HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-DEC-04 1YEM TITLE CONSERVED HYPOTHETICAL PROTEIN PFU-838710-001 FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN PFU-838710-001; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 6 GENE: PF0863; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, KEYWDS 2 SECSG, PROTEIN STRUCTURE INITIATIVE, PSI, CONSERVED HYPOTHETICAL KEYWDS 3 PROTEIN, PYROCOCCUS FURIOSUS, HYPERTHERMOPHILE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,J.CHANG,A.SHAH,J.D.NG,Z.-J.LIU,L.CHEN,D.LEE,W.TEMPEL, AUTHOR 2 J.L.PRAISSMAN,D.LIN,W.B.ARENDALL III,J.S.RICHARDSON,D.C.RICHARDSON, AUTHOR 3 F.E.JENNEY JR.,M.W.W.ADAMS,J.P.ROSE,B.-C.WANG,SOUTHEAST AUTHOR 4 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 6 14-FEB-24 1YEM 1 REMARK LINK REVDAT 5 11-OCT-17 1YEM 1 REMARK REVDAT 4 28-JUN-17 1YEM 1 DBREF REVDAT 3 24-FEB-09 1YEM 1 VERSN REVDAT 2 14-NOV-06 1YEM 1 HEADER REVDAT 1 11-JAN-05 1YEM 0 SPRSDE 11-JAN-05 1YEM 1XKC JRNL AUTH H.YANG,J.CHANG,A.SHAH,J.D.NG,Z.-J.LIU,L.CHEN,D.LEE,W.TEMPEL, JRNL AUTH 2 J.L.PRAISSMAN,D.LIN,W.B.ARENDALL III,J.S.RICHARDSON, JRNL AUTH 3 D.C.RICHARDSON,F.E.JENNEY JR.,M.W.W.ADAMS,J.P.ROSE,B.-C.WANG JRNL TITL CONSERVED HYPOTHETICAL PROTEIN PFU-838710-001 FROM JRNL TITL 2 PYROCOCCUS FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 28102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 39.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28300 REMARK 3 B22 (A**2) : 1.28300 REMARK 3 B33 (A**2) : -1.92500 REMARK 3 B12 (A**2) : 0.64200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2754 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2525 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3726 ; 1.153 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5835 ; 0.683 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.755 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;31.183 ;24.825 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;13.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.053 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3045 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 413 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2322 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1310 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1712 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.053 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1693 ; 2.216 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 666 ; 0.422 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2657 ; 3.417 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2230 ; 1.912 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1218 ; 1.914 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2318 ; 0.559 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 3.141 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3605 ; 1.440 ; 3.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM DIHYDROGEN PHOSPHATE, 1.2M REMARK 280 POTASSIUM DIHYDROGEN SULFATE, 0.1M TRIS, PH 7.9, MODIFIED REMARK 280 MICROBATCH, TEMPERATURE 313K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.53000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.06000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.06000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 LEU A 166 REMARK 465 SER A 167 REMARK 465 GLY A 168 REMARK 465 ARG A 169 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 167 REMARK 465 GLY B 168 REMARK 465 ARG B 169 REMARK 465 SER B 170 REMARK 465 SER B 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 53 CD CE NZ REMARK 470 LYS A 60 NZ REMARK 470 LYS A 93 CE NZ REMARK 470 LYS A 106 CE NZ REMARK 470 GLU A 127 CD OE1 OE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 150 CE NZ REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 ARG B 27 CD NE CZ NH1 NH2 REMARK 470 LYS B 53 CD CE NZ REMARK 470 LYS B 54 NZ REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 LYS B 88 NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 99 CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 GLU B 127 CD OE1 OE2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 139 NZ REMARK 470 LYS B 145 CE NZ REMARK 470 LYS B 150 CE NZ REMARK 470 ARG B 157 NE CZ NH1 NH2 REMARK 470 ILE B 163 CD1 REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 LEU B 166 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 204 UNK UNX A 205 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 26 -68.18 -123.10 REMARK 500 PRO A 41 45.61 -100.18 REMARK 500 ILE A 120 -45.75 -134.12 REMARK 500 ASP A 131 55.98 -102.17 REMARK 500 SER A 132 76.88 -166.97 REMARK 500 ASN B 22 70.69 37.80 REMARK 500 ILE B 120 -60.11 -120.55 REMARK 500 SER B 132 84.28 -154.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A1201 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 108 ND2 REMARK 620 2 MET A 146 SD 101.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-838710-001 RELATED DB: TARGETDB DBREF 1YEM A 2 171 UNP Q8U2H2 Q8U2H2_PYRFU 2 171 DBREF 1YEM B 2 171 UNP Q8U2H2 Q8U2H2_PYRFU 2 171 SEQADV 1YEM MET A -7 UNP Q8U2H2 INITIATING METHIONINE SEQADV 1YEM HIS A -6 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS A -5 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS A -4 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS A -3 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS A -2 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS A -1 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM GLY A 0 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM SER A 1 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM MET B -7 UNP Q8U2H2 INITIATING METHIONINE SEQADV 1YEM HIS B -6 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS B -5 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS B -4 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS B -3 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS B -2 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM HIS B -1 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM GLY B 0 UNP Q8U2H2 EXPRESSION TAG SEQADV 1YEM SER B 1 UNP Q8U2H2 EXPRESSION TAG SEQRES 1 A 179 MET HIS HIS HIS HIS HIS HIS GLY SER GLU VAL GLU ILE SEQRES 2 A 179 LYS PHE LYS ILE LYS LEU GLU ASP PHE LEU HIS THR LEU SEQRES 3 A 179 ASN THR PHE ASN PRO GLU PHE VAL ARG TYR GLU GLU GLN SEQRES 4 A 179 GLU ASP VAL TYR PHE GLU VAL PRO ARG PRO LYS LEU LEU SEQRES 5 A 179 ARG ILE ARG GLY VAL HIS ASN LEU LYS LYS TYR TYR LEU SEQRES 6 A 179 THR PHE LYS GLU ILE LEU ASP GLU ASN ASN GLU GLU PHE SEQRES 7 A 179 TYR GLU VAL GLU PHE GLU ILE GLY ASP PHE GLU LYS ALA SEQRES 8 A 179 VAL GLU VAL PHE LYS ARG LEU GLY PHE LYS ILE GLN ALA SEQRES 9 A 179 THR ILE LYS LYS LYS ARG TRP VAL TYR LYS LEU ASN GLY SEQRES 10 A 179 VAL THR LEU GLU VAL ASN ARG VAL GLU GLY ILE GLY ASP SEQRES 11 A 179 PHE VAL ASP ILE GLU VAL ILE SER ASP SER PRO GLU GLU SEQRES 12 A 179 ALA LYS GLU LYS ILE TRP GLU VAL ALA LYS MET LEU GLY SEQRES 13 A 179 LEU LYS GLU GLU ASP VAL GLU PRO ARG LEU TYR LEU GLU SEQRES 14 A 179 LEU ILE ASN GLU LEU SER GLY ARG SER SER SEQRES 1 B 179 MET HIS HIS HIS HIS HIS HIS GLY SER GLU VAL GLU ILE SEQRES 2 B 179 LYS PHE LYS ILE LYS LEU GLU ASP PHE LEU HIS THR LEU SEQRES 3 B 179 ASN THR PHE ASN PRO GLU PHE VAL ARG TYR GLU GLU GLN SEQRES 4 B 179 GLU ASP VAL TYR PHE GLU VAL PRO ARG PRO LYS LEU LEU SEQRES 5 B 179 ARG ILE ARG GLY VAL HIS ASN LEU LYS LYS TYR TYR LEU SEQRES 6 B 179 THR PHE LYS GLU ILE LEU ASP GLU ASN ASN GLU GLU PHE SEQRES 7 B 179 TYR GLU VAL GLU PHE GLU ILE GLY ASP PHE GLU LYS ALA SEQRES 8 B 179 VAL GLU VAL PHE LYS ARG LEU GLY PHE LYS ILE GLN ALA SEQRES 9 B 179 THR ILE LYS LYS LYS ARG TRP VAL TYR LYS LEU ASN GLY SEQRES 10 B 179 VAL THR LEU GLU VAL ASN ARG VAL GLU GLY ILE GLY ASP SEQRES 11 B 179 PHE VAL ASP ILE GLU VAL ILE SER ASP SER PRO GLU GLU SEQRES 12 B 179 ALA LYS GLU LYS ILE TRP GLU VAL ALA LYS MET LEU GLY SEQRES 13 B 179 LEU LYS GLU GLU ASP VAL GLU PRO ARG LEU TYR LEU GLU SEQRES 14 B 179 LEU ILE ASN GLU LEU SER GLY ARG SER SER HET PT A1201 1 HET UNX A 202 1 HET UNX A 203 1 HET UNX A 204 1 HET UNX A 205 1 HET UNX B1202 1 HET UNX B1203 1 HET UNX B1204 1 HETNAM PT PLATINUM (II) ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 PT PT 2+ FORMUL 4 UNX 7(X) FORMUL 11 HOH *17(H2 O) HELIX 1 1 LYS A 10 THR A 20 1 11 HELIX 2 2 ASP A 79 LEU A 90 1 12 HELIX 3 3 SER A 132 LEU A 147 1 16 HELIX 4 4 LYS A 150 VAL A 154 5 5 HELIX 5 5 LYS B 10 ASN B 22 1 13 HELIX 6 6 ASP B 79 LEU B 90 1 12 HELIX 7 7 SER B 132 LEU B 147 1 16 HELIX 8 8 LYS B 150 VAL B 154 5 5 HELIX 9 9 LEU B 158 LEU B 166 1 9 SHEET 1 A 9 GLU A 2 ILE A 9 0 SHEET 2 A 9 GLU A 69 ILE A 77 -1 O PHE A 70 N GLU A 2 SHEET 3 A 9 LYS A 54 ILE A 62 -1 N PHE A 59 O VAL A 73 SHEET 4 A 9 LYS A 42 VAL A 49 -1 N ARG A 45 O THR A 58 SHEET 5 A 9 GLU A 24 PHE A 36 -1 N GLU A 32 O GLY A 48 SHEET 6 A 9 ILE A 94 LEU A 107 -1 O ALA A 96 N TYR A 35 SHEET 7 A 9 VAL A 110 VAL A 117 -1 O LEU A 112 N TYR A 105 SHEET 8 A 9 GLY A 121 ILE A 129 -1 O PHE A 123 N ASN A 115 SHEET 9 A 9 GLU A 2 ILE A 9 -1 N VAL A 3 O VAL A 128 SHEET 1 B 9 GLU B 2 ILE B 9 0 SHEET 2 B 9 GLU B 69 ILE B 77 -1 O PHE B 70 N GLU B 2 SHEET 3 B 9 LYS B 54 ILE B 62 -1 N PHE B 59 O VAL B 73 SHEET 4 B 9 LYS B 42 VAL B 49 -1 N VAL B 49 O LYS B 54 SHEET 5 B 9 GLU B 24 PHE B 36 -1 N GLU B 32 O GLY B 48 SHEET 6 B 9 ILE B 94 LEU B 107 -1 O ALA B 96 N TYR B 35 SHEET 7 B 9 VAL B 110 VAL B 117 -1 O LEU B 112 N TYR B 105 SHEET 8 B 9 GLY B 121 ILE B 129 -1 O PHE B 123 N ASN B 115 SHEET 9 B 9 GLU B 2 ILE B 9 -1 N VAL B 3 O VAL B 128 LINK ND2 ASN A 108 PT PT A1201 1555 1555 3.47 LINK SD MET A 146 PT PT A1201 1555 1555 1.96 CISPEP 1 ARG A 40 PRO A 41 0 -2.35 CISPEP 2 ARG B 40 PRO B 41 0 4.82 SITE 1 AC1 2 ASN A 108 MET A 146 SITE 1 AC2 1 LYS A 6 SITE 1 AC3 4 ARG A 47 LYS A 100 ARG A 102 UNX A 204 SITE 1 AC4 3 ARG A 45 UNX A 203 UNX A 205 SITE 1 AC5 3 ARG A 45 ARG A 47 UNX A 204 SITE 1 AC6 3 ARG B 47 LYS B 100 ARG B 102 CRYST1 97.016 97.016 127.590 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010308 0.005951 0.000000 0.00000 SCALE2 0.000000 0.011902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007838 0.00000