data_1YHF # _entry.id 1YHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YHF RCSB RCSB031513 WWPDB D_1000031513 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC80041 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1YHF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-01-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Lezondra, L.' 2 'Moy, S.' 3 'Collart, F.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of conserved hypothetical SPy1581 protein from Streptococcus pyogenes.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Lezondra, L.' 2 primary 'Moy, S.' 3 primary 'Collart, F.' 4 primary 'Joachimiak, A.' 5 # _cell.length_a 39.897 _cell.length_b 39.897 _cell.length_c 144.758 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 1YHF _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.Int_Tables_number 91 _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 1YHF _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein SPy1581' 12931.826 1 ? ? ? ? 2 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SYINNIEHAKVLDLTQEV(MSE)IEQDQ(MSE)LSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDA(MSE)V TILSGLAEITIDQETYRVAEGQTIV(MSE)PAGIPHALYAVEAFQ(MSE)LLVVVKPEA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSYINNIEHAKVLDLTQEVMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQETY RVAEGQTIVMPAGIPHALYAVEAFQMLLVVVKPEA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC80041 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 TYR n 1 7 ILE n 1 8 ASN n 1 9 ASN n 1 10 ILE n 1 11 GLU n 1 12 HIS n 1 13 ALA n 1 14 LYS n 1 15 VAL n 1 16 LEU n 1 17 ASP n 1 18 LEU n 1 19 THR n 1 20 GLN n 1 21 GLU n 1 22 VAL n 1 23 MSE n 1 24 ILE n 1 25 GLU n 1 26 GLN n 1 27 ASP n 1 28 GLN n 1 29 MSE n 1 30 LEU n 1 31 SER n 1 32 ARG n 1 33 THR n 1 34 LEU n 1 35 VAL n 1 36 GLN n 1 37 ARG n 1 38 GLN n 1 39 ASP n 1 40 LEU n 1 41 GLY n 1 42 ILE n 1 43 THR n 1 44 VAL n 1 45 PHE n 1 46 SER n 1 47 LEU n 1 48 ASP n 1 49 LYS n 1 50 GLY n 1 51 GLN n 1 52 GLU n 1 53 ILE n 1 54 GLY n 1 55 ARG n 1 56 HIS n 1 57 SER n 1 58 SER n 1 59 PRO n 1 60 GLY n 1 61 ASP n 1 62 ALA n 1 63 MSE n 1 64 VAL n 1 65 THR n 1 66 ILE n 1 67 LEU n 1 68 SER n 1 69 GLY n 1 70 LEU n 1 71 ALA n 1 72 GLU n 1 73 ILE n 1 74 THR n 1 75 ILE n 1 76 ASP n 1 77 GLN n 1 78 GLU n 1 79 THR n 1 80 TYR n 1 81 ARG n 1 82 VAL n 1 83 ALA n 1 84 GLU n 1 85 GLY n 1 86 GLN n 1 87 THR n 1 88 ILE n 1 89 VAL n 1 90 MSE n 1 91 PRO n 1 92 ALA n 1 93 GLY n 1 94 ILE n 1 95 PRO n 1 96 HIS n 1 97 ALA n 1 98 LEU n 1 99 TYR n 1 100 ALA n 1 101 VAL n 1 102 GLU n 1 103 ALA n 1 104 PHE n 1 105 GLN n 1 106 MSE n 1 107 LEU n 1 108 LEU n 1 109 VAL n 1 110 VAL n 1 111 VAL n 1 112 LYS n 1 113 PRO n 1 114 GLU n 1 115 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene SPy1581 _entity_src_gen.gene_src_species 'Streptococcus pyogenes' _entity_src_gen.gene_src_strain 'M1 GAS' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pyogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 160490 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q99YR1_STRP1 _struct_ref.pdbx_db_accession Q99YR1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSYINNIEHAKVLDLTQEVMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQETYRVA EGQTIVMPAGIPHALYAVEAFQMLLVVVKPEA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YHF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99YR1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 112 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YHF SER A 1 ? UNP Q99YR1 ? ? 'CLONING ARTIFACT' -2 1 1 1YHF ASN A 2 ? UNP Q99YR1 ? ? 'CLONING ARTIFACT' -1 2 1 1YHF ALA A 3 ? UNP Q99YR1 ? ? 'CLONING ARTIFACT' 0 3 1 1YHF MSE A 4 ? UNP Q99YR1 MET 1 'MODIFIED RESIDUE' 1 4 1 1YHF MSE A 23 ? UNP Q99YR1 MET 20 'MODIFIED RESIDUE' 20 5 1 1YHF MSE A 29 ? UNP Q99YR1 MET 26 'MODIFIED RESIDUE' 26 6 1 1YHF MSE A 63 ? UNP Q99YR1 MET 60 'MODIFIED RESIDUE' 60 7 1 1YHF MSE A 90 ? UNP Q99YR1 MET 87 'MODIFIED RESIDUE' 87 8 1 1YHF MSE A 106 ? UNP Q99YR1 MET 103 'MODIFIED RESIDUE' 103 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YHF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 45.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details '30% PEG 3000, 0.1 M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 4.50' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2004-12-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength 0.97946 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YHF _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 8535 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.137 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 23.400 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 94.8 _reflns_shell.Rmerge_I_obs 0.746 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.620 _reflns_shell.pdbx_redundancy 12.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YHF _refine.ls_number_reflns_obs 8492 _refine.ls_number_reflns_all 8492 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.90 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 843 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 31.75 _refine.aniso_B[1][1] 1.42000 _refine.aniso_B[2][2] 1.42000 _refine.aniso_B[3][3] -2.85000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method ? _refine.details ;ALL DATA WERE USED IN FINAL ROUND OF REFINEMENT. R-FACTOR-ALL CORRESPONDS TO DEPOSITED FILE. R- FACTORS, R-WORK AND R-FREE, ARE TAKEN FROM SECOND TO LAST ROUND OF REFINEMENT WHICH USED TEST DATA SET. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.179 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.087 _refine.overall_SU_B 5.982 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 878 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 981 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 39.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 889 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.434 1.974 ? 1206 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.634 5.000 ? 113 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.072 25.897 ? 39 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.349 15.000 ? 161 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.461 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 146 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 656 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.226 0.200 ? 345 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.304 0.200 ? 597 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.156 0.200 ? 83 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.217 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.159 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.945 1.500 ? 588 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.229 2.000 ? 920 'X-RAY DIFFRACTION' ? r_scbond_it 2.410 3.000 ? 334 'X-RAY DIFFRACTION' ? r_scangle_it 3.914 4.500 ? 286 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 554 _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs 95.35 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YHF _struct.title 'Crystal Structure of Conserved SPY1581 Protein of Unknown Function from Streptococcus pyogenes' _struct.pdbx_descriptor 'hypothetical protein SPy1581' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;structural genomics, conserved hypothetical protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; _struct_keywords.entry_id 1YHF _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 17 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 22 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 19 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A VAL 22 C ? ? ? 1_555 A MSE 23 N ? ? A VAL 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 23 C ? ? ? 1_555 A ILE 24 N ? ? A MSE 20 A ILE 21 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A GLN 28 C ? ? ? 1_555 A MSE 29 N ? ? A GLN 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 29 C ? ? ? 1_555 A LEU 30 N ? ? A MSE 26 A LEU 27 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A ALA 62 C ? ? ? 1_555 A MSE 63 N ? ? A ALA 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? A MSE 63 C ? ? ? 1_555 A VAL 64 N ? ? A MSE 60 A VAL 61 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A VAL 89 C ? ? ? 1_555 A MSE 90 N ? ? A VAL 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 90 C ? ? ? 1_555 A PRO 91 N ? ? A MSE 87 A PRO 88 1_555 ? ? ? ? ? ? ? 1.347 ? covale11 covale ? ? A GLN 105 C ? ? ? 1_555 A MSE 106 N ? ? A GLN 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.337 ? covale12 covale ? ? A MSE 106 C ? ? ? 1_555 A LEU 107 N ? ? A MSE 103 A LEU 104 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 114 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 111 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ALA _struct_mon_prot_cis.pdbx_label_seq_id_2 115 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ALA _struct_mon_prot_cis.pdbx_auth_seq_id_2 112 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 29 ? ARG A 37 ? MSE A 26 ARG A 34 A 2 LEU A 40 ? LEU A 47 ? LEU A 37 LEU A 44 A 3 PHE A 104 ? VAL A 111 ? PHE A 101 VAL A 108 A 4 ASP A 61 ? SER A 68 ? ASP A 58 SER A 65 A 5 THR A 87 ? MSE A 90 ? THR A 84 MSE A 87 B 1 GLU A 52 ? HIS A 56 ? GLU A 49 HIS A 53 B 2 HIS A 96 ? ALA A 100 ? HIS A 93 ALA A 97 B 3 LEU A 70 ? ILE A 75 ? LEU A 67 ILE A 72 B 4 GLU A 78 ? ALA A 83 ? GLU A 75 ALA A 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 32 ? N ARG A 29 O VAL A 44 ? O VAL A 41 A 2 3 N GLY A 41 ? N GLY A 38 O VAL A 110 ? O VAL A 107 A 3 4 O VAL A 109 ? O VAL A 106 N MSE A 63 ? N MSE A 60 A 4 5 N VAL A 64 ? N VAL A 61 O ILE A 88 ? O ILE A 85 B 1 2 N HIS A 56 ? N HIS A 53 O HIS A 96 ? O HIS A 93 B 2 3 O TYR A 99 ? O TYR A 96 N GLU A 72 ? N GLU A 69 B 3 4 N ILE A 73 ? N ILE A 70 O TYR A 80 ? O TYR A 77 # _atom_sites.entry_id 1YHF _atom_sites.fract_transf_matrix[1][1] 0.0251 _atom_sites.fract_transf_matrix[1][2] 0.0000 _atom_sites.fract_transf_matrix[1][3] 0.0000 _atom_sites.fract_transf_matrix[2][1] 0.0000 _atom_sites.fract_transf_matrix[2][2] 0.0251 _atom_sites.fract_transf_matrix[2][3] 0.0000 _atom_sites.fract_transf_matrix[3][1] 0.0000 _atom_sites.fract_transf_matrix[3][2] 0.0000 _atom_sites.fract_transf_matrix[3][3] 0.0069 _atom_sites.fract_transf_vector[1] 0.0000 _atom_sites.fract_transf_vector[2] 0.0000 _atom_sites.fract_transf_vector[3] 0.0000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 TYR 6 3 3 TYR TYR A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 ASN 8 5 5 ASN ASN A . n A 1 9 ASN 9 6 6 ASN ASN A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 HIS 12 9 9 HIS HIS A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 LYS 14 11 11 LYS LYS A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 THR 19 16 16 THR THR A . n A 1 20 GLN 20 17 17 GLN GLN A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 VAL 22 19 19 VAL VAL A . n A 1 23 MSE 23 20 20 MSE MSE A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 GLN 26 23 23 GLN GLN A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 GLN 28 25 25 GLN GLN A . n A 1 29 MSE 29 26 26 MSE MSE A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 SER 31 28 28 SER SER A . n A 1 32 ARG 32 29 29 ARG ARG A . n A 1 33 THR 33 30 30 THR THR A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 GLN 36 33 33 GLN GLN A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 GLN 38 35 35 GLN GLN A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 GLY 41 38 38 GLY GLY A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 VAL 44 41 41 VAL VAL A . n A 1 45 PHE 45 42 42 PHE PHE A . n A 1 46 SER 46 43 43 SER SER A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 ASP 48 45 45 ASP ASP A . n A 1 49 LYS 49 46 46 LYS LYS A . n A 1 50 GLY 50 47 47 GLY GLY A . n A 1 51 GLN 51 48 48 GLN GLN A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 HIS 56 53 53 HIS HIS A . n A 1 57 SER 57 54 54 SER SER A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 PRO 59 56 56 PRO PRO A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 ASP 61 58 58 ASP ASP A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 MSE 63 60 60 MSE MSE A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 THR 65 62 62 THR THR A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 SER 68 65 65 SER SER A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 THR 74 71 71 THR THR A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 GLN 77 74 74 GLN GLN A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 TYR 80 77 77 TYR TYR A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 GLN 86 83 83 GLN GLN A . n A 1 87 THR 87 84 84 THR THR A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 MSE 90 87 87 MSE MSE A . n A 1 91 PRO 91 88 88 PRO PRO A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 GLY 93 90 90 GLY GLY A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 PRO 95 92 92 PRO PRO A . n A 1 96 HIS 96 93 93 HIS HIS A . n A 1 97 ALA 97 94 94 ALA ALA A . n A 1 98 LEU 98 95 95 LEU LEU A . n A 1 99 TYR 99 96 96 TYR TYR A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 PHE 104 101 101 PHE PHE A . n A 1 105 GLN 105 102 102 GLN GLN A . n A 1 106 MSE 106 103 103 MSE MSE A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 LYS 112 109 109 LYS LYS A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 GLU 114 111 111 GLU GLU A . n A 1 115 ALA 115 112 112 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 20 ? MET SELENOMETHIONINE 3 A MSE 29 A MSE 26 ? MET SELENOMETHIONINE 4 A MSE 63 A MSE 60 ? MET SELENOMETHIONINE 5 A MSE 90 A MSE 87 ? MET SELENOMETHIONINE 6 A MSE 106 A MSE 103 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3380 ? 2 MORE -25 ? 2 'SSA (A^2)' 10340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0.0000000000 -1.0000000000 0.0000000000 39.8970000000 -1.0000000000 0.0000000000 0.0000000000 39.8970000000 0.0000000000 0.0000000000 -1.0000000000 36.1895000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 214 ? B HOH . 2 1 A HOH 215 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.7025 _pdbx_refine_tls.origin_y 14.9165 _pdbx_refine_tls.origin_z 27.3086 _pdbx_refine_tls.T[1][1] -0.0596 _pdbx_refine_tls.T[2][2] -0.0087 _pdbx_refine_tls.T[3][3] -0.0357 _pdbx_refine_tls.T[1][2] 0.0244 _pdbx_refine_tls.T[1][3] 0.0050 _pdbx_refine_tls.T[2][3] 0.0038 _pdbx_refine_tls.L[1][1] 0.6212 _pdbx_refine_tls.L[2][2] 1.0165 _pdbx_refine_tls.L[3][3] 1.8851 _pdbx_refine_tls.L[1][2] 0.2018 _pdbx_refine_tls.L[1][3] 0.1299 _pdbx_refine_tls.L[2][3] -0.1391 _pdbx_refine_tls.S[1][1] 0.0182 _pdbx_refine_tls.S[1][2] -0.1027 _pdbx_refine_tls.S[1][3] -0.0067 _pdbx_refine_tls.S[2][1] 0.0228 _pdbx_refine_tls.S[2][2] -0.0298 _pdbx_refine_tls.S[2][3] 0.0289 _pdbx_refine_tls.S[3][1] 0.0685 _pdbx_refine_tls.S[3][2] -0.0450 _pdbx_refine_tls.S[3][3] 0.0116 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 2 _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 115 _pdbx_refine_tls_group.end_auth_seq_id 112 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.reflns _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.delta_phi_final 100.00 5.45 502 0.718 10.4 5.45 4.23 505 0.872 7.5 4.23 3.66 506 0.864 11.5 3.66 3.31 502 0.812 9.9 3.31 3.06 504 0.795 13.4 3.06 2.87 506 0.782 11.3 2.87 2.72 503 0.751 8.6 2.72 2.60 504 0.746 8.9 2.60 2.49 509 0.772 5.8 2.49 2.40 503 0.773 5.9 2.40 2.32 509 0.758 5.3 2.32 2.25 512 0.798 3.4 2.25 2.19 505 0.777 3.4 2.19 2.13 503 0.709 3.6 2.13 2.08 501 0.741 3.2 2.08 2.04 507 0.783 2.0 2.04 1.95 974 0.655 2.2 # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 MLPHARE . ? program 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CG2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 62 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 213 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 73 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 55.39 _pdbx_validate_torsion.psi -106.91 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id -2 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 113 1 HOH HOH A . B 2 HOH 2 114 2 HOH HOH A . B 2 HOH 3 115 3 HOH HOH A . B 2 HOH 4 116 4 HOH HOH A . B 2 HOH 5 117 5 HOH HOH A . B 2 HOH 6 118 6 HOH HOH A . B 2 HOH 7 119 7 HOH HOH A . B 2 HOH 8 120 8 HOH HOH A . B 2 HOH 9 121 9 HOH HOH A . B 2 HOH 10 122 10 HOH HOH A . B 2 HOH 11 123 11 HOH HOH A . B 2 HOH 12 124 12 HOH HOH A . B 2 HOH 13 125 13 HOH HOH A . B 2 HOH 14 126 14 HOH HOH A . B 2 HOH 15 127 15 HOH HOH A . B 2 HOH 16 128 16 HOH HOH A . B 2 HOH 17 129 17 HOH HOH A . B 2 HOH 18 130 18 HOH HOH A . B 2 HOH 19 131 19 HOH HOH A . B 2 HOH 20 132 20 HOH HOH A . B 2 HOH 21 133 21 HOH HOH A . B 2 HOH 22 134 22 HOH HOH A . B 2 HOH 23 135 23 HOH HOH A . B 2 HOH 24 136 24 HOH HOH A . B 2 HOH 25 137 25 HOH HOH A . B 2 HOH 26 138 26 HOH HOH A . B 2 HOH 27 139 27 HOH HOH A . B 2 HOH 28 140 28 HOH HOH A . B 2 HOH 29 141 29 HOH HOH A . B 2 HOH 30 142 30 HOH HOH A . B 2 HOH 31 143 31 HOH HOH A . B 2 HOH 32 144 32 HOH HOH A . B 2 HOH 33 145 33 HOH HOH A . B 2 HOH 34 146 34 HOH HOH A . B 2 HOH 35 147 35 HOH HOH A . B 2 HOH 36 148 36 HOH HOH A . B 2 HOH 37 149 37 HOH HOH A . B 2 HOH 38 150 38 HOH HOH A . B 2 HOH 39 151 39 HOH HOH A . B 2 HOH 40 152 40 HOH HOH A . B 2 HOH 41 153 41 HOH HOH A . B 2 HOH 42 154 42 HOH HOH A . B 2 HOH 43 155 43 HOH HOH A . B 2 HOH 44 156 44 HOH HOH A . B 2 HOH 45 157 45 HOH HOH A . B 2 HOH 46 158 46 HOH HOH A . B 2 HOH 47 159 47 HOH HOH A . B 2 HOH 48 160 48 HOH HOH A . B 2 HOH 49 161 49 HOH HOH A . B 2 HOH 50 162 50 HOH HOH A . B 2 HOH 51 163 51 HOH HOH A . B 2 HOH 52 164 52 HOH HOH A . B 2 HOH 53 165 53 HOH HOH A . B 2 HOH 54 166 54 HOH HOH A . B 2 HOH 55 167 55 HOH HOH A . B 2 HOH 56 168 56 HOH HOH A . B 2 HOH 57 169 57 HOH HOH A . B 2 HOH 58 170 58 HOH HOH A . B 2 HOH 59 171 59 HOH HOH A . B 2 HOH 60 172 60 HOH HOH A . B 2 HOH 61 173 61 HOH HOH A . B 2 HOH 62 174 62 HOH HOH A . B 2 HOH 63 175 63 HOH HOH A . B 2 HOH 64 176 64 HOH HOH A . B 2 HOH 65 177 65 HOH HOH A . B 2 HOH 66 178 66 HOH HOH A . B 2 HOH 67 179 67 HOH HOH A . B 2 HOH 68 180 68 HOH HOH A . B 2 HOH 69 181 69 HOH HOH A . B 2 HOH 70 182 70 HOH HOH A . B 2 HOH 71 183 71 HOH HOH A . B 2 HOH 72 184 72 HOH HOH A . B 2 HOH 73 185 73 HOH HOH A . B 2 HOH 74 186 74 HOH HOH A . B 2 HOH 75 187 75 HOH HOH A . B 2 HOH 76 188 76 HOH HOH A . B 2 HOH 77 189 77 HOH HOH A . B 2 HOH 78 190 78 HOH HOH A . B 2 HOH 79 191 79 HOH HOH A . B 2 HOH 80 192 80 HOH HOH A . B 2 HOH 81 193 81 HOH HOH A . B 2 HOH 82 194 82 HOH HOH A . B 2 HOH 83 195 83 HOH HOH A . B 2 HOH 84 196 84 HOH HOH A . B 2 HOH 85 197 85 HOH HOH A . B 2 HOH 86 198 86 HOH HOH A . B 2 HOH 87 199 87 HOH HOH A . B 2 HOH 88 200 88 HOH HOH A . B 2 HOH 89 201 89 HOH HOH A . B 2 HOH 90 202 90 HOH HOH A . B 2 HOH 91 203 91 HOH HOH A . B 2 HOH 92 204 92 HOH HOH A . B 2 HOH 93 205 93 HOH HOH A . B 2 HOH 94 206 94 HOH HOH A . B 2 HOH 95 207 95 HOH HOH A . B 2 HOH 96 208 96 HOH HOH A . B 2 HOH 97 209 97 HOH HOH A . B 2 HOH 98 210 98 HOH HOH A . B 2 HOH 99 211 99 HOH HOH A . B 2 HOH 100 212 100 HOH HOH A . B 2 HOH 101 213 101 HOH HOH A . B 2 HOH 102 214 102 HOH HOH A . B 2 HOH 103 215 103 HOH HOH A . #