HEADER UNKNOWN FUNCTION 07-JAN-05 1YHD TITLE THE SOLUTION STRUCTURE OF YGGX FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0269 PROTEIN YGGX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YGGX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HELIX BUNDLE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.OSBORNE,N.SIDDIQUI,D.LANDGRAF,P.J.POMPOSIELLO,K.GEHRING REVDAT 4 02-MAR-22 1YHD 1 REMARK SEQADV REVDAT 3 24-FEB-09 1YHD 1 VERSN REVDAT 2 26-JUL-05 1YHD 1 JRNL REVDAT 1 18-JAN-05 1YHD 0 JRNL AUTH M.J.OSBORNE,N.SIDDIQUI,D.LANDGRAF,P.J.POMPOSIELLO,K.GEHRING JRNL TITL THE SOLUTION STRUCTURE OF THE OXIDATIVE STRESS-RELATED JRNL TITL 2 PROTEIN YGGX FROM ESCHERICHIA COLI. JRNL REF PROTEIN SCI. V. 14 1673 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15883188 JRNL DOI 10.1110/PS.051358105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, CYANA 2, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUNTERT (CYANA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 2059 REMARK 3 DISTANCE CONSTRAINTS, 72 DIHEDRAL ANGLE CONSTRAINTS AND 42 REMARK 3 RESIDUAL DIPOLAR COUPLING RESTRAINTS. THE C-TERMINAL HIS TAG REMARK 3 (RESIDUES 93-100) HAS BEEN REMOVED FORM THE COORDINATES. REMARK 4 REMARK 4 1YHD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031511. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.3; 6.3 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM YGGX U-15N,13C, 50MM REMARK 210 PHOSPHATE, 150MM NACL, 90% H2O, REMARK 210 10% D2O; 0.8MM YGGX U-15N,13C, REMARK 210 50MM PHOSPHATE, 150MM NACL, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_ROESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.1.4 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED, BACK CALCULATED DATA REMARK 210 AGREE WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM, STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY, STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 93 REMARK 465 GLU A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 30 H GLU A 34 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 57 103.14 -160.17 REMARK 500 1 GLU A 77 59.28 -68.02 REMARK 500 1 ASP A 90 -40.61 -170.70 REMARK 500 2 SER A 36 170.07 -57.50 REMARK 500 2 ASN A 57 96.12 -160.12 REMARK 500 2 GLU A 77 59.29 -67.31 REMARK 500 2 VAL A 81 73.12 -67.51 REMARK 500 3 GLN A 18 179.10 -57.90 REMARK 500 3 LYS A 55 62.58 62.09 REMARK 500 3 GLU A 77 57.56 -65.53 REMARK 500 3 GLU A 80 -30.78 -178.93 REMARK 500 3 PRO A 88 172.30 -55.46 REMARK 500 4 GLU A 77 58.35 -65.84 REMARK 500 4 VAL A 81 30.57 -91.27 REMARK 500 5 GLU A 16 -177.48 -62.63 REMARK 500 5 SER A 36 174.11 -57.93 REMARK 500 5 LYS A 55 64.46 63.18 REMARK 500 5 GLU A 77 58.59 -68.18 REMARK 500 5 GLU A 80 -35.41 -178.81 REMARK 500 5 VAL A 81 68.70 -69.67 REMARK 500 5 ASP A 90 83.17 60.66 REMARK 500 5 LYS A 91 166.57 62.47 REMARK 500 6 LYS A 55 62.13 63.98 REMARK 500 6 ASN A 57 101.28 -160.34 REMARK 500 6 GLU A 77 60.76 -68.10 REMARK 500 6 GLU A 80 71.67 54.45 REMARK 500 7 GLU A 77 57.92 -68.78 REMARK 500 7 GLU A 80 61.65 -174.53 REMARK 500 7 PRO A 88 74.21 -69.94 REMARK 500 7 ASP A 90 -73.10 69.69 REMARK 500 7 LYS A 91 -33.94 71.71 REMARK 500 8 PRO A 24 -173.58 -44.61 REMARK 500 8 LYS A 55 63.07 62.94 REMARK 500 8 GLU A 77 55.45 -66.17 REMARK 500 8 LYS A 79 20.97 -79.06 REMARK 500 8 GLU A 80 -42.31 -140.10 REMARK 500 9 LYS A 55 63.55 62.77 REMARK 500 9 GLU A 77 60.25 -66.94 REMARK 500 9 GLU A 80 85.58 64.36 REMARK 500 9 ASP A 90 175.21 59.09 REMARK 500 10 GLN A 18 -179.66 -64.54 REMARK 500 10 GLU A 77 58.41 -68.25 REMARK 500 10 GLU A 80 79.02 59.44 REMARK 500 11 LYS A 55 60.42 68.07 REMARK 500 11 GLU A 77 58.54 -68.97 REMARK 500 11 GLU A 80 38.96 -178.86 REMARK 500 11 VAL A 81 64.57 -68.73 REMARK 500 11 ASP A 90 82.43 -166.09 REMARK 500 11 LYS A 91 -176.70 -58.78 REMARK 500 12 SER A 36 173.67 -58.81 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DBREF 1YHD A 3 92 UNP P0A8P3 YGGX_ECOLI 1 90 SEQADV 1YHD MET A 1 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD GLY A 2 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD LEU A 93 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD GLU A 94 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 95 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 96 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 97 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 98 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 99 UNP P0A8P3 CLONING ARTIFACT SEQADV 1YHD HIS A 100 UNP P0A8P3 CLONING ARTIFACT SEQRES 1 A 100 MET GLY SER ARG THR ILE PHE CYS THR PHE LEU GLN ARG SEQRES 2 A 100 GLU ALA GLU GLY GLN ASP PHE GLN LEU TYR PRO GLY GLU SEQRES 3 A 100 LEU GLY LYS ARG ILE TYR ASN GLU ILE SER LYS GLU ALA SEQRES 4 A 100 TRP ALA GLN TRP GLN HIS LYS GLN THR MET LEU ILE ASN SEQRES 5 A 100 GLU LYS LYS LEU ASN MET MET ASN ALA GLU HIS ARG LYS SEQRES 6 A 100 LEU LEU GLU GLN GLU MET VAL ASN PHE LEU PHE GLU GLY SEQRES 7 A 100 LYS GLU VAL HIS ILE GLU GLY TYR THR PRO GLU ASP LYS SEQRES 8 A 100 LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY A 25 GLU A 34 1 10 HELIX 2 2 LYS A 37 LYS A 54 1 18 HELIX 3 3 ALA A 61 PHE A 74 1 14 SHEET 1 A 2 THR A 5 PHE A 7 0 SHEET 2 A 2 GLU A 14 GLU A 16 -1 O ALA A 15 N ILE A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1