HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-04 1YCD TITLE CRYSTAL STRUCTURE OF YEAST FSH1/YHR049W, A MEMBER OF THE SERINE TITLE 2 HYDROLASE FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 27.3 KDA PROTEIN IN AAP1-SMF2 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: S. CEREVISIAE YHR049WP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YHR049W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ESTERASE, LIPASE, SERINE HYDROLASE, S. CEREVISIAE, STRUCTURAL KEYWDS 2 GENOMICS, PARIS-SUD YEAST STRUCTURAL GENOMICS, YSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.LEULLIOT,M.GRAILLE,F.COSTE,S.QUEVILLON-CHERUEL,J.JANIN,H.VAN AUTHOR 2 TILBEURGH,PARIS-SUD YEAST STRUCTURAL GENOMICS (YSG) REVDAT 3 20-OCT-21 1YCD 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1YCD 1 VERSN REVDAT 1 10-MAY-05 1YCD 0 JRNL AUTH S.QUEVILLON-CHERUEL,N.LEULLIOT,M.GRAILLE,N.HERVOUET,F.COSTE, JRNL AUTH 2 C.ZELWER,J.JANIN,H.VAN TILBEURGH JRNL TITL CRYSTAL STRUCTURE OF YEAST YHR049W/FSH1, A MEMBER OF THE JRNL TITL 2 SERINE HYDROLASE FAMILY. JRNL REF PROTEIN SCI. V. 14 1350 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15802654 JRNL DOI 10.1110/PS.051415905 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 54126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 936 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : -0.39000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.958 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3880 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5242 ; 1.283 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;32.863 ;25.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;12.056 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2887 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2007 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2669 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 694 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 65 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3840 ; 1.260 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 2.060 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 3.358 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16500 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4K, 0.1M MES, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 240 REMARK 465 ALA A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 SER B 242 REMARK 465 GLU B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 109 C SER A 110 N 0.149 REMARK 500 SER A 110 C GLN A 111 N 0.310 REMARK 500 LEU B 109 C SER B 110 N 0.210 REMARK 500 SER B 110 C GLN B 111 N 0.282 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 110 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 110 -106.68 50.75 REMARK 500 ASP A 129 -10.46 80.19 REMARK 500 SER B 110 -111.96 51.75 REMARK 500 ASP B 129 -3.94 74.97 REMARK 500 GLN B 202 30.40 -97.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE AUTHOR STATES THAT THE LI5 RESIDUE REMARK 600 IN MOLECULE B DOES NOT CONTAIN C32 ATOM REMARK 600 BECAUSE THIS ATOM WAS NOT DETECTED IN THE REMARK 600 ELECTRON DENSITY FOR MOLECULE B BUT WAS REMARK 600 DETECTED IN MOLECULE A. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LI5 B 800 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI5 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI5 B 800 DBREF 1YCD A 1 243 UNP P38777 YHK9_YEAST 1 243 DBREF 1YCD B 1 243 UNP P38777 YHK9_YEAST 1 243 SEQADV 1YCD LEU A 109 UNP P38777 PHE 109 ENGINEERED MUTATION SEQADV 1YCD LEU B 109 UNP P38777 PHE 109 ENGINEERED MUTATION SEQRES 1 A 243 MET THR VAL GLN ILE PRO LYS LEU LEU PHE LEU HIS GLY SEQRES 2 A 243 PHE LEU GLN ASN GLY LYS VAL PHE SER GLU LYS SER SER SEQRES 3 A 243 GLY ILE ARG LYS LEU LEU LYS LYS ALA ASN VAL GLN CYS SEQRES 4 A 243 ASP TYR ILE ASP ALA PRO VAL LEU LEU GLU LYS LYS ASP SEQRES 5 A 243 LEU PRO PHE GLU MET ASP ASP GLU LYS TRP GLN ALA THR SEQRES 6 A 243 LEU ASP ALA ASP VAL ASN ARG ALA TRP PHE TYR HIS SER SEQRES 7 A 243 GLU ILE SER HIS GLU LEU ASP ILE SER GLU GLY LEU LYS SEQRES 8 A 243 SER VAL VAL ASP HIS ILE LYS ALA ASN GLY PRO TYR ASP SEQRES 9 A 243 GLY ILE VAL GLY LEU SER GLN GLY ALA ALA LEU SER SER SEQRES 10 A 243 ILE ILE THR ASN LYS ILE SER GLU LEU VAL PRO ASP HIS SEQRES 11 A 243 PRO GLN PHE LYS VAL SER VAL VAL ILE SER GLY TYR SER SEQRES 12 A 243 PHE THR GLU PRO ASP PRO GLU HIS PRO GLY GLU LEU ARG SEQRES 13 A 243 ILE THR GLU LYS PHE ARG ASP SER PHE ALA VAL LYS PRO SEQRES 14 A 243 ASP MET LYS THR LYS MET ILE PHE ILE TYR GLY ALA SER SEQRES 15 A 243 ASP GLN ALA VAL PRO SER VAL ARG SER LYS TYR LEU TYR SEQRES 16 A 243 ASP ILE TYR LEU LYS ALA GLN ASN GLY ASN LYS GLU LYS SEQRES 17 A 243 VAL LEU ALA TYR GLU HIS PRO GLY GLY HIS MET VAL PRO SEQRES 18 A 243 ASN LYS LYS ASP ILE ILE ARG PRO ILE VAL GLU GLN ILE SEQRES 19 A 243 THR SER SER LEU GLN GLU ALA SER GLU SEQRES 1 B 243 MET THR VAL GLN ILE PRO LYS LEU LEU PHE LEU HIS GLY SEQRES 2 B 243 PHE LEU GLN ASN GLY LYS VAL PHE SER GLU LYS SER SER SEQRES 3 B 243 GLY ILE ARG LYS LEU LEU LYS LYS ALA ASN VAL GLN CYS SEQRES 4 B 243 ASP TYR ILE ASP ALA PRO VAL LEU LEU GLU LYS LYS ASP SEQRES 5 B 243 LEU PRO PHE GLU MET ASP ASP GLU LYS TRP GLN ALA THR SEQRES 6 B 243 LEU ASP ALA ASP VAL ASN ARG ALA TRP PHE TYR HIS SER SEQRES 7 B 243 GLU ILE SER HIS GLU LEU ASP ILE SER GLU GLY LEU LYS SEQRES 8 B 243 SER VAL VAL ASP HIS ILE LYS ALA ASN GLY PRO TYR ASP SEQRES 9 B 243 GLY ILE VAL GLY LEU SER GLN GLY ALA ALA LEU SER SER SEQRES 10 B 243 ILE ILE THR ASN LYS ILE SER GLU LEU VAL PRO ASP HIS SEQRES 11 B 243 PRO GLN PHE LYS VAL SER VAL VAL ILE SER GLY TYR SER SEQRES 12 B 243 PHE THR GLU PRO ASP PRO GLU HIS PRO GLY GLU LEU ARG SEQRES 13 B 243 ILE THR GLU LYS PHE ARG ASP SER PHE ALA VAL LYS PRO SEQRES 14 B 243 ASP MET LYS THR LYS MET ILE PHE ILE TYR GLY ALA SER SEQRES 15 B 243 ASP GLN ALA VAL PRO SER VAL ARG SER LYS TYR LEU TYR SEQRES 16 B 243 ASP ILE TYR LEU LYS ALA GLN ASN GLY ASN LYS GLU LYS SEQRES 17 B 243 VAL LEU ALA TYR GLU HIS PRO GLY GLY HIS MET VAL PRO SEQRES 18 B 243 ASN LYS LYS ASP ILE ILE ARG PRO ILE VAL GLU GLN ILE SEQRES 19 B 243 THR SER SER LEU GLN GLU ALA SER GLU HET LI5 A 800 14 HET LI5 B 800 13 HETNAM LI5 2-HYDROXY-4,5-DIOXOHEPTYL HYDROGEN PHOSPHONATE FORMUL 3 LI5 2(C7 H13 O6 P) FORMUL 5 HOH *936(H2 O) HELIX 1 1 ASN A 17 SER A 25 1 9 HELIX 2 2 SER A 25 ALA A 35 1 11 HELIX 3 3 GLU A 49 LEU A 53 5 5 HELIX 4 4 ASP A 58 ALA A 68 1 11 HELIX 5 5 ILE A 80 LEU A 84 5 5 HELIX 6 6 ILE A 86 GLY A 101 1 16 HELIX 7 7 SER A 110 VAL A 127 1 18 HELIX 8 8 GLU A 159 ARG A 162 5 4 HELIX 9 9 PRO A 187 GLN A 202 1 16 HELIX 10 10 LYS A 223 GLN A 239 1 17 HELIX 11 11 ASN B 17 SER B 25 1 9 HELIX 12 12 SER B 25 ALA B 35 1 11 HELIX 13 13 GLU B 49 LEU B 53 5 5 HELIX 14 14 ASP B 58 ALA B 68 1 11 HELIX 15 15 ILE B 80 LEU B 84 5 5 HELIX 16 16 ILE B 86 GLY B 101 1 16 HELIX 17 17 SER B 110 VAL B 127 1 18 HELIX 18 18 GLU B 159 ARG B 162 5 4 HELIX 19 19 PRO B 187 GLN B 202 1 16 HELIX 20 20 LYS B 223 GLN B 239 1 17 SHEET 1 A 6 GLN A 38 ILE A 42 0 SHEET 2 A 6 LYS A 7 LEU A 11 1 N LEU A 8 O GLN A 38 SHEET 3 A 6 GLY A 105 LEU A 109 1 O VAL A 107 N LEU A 11 SHEET 4 A 6 VAL A 135 ILE A 139 1 O VAL A 137 N ILE A 106 SHEET 5 A 6 LYS A 174 GLY A 180 1 O ILE A 176 N SER A 136 SHEET 6 A 6 VAL A 209 HIS A 214 1 O LEU A 210 N PHE A 177 SHEET 1 B 2 VAL A 46 LEU A 47 0 SHEET 2 B 2 ARG A 72 ALA A 73 -1 O ALA A 73 N VAL A 46 SHEET 1 C 2 THR A 145 PRO A 147 0 SHEET 2 C 2 LEU A 155 ILE A 157 -1 O ARG A 156 N GLU A 146 SHEET 1 D 6 GLN B 38 ILE B 42 0 SHEET 2 D 6 LYS B 7 LEU B 11 1 N PHE B 10 O ASP B 40 SHEET 3 D 6 GLY B 105 LEU B 109 1 O VAL B 107 N LEU B 11 SHEET 4 D 6 VAL B 135 ILE B 139 1 O VAL B 137 N ILE B 106 SHEET 5 D 6 LYS B 174 GLY B 180 1 O ILE B 176 N VAL B 138 SHEET 6 D 6 VAL B 209 HIS B 214 1 O LEU B 210 N MET B 175 SHEET 1 E 2 VAL B 46 LEU B 47 0 SHEET 2 E 2 ARG B 72 ALA B 73 -1 O ALA B 73 N VAL B 46 SHEET 1 F 2 THR B 145 PRO B 147 0 SHEET 2 F 2 LEU B 155 ILE B 157 -1 O ARG B 156 N GLU B 146 LINK OG SER A 110 P LI5 A 800 1555 1555 1.62 LINK OG SER B 110 P LI5 B 800 1555 1555 1.63 CISPEP 1 VAL A 3 GLN A 4 0 -0.39 CISPEP 2 GLY A 101 PRO A 102 0 3.85 CISPEP 3 GLY B 101 PRO B 102 0 0.19 SITE 1 AC1 10 GLY A 13 PHE A 14 PHE A 55 HIS A 77 SITE 2 AC1 10 SER A 110 GLN A 111 ALA A 185 HIS A 218 SITE 3 AC1 10 HOH A1030 HOH A1084 SITE 1 AC2 9 GLY B 13 PHE B 14 PHE B 55 SER B 110 SITE 2 AC2 9 GLN B 111 HIS B 218 HOH B1041 HOH B1043 SITE 3 AC2 9 HOH B1259 CRYST1 46.133 53.329 64.271 102.85 90.04 112.47 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021676 0.008966 0.002239 0.00000 SCALE2 0.000000 0.020292 0.005036 0.00000 SCALE3 0.000000 0.000000 0.016031 0.00000