86 359 173 HOH HOH A . E 3 HOH 87 360 175 HOH HOH A . E 3 HOH 88 361 178 HOH HOH A . E 3 HOH 89 362 179 HOH HOH A . E 3 HOH 90 363 184 HOH HOH A . E 3 HOH 91 364 187 HOH HOH A . E 3 HOH 92 365 188 HOH HOH A . F 3 HOH 1 274 1 HOH HOH B . F 3 HOH 2 275 2 HOH HOH B . F 3 HOH 3 276 3 HOH HOH B . F 3 HOH 4 277 4 HOH HOH B . F 3 HOH 5 278 5 HOH HOH B . F 3 HOH 6 279 6 HOH HOH B . F 3 HOH 7 280 7 HOH HOH B . F 3 HOH 8 281 8 HOH HOH B . F 3 HOH 9 282 11 HOH HOH B . F 3 HOH 10 283 12 HOH HOH B . F 3 HOH 11 284 13 HOH HOH B . F 3 HOH 12 285 15 HOH HOH B . F 3 HOH 13 286 16 HOH HOH B . F 3 HOH 14 287 20 HOH HOH B . F 3 HOH 15 288 24 HOH HOH B . F 3 HOH 16 289 28 HOH HOH B . F 3 HOH 17 290 31 HOH HOH B . F 3 HOH 18 291 34 HOH HOH B . F 3 HOH 19 292 35 HOH HOH B . F 3 HOH 20 293 36 HOH HOH B . F 3 HOH 21 294 37 HOH HOH B . F 3 HOH 22 295 41 HOH HOH B . F 3 HOH 23 296 45 HOH HOH B . F 3 HOH 24 297 46 HOH HOH B . F 3 HOH 25 298 53 HOH HOH B . F 3 HOH 26 299 55 HOH HOH B . F 3 HOH 27 300 56 HOH HOH B . F 3 HOH 28 301 57 HOH HOH B . F 3 HOH 29 302 58 HOH HOH B . F 3 HOH 30 303 59 HOH HOH B . F 3 HOH 31 304 62 HOH HOH B . F 3 HOH 32 305 63 HOH HOH B . F 3 HOH 33 306 64 HOH HOH B . F 3 HOH 34 307 69 HOH HOH B . F 3 HOH 35 308 72 HOH HOH B . F 3 HOH 36 309 74 HOH HOH B . F 3 HOH 37 310 76 HOH HOH B . F 3 HOH 38 311 77 HOH HOH B . F 3 HOH 39 312 81 HOH HOH B . F 3 HOH 40 313 82 HOH HOH B . F 3 HOH 41 314 85 HOH HOH B . F 3 HOH 42 315 86 HOH HOH B . F 3 HOH 43 316 87 HOH HOH B . F 3 HOH 44 317 89 HOH HOH B . F 3 HOH 45 318 93 HOH HOH B . F 3 HOH 46 319 94 HOH HOH B . F 3 HOH 47 320 98 HOH HOH B . F 3 HOH 48 321 104 HOH HOH B . F 3 HOH 49 322 105 HOH HOH B . F 3 HOH 50 323 108 HOH HOH B . F 3 HOH 51 324 111 HOH HOH B . F 3 HOH 52 325 113 HOH HOH B . F 3 HOH 53 326 114 HOH HOH B . F 3 HOH 54 327 115 HOH HOH B . F 3 HOH 55 328 117 HOH HOH B . F 3 HOH 56 329 118 HOH HOH B . F 3 HOH 57 330 120 HOH HOH B . F 3 HOH 58 331 121 HOH HOH B . F 3 HOH 59 332 123 HOH HOH B . F 3 HOH 60 333 124 HOH HOH B . F 3 HOH 61 334 125 HOH HOH B . F 3 HOH 62 335 131 HOH HOH B . F 3 HOH 63 336 134 HOH HOH B . F 3 HOH 64 337 137 HOH HOH B . F 3 HOH 65 338 138 HOH HOH B . F 3 HOH 66 339 143 HOH HOH B . F 3 HOH 67 340 144 HOH HOH B . F 3 HOH 68 341 149 HOH HOH B . F 3 HOH 69 342 150 HOH HOH B . F 3 HOH 70 343 151 HOH HOH B . F 3 HOH 71 344 153 HOH HOH B . F 3 HOH 72 345 154 HOH HOH B . F 3 HOH 73 346 155 HOH HOH B . F 3 HOH 74 347 157 HOH HOH B . F 3 HOH 75 348 166 HOH HOH B . F 3 HOH 76 349 167 HOH HOH B . F 3 HOH 77 350 170 HOH HOH B . F 3 HOH 78 351 172 HOH HOH B . F 3 HOH 79 352 174 HOH HOH B . F 3 HOH 80 353 176 HOH HOH B . F 3 HOH 81 354 177 HOH HOH B . F 3 HOH 82 355 180 HOH HOH B . F 3 HOH 83 356 181 HOH HOH B . F 3 HOH 84 357 182 HOH HOH B . F 3 HOH 85 358 183 HOH HOH B . F 3 HOH 86 359 185 HOH HOH B . F 3 HOH 87 360 189 HOH HOH B . F 3 HOH 88 361 191 HOH HOH B . F 3 HOH 89 362 192 HOH HOH B . F 3 HOH 90 363 193 HOH HOH B . G 3 HOH 1 43 43 HOH HOH C . G 3 HOH 2 91 91 HOH HOH C . G 3 HOH 3 122 122 HOH HOH C . G 3 HOH 4 186 186 HOH HOH C . H 3 HOH 1 79 79 HOH HOH D . H 3 HOH 2 119 119 HOH HOH D . H 3 HOH 3 139 139 HOH HOH D . H 3 HOH 4 190 190 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3710 ? 1 MORE -21 ? 1 'SSA (A^2)' 16990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 55.7780 47.1690 35.1050 -0.0785 -0.0349 -0.0790 -0.0016 -0.0194 -0.0085 4.7775 2.1453 2.4920 -0.5191 0.5585 -0.6667 0.0657 -0.0476 -0.0181 0.3130 -0.2309 -0.1684 0.1143 0.0615 0.3268 'X-RAY DIFFRACTION' 2 ? refined 44.3510 25.9530 46.4010 -0.0103 -0.0971 -0.0912 0.0268 0.0067 0.0143 2.8328 2.7674 2.0703 -0.9323 -0.2846 -0.7531 0.0822 -0.0859 0.0037 0.0943 -0.0397 -0.0871 -0.0777 0.0560 -0.0136 'X-RAY DIFFRACTION' 3 ? refined 21.9500 36.0780 50.6150 -0.0137 -0.1066 -0.0418 0.0199 0.0124 -0.0067 2.1351 2.4329 1.5015 -0.7243 -1.0101 0.3339 0.0697 -0.0640 -0.0058 0.0057 -0.0027 0.2181 0.0243 -0.0695 0.0395 'X-RAY DIFFRACTION' 4 ? refined 33.2780 57.5030 38.4460 -0.0393 -0.0755 -0.0488 0.0139 0.0297 0.0577 3.9619 2.1873 1.8889 -0.2591 -1.1889 -0.5383 0.0162 0.1178 -0.1340 0.3137 0.2628 0.0973 0.0159 -0.0740 -0.2518 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 4 A 88 ALL A 111 A 195 'X-RAY DIFFRACTION' ? 2 2 C 12 C 17 ALL C 1 C 6 'X-RAY DIFFRACTION' ? 3 3 B 2 B 88 ALL B 109 B 195 'X-RAY DIFFRACTION' ? 4 4 D 14 D 17 ALL D 3 D 6 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.401 'March 3, 2004' program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C/C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 342 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 352 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 282 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 350 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 172 ? ? CG A ASP 172 ? ? OD1 A ASP 172 ? ? 124.03 118.30 5.73 0.90 N 2 1 NE A ARG 193 ? ? CZ A ARG 193 ? ? NH1 A ARG 193 ? ? 124.52 120.30 4.22 0.50 N 3 1 NE A ARG 193 ? ? CZ A ARG 193 ? ? NH2 A ARG 193 ? ? 115.08 120.30 -5.22 0.50 N 4 1 NE A ARG 229 ? ? CZ A ARG 229 ? ? NH1 A ARG 229 ? ? 123.63 120.30 3.33 0.50 N 5 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD1 A ASP 256 ? ? 110.07 118.30 -8.23 0.90 N 6 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD2 A ASP 256 ? ? 124.95 118.30 6.65 0.90 N 7 1 C A SER 261 ? ? N A GLY 262 ? ? CA A GLY 262 ? ? 108.70 122.30 -13.60 2.10 Y 8 1 CB B ASP 122 ? ? CG B ASP 122 ? ? OD1 B ASP 122 ? ? 124.11 118.30 5.81 0.90 N 9 1 NE B ARG 128 ? ? CZ B ARG 128 ? ? NH1 B ARG 128 ? ? 123.97 120.30 3.67 0.50 N 10 1 CB B ASP 133 ? ? CG B ASP 133 ? ? OD1 B ASP 133 ? ? 124.29 118.30 5.99 0.90 N 11 1 CB B ASP 156 ? ? CG B ASP 156 ? ? OD1 B ASP 156 ? ? 123.91 118.30 5.61 0.90 N 12 1 CB B ASP 156 ? ? CG B ASP 156 ? ? OD2 B ASP 156 ? ? 111.79 118.30 -6.51 0.90 N 13 1 NE B ARG 197 ? ? CZ B ARG 197 ? ? NH1 B ARG 197 ? ? 124.31 120.30 4.01 0.50 N 14 1 NE B ARG 197 ? ? CZ B ARG 197 ? ? NH2 B ARG 197 ? ? 116.50 120.30 -3.80 0.50 N 15 1 CB B ASP 204 ? ? CG B ASP 204 ? ? OD1 B ASP 204 ? ? 125.20 118.30 6.90 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 122 ? ? 114.30 -42.04 2 1 LYS A 124 ? ? -8.62 133.06 3 1 ASN A 134 ? ? 56.54 18.83 4 1 ARG A 193 ? ? 2.10 77.11 5 1 ARG B 193 ? ? 2.15 78.42 6 1 ASN C 2 ? ? -103.03 45.92 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 108 ? A GLY 1 2 1 Y 1 A ALA 109 ? A ALA 2 3 1 Y 1 A MET 110 ? A MET 3 4 1 Y 1 B GLY 108 ? B GLY 1 5 1 Y 1 B PHE 273 ? B PHE 166 6 1 Y 1 C LEU -10 ? C LEU 1 7 1 Y 1 C GLY -9 ? C GLY 2 8 1 Y 1 C LYS -8 ? C LYS 3 9 1 Y 1 C LYS -7 ? C LYS 4 10 1 Y 1 C PRO -6 ? C PRO 5 11 1 Y 1 C ILE -5 ? C ILE 6 12 1 Y 1 C TYR -4 ? C TYR 7 13 1 Y 1 C LYS -3 ? C LYS 8 14 1 Y 1 C LYS -2 ? C LYS 9 15 1 Y 1 C ALA -1 ? C ALA 10 16 1 Y 1 C PRO 0 ? C PRO 11 17 1 Y 1 D LEU -10 ? D LEU 1 18 1 Y 1 D GLY -9 ? D GLY 2 19 1 Y 1 D LYS -8 ? D LYS 3 20 1 Y 1 D LYS -7 ? D LYS 4 21 1 Y 1 D PRO -6 ? D PRO 5 22 1 Y 1 D ILE -5 ? D ILE 6 23 1 Y 1 D TYR -4 ? D TYR 7 24 1 Y 1 D LYS -3 ? D LYS 8 25 1 Y 1 D LYS -2 ? D LYS 9 26 1 Y 1 D ALA -1 ? D ALA 10 27 1 Y 1 D PRO 0 ? D PRO 11 28 1 Y 1 D THR 1 ? D THR 12 29 1 Y 1 D ASN 2 ? D ASN 13 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #