data_1YDF # _entry.id 1YDF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YDF pdb_00001ydf 10.2210/pdb1ydf/pdb RCSB RCSB031401 ? ? WWPDB D_1000031401 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-18 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-02-03 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_ref_seq_dif.details' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 32 5 'Structure model' '_database_2.pdbx_DOI' 33 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YDF _pdbx_database_status.recvd_initial_deposition_date 2004-12-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB T1724 . unspecified TargetDB NYSGXRC-T1724 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Seetharaman, J.' 1 ? 'Swaminathan, S.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal Structure of a Hypothetical protein, hydrolase haloacid dehalogenase-like family' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seetharaman, J.' 1 ? primary 'Swaminathan, S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hydrolase, haloacid dehalogenase-like family' 28190.059 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLYKGYLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTVYTATLATIDYM NDLGLEKTVYVVGEAGLKEAIKAAGYVEDKEKPAYVVVGLDWQVDYEKFATATLAIQKGAHFIGTNPDLNIPTERGLLPG AGSLITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEVAGLPI APTHVVSSLAEWDFDEN ; _entity_poly.pdbx_seq_one_letter_code_can ;SLYKGYLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTVYTATLATIDYM NDLGLEKTVYVVGEAGLKEAIKAAGYVEDKEKPAYVVVGLDWQVDYEKFATATLAIQKGAHFIGTNPDLNIPTERGLLPG AGSLITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEVAGLPI APTHVVSSLAEWDFDEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-T1724 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 TYR n 1 4 LYS n 1 5 GLY n 1 6 TYR n 1 7 LEU n 1 8 ILE n 1 9 ASP n 1 10 LEU n 1 11 ASP n 1 12 GLY n 1 13 THR n 1 14 ILE n 1 15 TYR n 1 16 LYS n 1 17 GLY n 1 18 LYS n 1 19 ASP n 1 20 ARG n 1 21 ILE n 1 22 PRO n 1 23 ALA n 1 24 GLY n 1 25 GLU n 1 26 THR n 1 27 PHE n 1 28 VAL n 1 29 HIS n 1 30 GLU n 1 31 LEU n 1 32 GLN n 1 33 LYS n 1 34 ARG n 1 35 ASP n 1 36 ILE n 1 37 PRO n 1 38 TYR n 1 39 LEU n 1 40 PHE n 1 41 VAL n 1 42 THR n 1 43 ASN n 1 44 ASN n 1 45 THR n 1 46 THR n 1 47 ARG n 1 48 THR n 1 49 PRO n 1 50 GLU n 1 51 SER n 1 52 VAL n 1 53 LYS n 1 54 GLU n 1 55 MET n 1 56 LEU n 1 57 ALA n 1 58 GLN n 1 59 ASN n 1 60 PHE n 1 61 ASN n 1 62 ILE n 1 63 ASP n 1 64 THR n 1 65 PRO n 1 66 LEU n 1 67 SER n 1 68 THR n 1 69 VAL n 1 70 TYR n 1 71 THR n 1 72 ALA n 1 73 THR n 1 74 LEU n 1 75 ALA n 1 76 THR n 1 77 ILE n 1 78 ASP n 1 79 TYR n 1 80 MET n 1 81 ASN n 1 82 ASP n 1 83 LEU n 1 84 GLY n 1 85 LEU n 1 86 GLU n 1 87 LYS n 1 88 THR n 1 89 VAL n 1 90 TYR n 1 91 VAL n 1 92 VAL n 1 93 GLY n 1 94 GLU n 1 95 ALA n 1 96 GLY n 1 97 LEU n 1 98 LYS n 1 99 GLU n 1 100 ALA n 1 101 ILE n 1 102 LYS n 1 103 ALA n 1 104 ALA n 1 105 GLY n 1 106 TYR n 1 107 VAL n 1 108 GLU n 1 109 ASP n 1 110 LYS n 1 111 GLU n 1 112 LYS n 1 113 PRO n 1 114 ALA n 1 115 TYR n 1 116 VAL n 1 117 VAL n 1 118 VAL n 1 119 GLY n 1 120 LEU n 1 121 ASP n 1 122 TRP n 1 123 GLN n 1 124 VAL n 1 125 ASP n 1 126 TYR n 1 127 GLU n 1 128 LYS n 1 129 PHE n 1 130 ALA n 1 131 THR n 1 132 ALA n 1 133 THR n 1 134 LEU n 1 135 ALA n 1 136 ILE n 1 137 GLN n 1 138 LYS n 1 139 GLY n 1 140 ALA n 1 141 HIS n 1 142 PHE n 1 143 ILE n 1 144 GLY n 1 145 THR n 1 146 ASN n 1 147 PRO n 1 148 ASP n 1 149 LEU n 1 150 ASN n 1 151 ILE n 1 152 PRO n 1 153 THR n 1 154 GLU n 1 155 ARG n 1 156 GLY n 1 157 LEU n 1 158 LEU n 1 159 PRO n 1 160 GLY n 1 161 ALA n 1 162 GLY n 1 163 SER n 1 164 LEU n 1 165 ILE n 1 166 THR n 1 167 LEU n 1 168 LEU n 1 169 GLU n 1 170 VAL n 1 171 ALA n 1 172 THR n 1 173 ARG n 1 174 VAL n 1 175 LYS n 1 176 PRO n 1 177 VAL n 1 178 TYR n 1 179 ILE n 1 180 GLY n 1 181 LYS n 1 182 PRO n 1 183 ASN n 1 184 ALA n 1 185 ILE n 1 186 ILE n 1 187 MET n 1 188 ASP n 1 189 LYS n 1 190 ALA n 1 191 VAL n 1 192 GLU n 1 193 HIS n 1 194 LEU n 1 195 GLY n 1 196 LEU n 1 197 GLU n 1 198 ARG n 1 199 GLU n 1 200 GLU n 1 201 LEU n 1 202 ILE n 1 203 MET n 1 204 VAL n 1 205 GLY n 1 206 ASP n 1 207 ASN n 1 208 TYR n 1 209 LEU n 1 210 THR n 1 211 ASP n 1 212 ILE n 1 213 ARG n 1 214 ALA n 1 215 GLY n 1 216 ILE n 1 217 ASP n 1 218 ASN n 1 219 GLY n 1 220 ILE n 1 221 PRO n 1 222 THR n 1 223 LEU n 1 224 LEU n 1 225 VAL n 1 226 THR n 1 227 THR n 1 228 GLY n 1 229 PHE n 1 230 THR n 1 231 LYS n 1 232 ALA n 1 233 GLU n 1 234 GLU n 1 235 VAL n 1 236 ALA n 1 237 GLY n 1 238 LEU n 1 239 PRO n 1 240 ILE n 1 241 ALA n 1 242 PRO n 1 243 THR n 1 244 HIS n 1 245 VAL n 1 246 VAL n 1 247 SER n 1 248 SER n 1 249 LEU n 1 250 ALA n 1 251 GLU n 1 252 TRP n 1 253 ASP n 1 254 PHE n 1 255 ASP n 1 256 GLU n 1 257 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Streptococcus pneumoniae' _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 LEU 2 3 3 LEU LEU A . n A 1 3 TYR 3 4 4 TYR TYR A . n A 1 4 LYS 4 5 5 LYS LYS A . n A 1 5 GLY 5 6 6 GLY GLY A . n A 1 6 TYR 6 7 7 TYR TYR A . n A 1 7 LEU 7 8 8 LEU LEU A . n A 1 8 ILE 8 9 9 ILE ILE A . n A 1 9 ASP 9 10 10 ASP ASP A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 ASP 11 12 12 ASP ASP A . n A 1 12 GLY 12 13 13 GLY GLY A . n A 1 13 THR 13 14 14 THR THR A . n A 1 14 ILE 14 15 15 ILE ILE A . n A 1 15 TYR 15 16 16 TYR TYR A . n A 1 16 LYS 16 17 17 LYS LYS A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 LYS 18 19 19 LYS LYS A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 ARG 20 21 21 ARG ARG A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 ALA 23 24 24 ALA ALA A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 GLU 25 26 26 GLU GLU A . n A 1 26 THR 26 27 27 THR THR A . n A 1 27 PHE 27 28 28 PHE PHE A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 HIS 29 30 30 HIS HIS A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 GLN 32 33 33 GLN GLN A . n A 1 33 LYS 33 34 34 LYS LYS A . n A 1 34 ARG 34 35 35 ARG ARG A . n A 1 35 ASP 35 36 36 ASP ASP A . n A 1 36 ILE 36 37 37 ILE ILE A . n A 1 37 PRO 37 38 38 PRO PRO A . n A 1 38 TYR 38 39 39 TYR TYR A . n A 1 39 LEU 39 40 40 LEU LEU A . n A 1 40 PHE 40 41 41 PHE PHE A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 THR 42 43 43 THR THR A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 ASN 44 45 45 ASN ASN A . n A 1 45 THR 45 46 46 THR THR A . n A 1 46 THR 46 47 47 THR THR A . n A 1 47 ARG 47 48 48 ARG ARG A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 PRO 49 50 50 PRO PRO A . n A 1 50 GLU 50 51 51 GLU GLU A . n A 1 51 SER 51 52 52 SER SER A . n A 1 52 VAL 52 53 53 VAL VAL A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 MET 55 56 56 MET MET A . n A 1 56 LEU 56 57 57 LEU LEU A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 GLN 58 59 59 GLN GLN A . n A 1 59 ASN 59 60 60 ASN ASN A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 ASN 61 62 62 ASN ASN A . n A 1 62 ILE 62 63 63 ILE ILE A . n A 1 63 ASP 63 64 64 ASP ASP A . n A 1 64 THR 64 65 65 THR THR A . n A 1 65 PRO 65 66 66 PRO PRO A . n A 1 66 LEU 66 67 67 LEU LEU A . n A 1 67 SER 67 68 68 SER SER A . n A 1 68 THR 68 69 69 THR THR A . n A 1 69 VAL 69 70 70 VAL VAL A . n A 1 70 TYR 70 71 71 TYR TYR A . n A 1 71 THR 71 72 72 THR THR A . n A 1 72 ALA 72 73 73 ALA ALA A . n A 1 73 THR 73 74 74 THR THR A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ALA 75 76 76 ALA ALA A . n A 1 76 THR 76 77 77 THR THR A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 ASP 78 79 79 ASP ASP A . n A 1 79 TYR 79 80 80 TYR TYR A . n A 1 80 MET 80 81 81 MET MET A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 ASP 82 83 83 ASP ASP A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 GLY 84 85 85 GLY GLY A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 GLU 86 87 87 GLU GLU A . n A 1 87 LYS 87 88 88 LYS LYS A . n A 1 88 THR 88 89 89 THR THR A . n A 1 89 VAL 89 90 90 VAL VAL A . n A 1 90 TYR 90 91 91 TYR TYR A . n A 1 91 VAL 91 92 92 VAL VAL A . n A 1 92 VAL 92 93 93 VAL VAL A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 ALA 95 96 96 ALA ALA A . n A 1 96 GLY 96 97 97 GLY GLY A . n A 1 97 LEU 97 98 98 LEU LEU A . n A 1 98 LYS 98 99 99 LYS LYS A . n A 1 99 GLU 99 100 100 GLU GLU A . n A 1 100 ALA 100 101 101 ALA ALA A . n A 1 101 ILE 101 102 102 ILE ILE A . n A 1 102 LYS 102 103 103 LYS LYS A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 ALA 104 105 105 ALA ALA A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 TYR 106 107 107 TYR TYR A . n A 1 107 VAL 107 108 108 VAL VAL A . n A 1 108 GLU 108 109 109 GLU GLU A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 LYS 110 111 111 LYS LYS A . n A 1 111 GLU 111 112 112 GLU GLU A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 PRO 113 114 114 PRO PRO A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 TYR 115 116 116 TYR TYR A . n A 1 116 VAL 116 117 117 VAL VAL A . n A 1 117 VAL 117 118 118 VAL VAL A . n A 1 118 VAL 118 119 119 VAL VAL A . n A 1 119 GLY 119 120 120 GLY GLY A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 ASP 121 122 122 ASP ASP A . n A 1 122 TRP 122 123 123 TRP TRP A . n A 1 123 GLN 123 124 124 GLN GLN A . n A 1 124 VAL 124 125 125 VAL VAL A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 TYR 126 127 127 TYR TYR A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 LYS 128 129 129 LYS LYS A . n A 1 129 PHE 129 130 130 PHE PHE A . n A 1 130 ALA 130 131 131 ALA ALA A . n A 1 131 THR 131 132 132 THR THR A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 THR 133 134 134 THR THR A . n A 1 134 LEU 134 135 135 LEU LEU A . n A 1 135 ALA 135 136 136 ALA ALA A . n A 1 136 ILE 136 137 137 ILE ILE A . n A 1 137 GLN 137 138 138 GLN GLN A . n A 1 138 LYS 138 139 139 LYS LYS A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 ALA 140 141 141 ALA ALA A . n A 1 141 HIS 141 142 142 HIS HIS A . n A 1 142 PHE 142 143 143 PHE PHE A . n A 1 143 ILE 143 144 144 ILE ILE A . n A 1 144 GLY 144 145 145 GLY GLY A . n A 1 145 THR 145 146 146 THR THR A . n A 1 146 ASN 146 147 147 ASN ASN A . n A 1 147 PRO 147 148 148 PRO PRO A . n A 1 148 ASP 148 149 149 ASP ASP A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 ASN 150 151 151 ASN ASN A . n A 1 151 ILE 151 152 152 ILE ILE A . n A 1 152 PRO 152 153 153 PRO PRO A . n A 1 153 THR 153 154 154 THR THR A . n A 1 154 GLU 154 155 155 GLU GLU A . n A 1 155 ARG 155 156 156 ARG ARG A . n A 1 156 GLY 156 157 157 GLY GLY A . n A 1 157 LEU 157 158 158 LEU LEU A . n A 1 158 LEU 158 159 159 LEU LEU A . n A 1 159 PRO 159 160 160 PRO PRO A . n A 1 160 GLY 160 161 161 GLY GLY A . n A 1 161 ALA 161 162 162 ALA ALA A . n A 1 162 GLY 162 163 163 GLY GLY A . n A 1 163 SER 163 164 164 SER SER A . n A 1 164 LEU 164 165 165 LEU LEU A . n A 1 165 ILE 165 166 166 ILE ILE A . n A 1 166 THR 166 167 167 THR THR A . n A 1 167 LEU 167 168 168 LEU LEU A . n A 1 168 LEU 168 169 169 LEU LEU A . n A 1 169 GLU 169 170 170 GLU GLU A . n A 1 170 VAL 170 171 171 VAL VAL A . n A 1 171 ALA 171 172 172 ALA ALA A . n A 1 172 THR 172 173 173 THR THR A . n A 1 173 ARG 173 174 174 ARG ARG A . n A 1 174 VAL 174 175 175 VAL VAL A . n A 1 175 LYS 175 176 176 LYS LYS A . n A 1 176 PRO 176 177 177 PRO PRO A . n A 1 177 VAL 177 178 178 VAL VAL A . n A 1 178 TYR 178 179 179 TYR TYR A . n A 1 179 ILE 179 180 180 ILE ILE A . n A 1 180 GLY 180 181 181 GLY GLY A . n A 1 181 LYS 181 182 182 LYS LYS A . n A 1 182 PRO 182 183 183 PRO PRO A . n A 1 183 ASN 183 184 184 ASN ASN A . n A 1 184 ALA 184 185 185 ALA ALA A . n A 1 185 ILE 185 186 186 ILE ILE A . n A 1 186 ILE 186 187 187 ILE ILE A . n A 1 187 MET 187 188 188 MET MET A . n A 1 188 ASP 188 189 189 ASP ASP A . n A 1 189 LYS 189 190 190 LYS LYS A . n A 1 190 ALA 190 191 191 ALA ALA A . n A 1 191 VAL 191 192 192 VAL VAL A . n A 1 192 GLU 192 193 193 GLU GLU A . n A 1 193 HIS 193 194 194 HIS HIS A . n A 1 194 LEU 194 195 195 LEU LEU A . n A 1 195 GLY 195 196 196 GLY GLY A . n A 1 196 LEU 196 197 197 LEU LEU A . n A 1 197 GLU 197 198 198 GLU GLU A . n A 1 198 ARG 198 199 199 ARG ARG A . n A 1 199 GLU 199 200 200 GLU GLU A . n A 1 200 GLU 200 201 201 GLU GLU A . n A 1 201 LEU 201 202 202 LEU LEU A . n A 1 202 ILE 202 203 203 ILE ILE A . n A 1 203 MET 203 204 204 MET MET A . n A 1 204 VAL 204 205 205 VAL VAL A . n A 1 205 GLY 205 206 206 GLY GLY A . n A 1 206 ASP 206 207 207 ASP ASP A . n A 1 207 ASN 207 208 208 ASN ASN A . n A 1 208 TYR 208 209 209 TYR TYR A . n A 1 209 LEU 209 210 210 LEU LEU A . n A 1 210 THR 210 211 211 THR THR A . n A 1 211 ASP 211 212 212 ASP ASP A . n A 1 212 ILE 212 213 213 ILE ILE A . n A 1 213 ARG 213 214 214 ARG ARG A . n A 1 214 ALA 214 215 215 ALA ALA A . n A 1 215 GLY 215 216 216 GLY GLY A . n A 1 216 ILE 216 217 217 ILE ILE A . n A 1 217 ASP 217 218 218 ASP ASP A . n A 1 218 ASN 218 219 219 ASN ASN A . n A 1 219 GLY 219 220 220 GLY GLY A . n A 1 220 ILE 220 221 221 ILE ILE A . n A 1 221 PRO 221 222 222 PRO PRO A . n A 1 222 THR 222 223 223 THR THR A . n A 1 223 LEU 223 224 224 LEU LEU A . n A 1 224 LEU 224 225 225 LEU LEU A . n A 1 225 VAL 225 226 226 VAL VAL A . n A 1 226 THR 226 227 227 THR THR A . n A 1 227 THR 227 228 228 THR THR A . n A 1 228 GLY 228 229 229 GLY GLY A . n A 1 229 PHE 229 230 230 PHE PHE A . n A 1 230 THR 230 231 231 THR THR A . n A 1 231 LYS 231 232 232 LYS LYS A . n A 1 232 ALA 232 233 233 ALA ALA A . n A 1 233 GLU 233 234 234 GLU GLU A . n A 1 234 GLU 234 235 235 GLU GLU A . n A 1 235 VAL 235 236 236 VAL VAL A . n A 1 236 ALA 236 237 237 ALA ALA A . n A 1 237 GLY 237 238 238 GLY GLY A . n A 1 238 LEU 238 239 239 LEU LEU A . n A 1 239 PRO 239 240 240 PRO PRO A . n A 1 240 ILE 240 241 241 ILE ILE A . n A 1 241 ALA 241 242 242 ALA ALA A . n A 1 242 PRO 242 243 243 PRO PRO A . n A 1 243 THR 243 244 244 THR THR A . n A 1 244 HIS 244 245 245 HIS HIS A . n A 1 245 VAL 245 246 246 VAL VAL A . n A 1 246 VAL 246 247 247 VAL VAL A . n A 1 247 SER 247 248 248 SER SER A . n A 1 248 SER 248 249 249 SER SER A . n A 1 249 LEU 249 250 250 LEU LEU A . n A 1 250 ALA 250 251 251 ALA ALA A . n A 1 251 GLU 251 252 252 GLU GLU A . n A 1 252 TRP 252 253 253 TRP TRP A . n A 1 253 ASP 253 254 254 ASP ASP A . n A 1 254 PHE 254 255 255 PHE PHE A . n A 1 255 ASP 255 256 256 ASP ASP A . n A 1 256 GLU 256 257 ? ? ? A . n A 1 257 ASN 257 258 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 500 500 MG MG A . C 3 HOH 1 501 1 HOH TIP A . C 3 HOH 2 502 2 HOH TIP A . C 3 HOH 3 503 3 HOH TIP A . C 3 HOH 4 504 4 HOH TIP A . C 3 HOH 5 505 5 HOH TIP A . C 3 HOH 6 506 6 HOH TIP A . C 3 HOH 7 507 7 HOH TIP A . C 3 HOH 8 508 8 HOH TIP A . C 3 HOH 9 509 9 HOH TIP A . C 3 HOH 10 510 10 HOH TIP A . C 3 HOH 11 511 11 HOH TIP A . C 3 HOH 12 512 12 HOH TIP A . C 3 HOH 13 513 13 HOH TIP A . C 3 HOH 14 514 14 HOH TIP A . C 3 HOH 15 515 15 HOH TIP A . C 3 HOH 16 516 16 HOH TIP A . C 3 HOH 17 517 17 HOH TIP A . C 3 HOH 18 518 18 HOH TIP A . C 3 HOH 19 519 19 HOH TIP A . C 3 HOH 20 520 20 HOH TIP A . C 3 HOH 21 521 21 HOH TIP A . C 3 HOH 22 522 22 HOH TIP A . C 3 HOH 23 523 23 HOH TIP A . C 3 HOH 24 524 24 HOH TIP A . C 3 HOH 25 525 25 HOH TIP A . C 3 HOH 26 526 26 HOH TIP A . C 3 HOH 27 527 27 HOH TIP A . C 3 HOH 28 528 28 HOH TIP A . C 3 HOH 29 529 29 HOH TIP A . C 3 HOH 30 530 30 HOH TIP A . C 3 HOH 31 531 31 HOH TIP A . C 3 HOH 32 532 32 HOH TIP A . C 3 HOH 33 533 33 HOH TIP A . C 3 HOH 34 534 34 HOH TIP A . C 3 HOH 35 535 35 HOH TIP A . C 3 HOH 36 536 36 HOH TIP A . C 3 HOH 37 537 37 HOH TIP A . C 3 HOH 38 538 38 HOH TIP A . C 3 HOH 39 539 39 HOH TIP A . C 3 HOH 40 540 40 HOH TIP A . C 3 HOH 41 541 41 HOH TIP A . C 3 HOH 42 542 42 HOH TIP A . C 3 HOH 43 543 43 HOH TIP A . C 3 HOH 44 544 44 HOH TIP A . C 3 HOH 45 545 45 HOH TIP A . C 3 HOH 46 546 46 HOH TIP A . C 3 HOH 47 547 47 HOH TIP A . C 3 HOH 48 548 48 HOH TIP A . C 3 HOH 49 549 49 HOH TIP A . C 3 HOH 50 550 50 HOH TIP A . C 3 HOH 51 551 51 HOH TIP A . C 3 HOH 52 552 52 HOH TIP A . C 3 HOH 53 553 53 HOH TIP A . C 3 HOH 54 554 54 HOH TIP A . C 3 HOH 55 555 55 HOH TIP A . C 3 HOH 56 556 56 HOH TIP A . C 3 HOH 57 557 57 HOH TIP A . C 3 HOH 58 558 58 HOH TIP A . C 3 HOH 59 559 59 HOH TIP A . C 3 HOH 60 560 60 HOH TIP A . C 3 HOH 61 561 61 HOH TIP A . C 3 HOH 62 562 62 HOH TIP A . C 3 HOH 63 563 63 HOH TIP A . C 3 HOH 64 564 64 HOH TIP A . C 3 HOH 65 565 65 HOH TIP A . C 3 HOH 66 566 66 HOH TIP A . C 3 HOH 67 567 67 HOH TIP A . C 3 HOH 68 568 68 HOH TIP A . C 3 HOH 69 569 69 HOH TIP A . C 3 HOH 70 570 70 HOH TIP A . C 3 HOH 71 571 71 HOH TIP A . C 3 HOH 72 572 72 HOH TIP A . C 3 HOH 73 573 73 HOH TIP A . C 3 HOH 74 574 74 HOH TIP A . C 3 HOH 75 575 75 HOH TIP A . C 3 HOH 76 576 76 HOH TIP A . C 3 HOH 77 577 77 HOH TIP A . C 3 HOH 78 578 78 HOH TIP A . C 3 HOH 79 579 79 HOH TIP A . C 3 HOH 80 580 80 HOH TIP A . C 3 HOH 81 581 81 HOH TIP A . C 3 HOH 82 582 82 HOH TIP A . C 3 HOH 83 583 83 HOH TIP A . C 3 HOH 84 584 84 HOH TIP A . C 3 HOH 85 585 85 HOH TIP A . C 3 HOH 86 586 86 HOH TIP A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 59 ? CG ? A GLN 58 CG 2 1 Y 1 A GLN 59 ? CD ? A GLN 58 CD 3 1 Y 1 A GLN 59 ? OE1 ? A GLN 58 OE1 4 1 Y 1 A GLN 59 ? NE2 ? A GLN 58 NE2 5 1 Y 1 A ARG 174 ? CG ? A ARG 173 CG 6 1 Y 1 A ARG 174 ? CD ? A ARG 173 CD 7 1 Y 1 A ARG 174 ? NE ? A ARG 173 NE 8 1 Y 1 A ARG 174 ? CZ ? A ARG 173 CZ 9 1 Y 1 A ARG 174 ? NH1 ? A ARG 173 NH1 10 1 Y 1 A ARG 174 ? NH2 ? A ARG 173 NH2 11 1 Y 1 A PRO 240 ? CG ? A PRO 239 CG 12 1 Y 1 A PRO 240 ? CD ? A PRO 239 CD 13 1 Y 1 A ILE 241 ? CG1 ? A ILE 240 CG1 14 1 Y 1 A ILE 241 ? CG2 ? A ILE 240 CG2 15 1 Y 1 A ILE 241 ? CD1 ? A ILE 240 CD1 16 1 Y 1 A PRO 243 ? CG ? A PRO 242 CG 17 1 Y 1 A PRO 243 ? CD ? A PRO 242 CD # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1YDF _cell.length_a 74.430 _cell.length_b 99.929 _cell.length_c 39.841 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YDF _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YDF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_details 'MgCl2, Tris HCL, PEG3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 8.50' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-11-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRRORS _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.97938 1.0 3 0.95 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.97938, 0.95' # _reflns.entry_id 1YDF _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 11211 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI 13.4000 _reflns.B_iso_Wilson_estimate 49.30 _reflns.pdbx_redundancy 12.190 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 86.0 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.000 _reflns_shell.pdbx_redundancy 8.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YDF _refine.ls_number_reflns_obs 9234 _refine.ls_number_reflns_all 11211 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 198655.040 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.49 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.267 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 925 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 39.40 _refine.aniso_B[1][1] -1.97000 _refine.aniso_B[2][2] -12.92000 _refine.aniso_B[3][3] 14.89000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.39 _refine.solvent_model_param_bsol 44.72 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'the electron density for the side chain atoms listed in remark 470 was weak.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YDF _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1952 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 2039 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 41.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.81 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.170 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.930 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.800 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.730 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1179 _refine_ls_shell.R_factor_R_work 0.305 _refine_ls_shell.percent_reflns_obs 82.30 _refine_ls_shell.R_factor_R_free 0.343 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 8.80 _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPOLOGY.INFILE.1.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM TOPOLOGY.INFILE.2.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM TOPOLOGY.INFILE.3.TOP 'X-RAY DIFFRACTION' 4 ? TOPOLOGY.INFILE.4.TOP 'X-RAY DIFFRACTION' 5 ? TOPOLOGY.INFILE.5.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YDF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YDF _struct.title 'Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YDF _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Structural genomics, Protein structure initiative, Hypothetical protein, NYSGXRC, hydrolase haloacid dehalogenase-like family, PSI, New York SGX Research Center for Structural Genomics, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97Q24_STRPN _struct_ref.pdbx_db_accession Q97Q24 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YKGYLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTVYTATLATIDYMND LGLEKTVYVVGEAGLKEAIKAAGYVEDKEKPAYVVVGLDWQVDYEKFATATLAIQKGAHFIGTNPDLNIPTERGLLPGAG SLITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEVAGLPIAP THVVSSLAEWDFDEN ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YDF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 257 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97Q24 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 257 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YDF SER A 1 ? UNP Q97Q24 ? ? 'cloning artifact' 2 1 1 1YDF LEU A 2 ? UNP Q97Q24 ? ? 'cloning artifact' 3 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 21 ? ARG A 34 ? ILE A 22 ARG A 35 1 ? 14 HELX_P HELX_P2 2 THR A 48 ? PHE A 60 ? THR A 49 PHE A 61 1 ? 13 HELX_P HELX_P3 3 PRO A 65 ? SER A 67 ? PRO A 66 SER A 68 5 ? 3 HELX_P HELX_P4 4 ALA A 72 ? GLY A 84 ? ALA A 73 GLY A 85 1 ? 13 HELX_P HELX_P5 5 GLU A 94 ? ALA A 104 ? GLU A 95 ALA A 105 1 ? 11 HELX_P HELX_P6 6 ASP A 125 ? LYS A 138 ? ASP A 126 LYS A 139 1 ? 14 HELX_P HELX_P7 8 ASN A 183 ? GLY A 195 ? ASN A 184 GLY A 196 1 ? 13 HELX_P HELX_P8 9 GLU A 197 ? GLU A 199 ? GLU A 198 GLU A 200 5 ? 3 HELX_P HELX_P9 10 THR A 210 ? ASP A 217 ? THR A 211 ASP A 218 1 ? 8 HELX_P HELX_P10 11 LYS A 231 ? VAL A 235 ? LYS A 232 VAL A 236 5 ? 5 HELX_P HELX_P11 12 SER A 248 ? TRP A 252 ? SER A 249 TRP A 253 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 9 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 10 A MG 500 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc2 metalc ? ? A ASP 11 O ? ? ? 1_555 B MG . MG ? ? A ASP 12 A MG 500 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc3 metalc ? ? A ASP 206 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 207 A MG 500 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 500 A HOH 538 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 500 A HOH 585 1_555 ? ? ? ? ? ? ? 1.891 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 500 A HOH 586 1_555 ? ? ? ? ? ? ? 1.951 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 9 ? A ASP 10 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? A ASP 11 ? A ASP 12 ? 1_555 68.4 ? 2 OD1 ? A ASP 9 ? A ASP 10 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 OD2 ? A ASP 206 ? A ASP 207 ? 1_555 55.0 ? 3 O ? A ASP 11 ? A ASP 12 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 OD2 ? A ASP 206 ? A ASP 207 ? 1_555 62.6 ? 4 OD1 ? A ASP 9 ? A ASP 10 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 538 ? 1_555 77.6 ? 5 O ? A ASP 11 ? A ASP 12 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 538 ? 1_555 144.1 ? 6 OD2 ? A ASP 206 ? A ASP 207 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 538 ? 1_555 88.8 ? 7 OD1 ? A ASP 9 ? A ASP 10 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 585 ? 1_555 72.0 ? 8 O ? A ASP 11 ? A ASP 12 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 585 ? 1_555 89.6 ? 9 OD2 ? A ASP 206 ? A ASP 207 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 585 ? 1_555 125.8 ? 10 O ? C HOH . ? A HOH 538 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 585 ? 1_555 90.7 ? 11 OD1 ? A ASP 9 ? A ASP 10 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 586 ? 1_555 122.2 ? 12 O ? A ASP 11 ? A ASP 12 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 586 ? 1_555 66.2 ? 13 OD2 ? A ASP 206 ? A ASP 207 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 586 ? 1_555 73.1 ? 14 O ? C HOH . ? A HOH 538 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 586 ? 1_555 128.5 ? 15 O ? C HOH . ? A HOH 585 ? 1_555 MG ? B MG . ? A MG 500 ? 1_555 O ? C HOH . ? A HOH 586 ? 1_555 139.0 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 181 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 182 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 182 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 183 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 5 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 69 ? THR A 71 ? VAL A 70 THR A 72 A 2 TYR A 38 ? THR A 42 ? TYR A 39 THR A 43 A 3 GLY A 5 ? ILE A 8 ? GLY A 6 ILE A 9 A 4 LEU A 201 ? GLY A 205 ? LEU A 202 GLY A 206 A 5 THR A 222 ? VAL A 225 ? THR A 223 VAL A 226 A 6 HIS A 244 ? VAL A 246 ? HIS A 245 VAL A 247 B 1 TYR A 15 ? LYS A 16 ? TYR A 16 LYS A 17 B 2 ASP A 19 ? ARG A 20 ? ASP A 20 ARG A 21 C 1 VAL A 107 ? GLU A 108 ? VAL A 108 GLU A 109 C 2 THR A 88 ? VAL A 92 ? THR A 89 VAL A 93 C 3 TYR A 115 ? VAL A 118 ? TYR A 116 VAL A 119 C 4 HIS A 141 ? GLY A 144 ? HIS A 142 GLY A 145 C 5 VAL A 177 ? TYR A 178 ? VAL A 178 TYR A 179 D 1 ASN A 150 ? THR A 153 ? ASN A 151 THR A 154 D 2 GLY A 156 ? PRO A 159 ? GLY A 157 PRO A 160 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 70 ? O TYR A 71 N PHE A 40 ? N PHE A 41 A 2 3 O LEU A 39 ? O LEU A 40 N TYR A 6 ? N TYR A 7 A 3 4 N LEU A 7 ? N LEU A 8 O VAL A 204 ? O VAL A 205 A 4 5 N GLY A 205 ? N GLY A 206 O VAL A 225 ? O VAL A 226 A 5 6 N THR A 222 ? N THR A 223 O HIS A 244 ? O HIS A 245 B 1 2 N LYS A 16 ? N LYS A 17 O ASP A 19 ? O ASP A 20 C 1 2 O VAL A 107 ? O VAL A 108 N VAL A 89 ? N VAL A 90 C 2 3 N VAL A 92 ? N VAL A 93 O VAL A 117 ? O VAL A 118 C 3 4 N VAL A 118 ? N VAL A 119 O ILE A 143 ? O ILE A 144 C 4 5 N PHE A 142 ? N PHE A 143 O VAL A 177 ? O VAL A 178 D 1 2 N THR A 153 ? N THR A 154 O GLY A 156 ? O GLY A 157 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 500 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 9 ? ASP A 10 . ? 1_555 ? 2 AC1 6 ASP A 11 ? ASP A 12 . ? 1_555 ? 3 AC1 6 ASP A 206 ? ASP A 207 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 538 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 585 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 586 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 11 ? ? -105.30 -73.54 2 1 PRO A 23 ? ? -26.92 -49.65 3 1 ARG A 35 ? ? -62.00 0.27 4 1 LEU A 86 ? ? -56.59 175.40 5 1 ASP A 149 ? ? -37.49 121.19 6 1 PRO A 183 ? ? -96.47 37.05 7 1 THR A 227 ? ? -72.19 40.35 8 1 PHE A 230 ? ? -62.55 -72.43 9 1 PRO A 240 ? ? -61.09 -105.33 10 1 PHE A 255 ? ? -39.98 -87.72 # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC _pdbx_SG_project.id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 257 ? A GLU 256 2 1 Y 1 A ASN 258 ? A ASN 257 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MG MG MG N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _atom_sites.entry_id 1YDF _atom_sites.fract_transf_matrix[1][1] 0.013435 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010007 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025100 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_