HEADER HYDROLASE 10-JAN-05 1YHT TITLE CRYSTAL STRUCTURE ANALYSIS OF DISPERSIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSPB; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGGREGATIBACTER ACTINOMYCETEMCOMITANS; SOURCE 3 ORGANISM_TAXID: 714; SOURCE 4 STRAIN: CU1000; SOURCE 5 GENE: DSPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS BETA BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.RAMASUBBU,L.M.THOMAS,C.RAGUNATH,J.B.KAPLAN REVDAT 4 14-FEB-24 1YHT 1 REMARK SEQADV REVDAT 3 13-JUL-11 1YHT 1 VERSN REVDAT 2 24-FEB-09 1YHT 1 VERSN REVDAT 1 10-JAN-06 1YHT 0 JRNL AUTH N.RAMASUBBU,L.M.THOMAS,C.RAGUNATH,J.B.KAPLAN JRNL TITL STRUCTURAL ANALYSIS OF DISPERSIN B, A BIOFILM-RELEASING JRNL TITL 2 GLYCOSIDE HYDROLASE FROM THE PERIODONTOPATHOGEN JRNL TITL 3 ACTINOBACILLUS ACTINOMYCETEMCOMITANS. JRNL REF J.MOL.BIOL. V. 349 475 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15878175 JRNL DOI 10.1016/J.JMB.2005.03.082 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.B.KAPLAN,C.RAGUNATH,N.RAMASUBBU,D.H.FINE REMARK 1 TITL DETACHMENT OF ACTINOBACILLUS ACTINOMYCETEMCOMITANS BIOFILM REMARK 1 TITL 2 CELLS BY AN ENDOGENOUS BETA-HEXOSAMINIDASE ACTIVITY REMARK 1 REF J.BACTERIOL. V. 185 4693 2003 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 12896987 REMARK 1 DOI 10.1128/JB.185.16.4693-4698.2003 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.B.KAPLAN,C.RAGUNATH,K.VELLIYAGOUNDER,D.H.FINE,N.RAMASUBBU REMARK 1 TITL ENZYMATIC DETACHMENT OF STAPHYLOCOCCUS EPIDERMIDIS BIOFILMS REMARK 1 REF ANTIMICROB.AGENTS CHEMOTHER. 2633 2004 REMARK 1 REFN ESSN 1098-6596 REMARK 1 PMID 15215120 REMARK 1 DOI 10.1128/AAC.48.7.2633-2636.2004 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.B.KAPLAN,K.VELLIYAGOUNDER,C.RAGUNATH,H.RHODE,D.MACK, REMARK 1 AUTH 2 J.K.KNOBLOCH,N.RAMASUBBU REMARK 1 TITL GENES INVOLVED IN THE SYNTHESIS AND DEGRADATION OF MATRIX REMARK 1 TITL 2 POLYSACCHARIDE IN ACTINOBACILLUS ACTINOMYCETEMCOMITANS AND REMARK 1 TITL 3 ACTINOBACILLUS PLEUROPNEUMONIAE BIOFILMS. REMARK 1 REF J.BACTERIOL. V. 186 8213 2004 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 15576769 REMARK 1 DOI 10.1128/JB.186.24.8213-8220.2004 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1556 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.1490 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2835 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2489 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3829 ; 1.623 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5820 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;38.845 ;25.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;15.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3157 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 569 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 605 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2482 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1365 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1447 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2229 ; 1.585 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 703 ; 0.244 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2749 ; 1.555 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 2.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 3.635 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE ELECTRON DENSITY FOR RESIDUES TYR187, SER188, VAL189, REMARK 3 GLU190 AND SER191 ARE NOT WELL RESOLVED. REMARK 4 REMARK 4 1YHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : SSRL; NULL REMARK 200 BEAMLINE : BL9-2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.979; NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10000, AMMONIUM ACETATE, BISTRIS, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.88700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.88700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.51150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.06450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.51150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.06450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.88700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.51150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.06450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.88700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.51150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.06450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 CYS A 2 REMARK 465 CYS A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ILE A 9 REMARK 465 TYR A 10 REMARK 465 PRO A 11 REMARK 465 GLN A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 SER A 15 REMARK 465 ASP A 360 REMARK 465 GLU A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 188 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 73 CB ASN A 73 CG 0.150 REMARK 500 GLU A 332 CB GLU A 332 CG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 22 CG - SD - CE ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 332 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 121 24.49 -142.88 REMARK 500 ASN A 273 106.66 -17.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 751 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 752 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HP4 RELATED DB: PDB REMARK 900 SAME FAMILY 20 ENZYME REMARK 900 RELATED ID: 1O7A RELATED DB: PDB REMARK 900 SAME FAMILY 20 ENZYME REMARK 900 RELATED ID: 1NOW RELATED DB: PDB REMARK 900 SAME FAMILY 20 ENZYME REMARK 900 RELATED ID: 1QBB RELATED DB: PDB REMARK 900 SAME FAMILY 20 ENZYME DBREF 1YHT A 1 361 GB 30420960 AAP31025 1 361 SEQADV 1YHT HIS A 362 GB 30420960 EXPRESSION TAG SEQADV 1YHT HIS A 363 GB 30420960 EXPRESSION TAG SEQADV 1YHT HIS A 364 GB 30420960 EXPRESSION TAG SEQADV 1YHT HIS A 365 GB 30420960 EXPRESSION TAG SEQADV 1YHT HIS A 366 GB 30420960 EXPRESSION TAG SEQADV 1YHT HIS A 367 GB 30420960 EXPRESSION TAG SEQRES 1 A 367 ASN CYS CYS VAL LYS GLY ASN SER ILE TYR PRO GLN LYS SEQRES 2 A 367 THR SER THR LYS GLN THR GLY LEU MET LEU ASP ILE ALA SEQRES 3 A 367 ARG HIS PHE TYR SER PRO GLU VAL ILE LYS SER PHE ILE SEQRES 4 A 367 ASP THR ILE SER LEU SER GLY GLY ASN PHE LEU HIS LEU SEQRES 5 A 367 HIS PHE SER ASP HIS GLU ASN TYR ALA ILE GLU SER HIS SEQRES 6 A 367 LEU LEU ASN GLN ARG ALA GLU ASN ALA VAL GLN GLY LYS SEQRES 7 A 367 ASP GLY ILE TYR ILE ASN PRO TYR THR GLY LYS PRO PHE SEQRES 8 A 367 LEU SER TYR ARG GLN LEU ASP ASP ILE LYS ALA TYR ALA SEQRES 9 A 367 LYS ALA LYS GLY ILE GLU LEU ILE PRO GLU LEU ASP SER SEQRES 10 A 367 PRO ASN HIS MET THR ALA ILE PHE LYS LEU VAL GLN LYS SEQRES 11 A 367 ASP ARG GLY VAL LYS TYR LEU GLN GLY LEU LYS SER ARG SEQRES 12 A 367 GLN VAL ASP ASP GLU ILE ASP ILE THR ASN ALA ASP SER SEQRES 13 A 367 ILE THR PHE MET GLN SER LEU MET SER GLU VAL ILE ASP SEQRES 14 A 367 ILE PHE GLY ASP THR SER GLN HIS PHE HIS ILE GLY GLY SEQRES 15 A 367 ASP GLU PHE GLY TYR SER VAL GLU SER ASN HIS GLU PHE SEQRES 16 A 367 ILE THR TYR ALA ASN LYS LEU SER TYR PHE LEU GLU LYS SEQRES 17 A 367 LYS GLY LEU LYS THR ARG MET TRP ASN ASP GLY LEU ILE SEQRES 18 A 367 LYS ASN THR PHE GLU GLN ILE ASN PRO ASN ILE GLU ILE SEQRES 19 A 367 THR TYR TRP SER TYR ASP GLY ASP THR GLN ASP LYS ASN SEQRES 20 A 367 GLU ALA ALA GLU ARG ARG ASP MET ARG VAL SER LEU PRO SEQRES 21 A 367 GLU LEU LEU ALA LYS GLY PHE THR VAL LEU ASN TYR ASN SEQRES 22 A 367 SER TYR TYR LEU TYR ILE VAL PRO LYS ALA SER PRO THR SEQRES 23 A 367 PHE SER GLN ASP ALA ALA PHE ALA ALA LYS ASP VAL ILE SEQRES 24 A 367 LYS ASN TRP ASP LEU GLY VAL TRP ASP GLY ARG ASN THR SEQRES 25 A 367 LYS ASN ARG VAL GLN ASN THR HIS GLU ILE ALA GLY ALA SEQRES 26 A 367 ALA LEU SER ILE TRP GLY GLU ASP ALA LYS ALA LEU LYS SEQRES 27 A 367 ASP GLU THR ILE GLN LYS ASN THR LYS SER LEU LEU GLU SEQRES 28 A 367 ALA VAL ILE HIS LYS THR ASN GLY ASP GLU HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS HET ACY A 750 4 HET GOL A 751 6 HET GOL A 752 6 HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACY C2 H4 O2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *243(H2 O) HELIX 1 1 SER A 31 SER A 45 1 15 HELIX 2 2 ARG A 70 ALA A 74 5 5 HELIX 3 3 SER A 93 LYS A 107 1 15 HELIX 4 4 MET A 121 GLY A 133 1 13 HELIX 5 5 GLY A 133 LYS A 141 1 9 HELIX 6 6 ASN A 153 GLY A 172 1 20 HELIX 7 7 ASP A 173 SER A 175 5 3 HELIX 8 8 SER A 191 LYS A 209 1 19 HELIX 9 9 THR A 224 ILE A 228 5 5 HELIX 10 10 ASP A 245 ARG A 256 1 12 HELIX 11 11 SER A 258 LYS A 265 1 8 HELIX 12 12 ASN A 273 LEU A 277 1 5 HELIX 13 13 THR A 286 TRP A 302 1 17 HELIX 14 14 ASN A 318 ILE A 322 5 5 HELIX 15 15 LYS A 338 GLY A 359 1 22 SHEET 1 A10 TYR A 278 ILE A 279 0 SHEET 2 A10 GLY A 324 ILE A 329 1 O SER A 328 N ILE A 279 SHEET 3 A10 VAL A 269 ASN A 271 1 N ASN A 271 O GLY A 324 SHEET 4 A10 GLU A 233 TYR A 236 1 N ILE A 234 O LEU A 270 SHEET 5 A10 LYS A 212 TRP A 216 1 N THR A 213 O GLU A 233 SHEET 6 A10 HIS A 177 GLY A 181 1 N GLY A 181 O TRP A 216 SHEET 7 A10 GLU A 110 SER A 117 1 N PRO A 113 O HIS A 179 SHEET 8 A10 PHE A 49 HIS A 53 1 N LEU A 50 O GLU A 110 SHEET 9 A10 GLN A 18 ASP A 24 1 N LEU A 21 O HIS A 51 SHEET 10 A10 GLY A 324 ILE A 329 1 O LEU A 327 N MET A 22 SHEET 1 B 3 VAL A 75 GLN A 76 0 SHEET 2 B 3 TYR A 82 ILE A 83 -1 O ILE A 83 N VAL A 75 SHEET 3 B 3 PRO A 90 PHE A 91 -1 O PHE A 91 N TYR A 82 CISPEP 1 SER A 117 PRO A 118 0 0.17 SITE 1 AC1 5 ASP A 183 TRP A 216 TRP A 237 TYR A 278 SITE 2 AC1 5 GOL A 751 SITE 1 AC2 6 ARG A 27 GLU A 332 HOH A 450 HOH A 628 SITE 2 AC2 6 HOH A 629 ACY A 750 SITE 1 AC3 7 SER A 165 GLU A 166 ASP A 169 ILE A 170 SITE 2 AC3 7 LYS A 209 HOH A 406 HOH A 638 CRYST1 41.023 86.129 185.774 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005383 0.00000