data_1YI4 # _entry.id 1YI4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YI4 RCSB RCSB031537 WWPDB D_1000031537 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YHS . unspecified PDB 1YI3 . unspecified # _pdbx_database_status.entry_id 1YI4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-01-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jacobs, M.D.' 1 'Black, J.' 2 'Futer, O.' 3 'Swenson, L.' 4 'Hare, B.' 5 'Fleming, M.' 6 'Saxena, K.' 7 # _citation.id primary _citation.title 'Pim-1 ligand-bound structures reveal the mechanism of serine/threonine kinase inhibition by LY294002.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 13728 _citation.page_last 13734 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15657054 _citation.pdbx_database_id_DOI 10.1074/jbc.M413155200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jacobs, M.D.' 1 primary 'Black, J.' 2 primary 'Futer, O.' 3 primary 'Swenson, L.' 4 primary 'Hare, B.' 5 primary 'Fleming, M.' 6 primary 'Saxena, K.' 7 # _cell.entry_id 1YI4 _cell.length_a 98.269 _cell.length_b 98.269 _cell.length_c 80.386 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YI4 _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proto-oncogene serine/threonine-protein kinase Pim-1' 31673.893 1 2.7.1.37 ? ? ? 2 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN(CME)GVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS(SEP)ECQ HLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH ; _entity_poly.pdbx_seq_one_letter_code_can ;PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 GLU n 1 4 SER n 1 5 GLN n 1 6 TYR n 1 7 GLN n 1 8 VAL n 1 9 GLY n 1 10 PRO n 1 11 LEU n 1 12 LEU n 1 13 GLY n 1 14 SER n 1 15 GLY n 1 16 GLY n 1 17 PHE n 1 18 GLY n 1 19 SER n 1 20 VAL n 1 21 TYR n 1 22 SER n 1 23 GLY n 1 24 ILE n 1 25 ARG n 1 26 VAL n 1 27 SER n 1 28 ASP n 1 29 ASN n 1 30 LEU n 1 31 PRO n 1 32 VAL n 1 33 ALA n 1 34 ILE n 1 35 LYS n 1 36 HIS n 1 37 VAL n 1 38 GLU n 1 39 LYS n 1 40 ASP n 1 41 ARG n 1 42 ILE n 1 43 SER n 1 44 ASP n 1 45 TRP n 1 46 GLY n 1 47 GLU n 1 48 LEU n 1 49 PRO n 1 50 ASN n 1 51 GLY n 1 52 THR n 1 53 ARG n 1 54 VAL n 1 55 PRO n 1 56 MET n 1 57 GLU n 1 58 VAL n 1 59 VAL n 1 60 LEU n 1 61 LEU n 1 62 LYS n 1 63 LYS n 1 64 VAL n 1 65 SER n 1 66 SER n 1 67 GLY n 1 68 PHE n 1 69 SER n 1 70 GLY n 1 71 VAL n 1 72 ILE n 1 73 ARG n 1 74 LEU n 1 75 LEU n 1 76 ASP n 1 77 TRP n 1 78 PHE n 1 79 GLU n 1 80 ARG n 1 81 PRO n 1 82 ASP n 1 83 SER n 1 84 PHE n 1 85 VAL n 1 86 LEU n 1 87 ILE n 1 88 LEU n 1 89 GLU n 1 90 ARG n 1 91 PRO n 1 92 GLU n 1 93 PRO n 1 94 VAL n 1 95 GLN n 1 96 ASP n 1 97 LEU n 1 98 PHE n 1 99 ASP n 1 100 PHE n 1 101 ILE n 1 102 THR n 1 103 GLU n 1 104 ARG n 1 105 GLY n 1 106 ALA n 1 107 LEU n 1 108 GLN n 1 109 GLU n 1 110 GLU n 1 111 LEU n 1 112 ALA n 1 113 ARG n 1 114 SER n 1 115 PHE n 1 116 PHE n 1 117 TRP n 1 118 GLN n 1 119 VAL n 1 120 LEU n 1 121 GLU n 1 122 ALA n 1 123 VAL n 1 124 ARG n 1 125 HIS n 1 126 CYS n 1 127 HIS n 1 128 ASN n 1 129 CME n 1 130 GLY n 1 131 VAL n 1 132 LEU n 1 133 HIS n 1 134 ARG n 1 135 ASP n 1 136 ILE n 1 137 LYS n 1 138 ASP n 1 139 GLU n 1 140 ASN n 1 141 ILE n 1 142 LEU n 1 143 ILE n 1 144 ASP n 1 145 LEU n 1 146 ASN n 1 147 ARG n 1 148 GLY n 1 149 GLU n 1 150 LEU n 1 151 LYS n 1 152 LEU n 1 153 ILE n 1 154 ASP n 1 155 PHE n 1 156 GLY n 1 157 SER n 1 158 GLY n 1 159 ALA n 1 160 LEU n 1 161 LEU n 1 162 LYS n 1 163 ASP n 1 164 THR n 1 165 VAL n 1 166 TYR n 1 167 THR n 1 168 ASP n 1 169 PHE n 1 170 ASP n 1 171 GLY n 1 172 THR n 1 173 ARG n 1 174 VAL n 1 175 TYR n 1 176 SER n 1 177 PRO n 1 178 PRO n 1 179 GLU n 1 180 TRP n 1 181 ILE n 1 182 ARG n 1 183 TYR n 1 184 HIS n 1 185 ARG n 1 186 TYR n 1 187 HIS n 1 188 GLY n 1 189 ARG n 1 190 SER n 1 191 ALA n 1 192 ALA n 1 193 VAL n 1 194 TRP n 1 195 SER n 1 196 LEU n 1 197 GLY n 1 198 ILE n 1 199 LEU n 1 200 LEU n 1 201 TYR n 1 202 ASP n 1 203 MET n 1 204 VAL n 1 205 CYS n 1 206 GLY n 1 207 ASP n 1 208 ILE n 1 209 PRO n 1 210 PHE n 1 211 GLU n 1 212 HIS n 1 213 ASP n 1 214 GLU n 1 215 GLU n 1 216 ILE n 1 217 ILE n 1 218 ARG n 1 219 GLY n 1 220 GLN n 1 221 VAL n 1 222 PHE n 1 223 PHE n 1 224 ARG n 1 225 GLN n 1 226 ARG n 1 227 VAL n 1 228 SER n 1 229 SEP n 1 230 GLU n 1 231 CYS n 1 232 GLN n 1 233 HIS n 1 234 LEU n 1 235 ILE n 1 236 ARG n 1 237 TRP n 1 238 CYS n 1 239 LEU n 1 240 ALA n 1 241 LEU n 1 242 ARG n 1 243 PRO n 1 244 SER n 1 245 ASP n 1 246 ARG n 1 247 PRO n 1 248 THR n 1 249 PHE n 1 250 GLU n 1 251 GLU n 1 252 ILE n 1 253 GLN n 1 254 ASN n 1 255 HIS n 1 256 PRO n 1 257 TRP n 1 258 MET n 1 259 GLN n 1 260 ASP n 1 261 VAL n 1 262 LEU n 1 263 LEU n 1 264 PRO n 1 265 GLN n 1 266 GLU n 1 267 THR n 1 268 ALA n 1 269 GLU n 1 270 ILE n 1 271 HIS n 1 272 LEU n 1 273 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PIM1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21/DE3 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBEV1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PIM1_HUMAN _struct_ref.pdbx_db_accession P11309 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH ; _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YI4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 273 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11309 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 305 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 33 _struct_ref_seq.pdbx_auth_seq_align_end 305 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YI4 CME A 129 ? UNP P11309 CYS 161 'MODIFIED RESIDUE' 161 1 1 1YI4 SEP A 229 ? UNP P11309 SER 261 'MODIFIED RESIDUE' 261 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1YI4 _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.23 _exptl_crystal.density_Matthews 3.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'ammonium phosphate, citrate buffer, NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-09-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.d_resolution_low 19.56 _reflns.d_resolution_high 2.40 _reflns.number_obs 16430 _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_redundancy 5.19 _reflns.pdbx_chi_squared 0.980 _reflns.pdbx_scaling_rejects 1739 _reflns.pdbx_netI_over_sigmaI 14.7 _reflns.entry_id 1YI4 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 16430 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 2.49 _reflns_shell.d_res_high 2.40 _reflns_shell.number_unique_all 62 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs 0.361 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared 1.320 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 19.530 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 112636.891 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 93.200 _refine.ls_number_reflns_obs 16420 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.246 _refine.ls_percent_reflns_R_free 7.900 _refine.ls_number_reflns_R_free 1268 _refine.ls_R_factor_R_free_error 0.007 _refine.B_iso_mean 48.000 _refine.solvent_model_param_bsol 38.754 _refine.solvent_model_param_ksol 0.339 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 3.120 _refine.aniso_B[2][2] 3.120 _refine.aniso_B[3][3] -6.230 _refine.aniso_B[1][2] 7.230 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.entry_id 1YI4 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16420 _refine.ls_R_factor_all 0.21 _refine.ls_R_factor_obs 0.21 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.Luzzati_coordinate_error_obs 0.290 _refine_analyze.Luzzati_sigma_a_obs 0.280 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.350 _refine_analyze.Luzzati_sigma_a_free 0.330 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1YI4 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2202 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 2302 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 19.530 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.550 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 93.800 _refine_ls_shell.number_reflns_R_work 2496 _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.percent_reflns_R_free 7.200 _refine_ls_shell.number_reflns_R_free 193 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YI4 _struct.title 'Structure of Pim-1 bound to adenosine' _struct.pdbx_descriptor 'Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.1.37)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YI4 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Protein kinase, proto oncogene, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 1 ? GLN A 5 ? PRO A 33 GLN A 37 1 ? 5 HELX_P HELX_P2 2 ASP A 40 ? ILE A 42 ? ASP A 72 ILE A 74 5 ? 3 HELX_P HELX_P3 3 MET A 56 ? SER A 65 ? MET A 88 SER A 97 1 ? 10 HELX_P HELX_P4 4 LEU A 97 ? GLY A 105 ? LEU A 129 GLY A 137 1 ? 9 HELX_P HELX_P5 5 GLN A 108 ? CME A 129 ? GLN A 140 CME A 161 1 ? 22 HELX_P HELX_P6 6 LYS A 137 ? GLU A 139 ? LYS A 169 GLU A 171 5 ? 3 HELX_P HELX_P7 7 THR A 172 ? SER A 176 ? THR A 204 SER A 208 5 ? 5 HELX_P HELX_P8 8 PRO A 177 ? HIS A 184 ? PRO A 209 HIS A 216 1 ? 8 HELX_P HELX_P9 9 HIS A 187 ? GLY A 206 ? HIS A 219 GLY A 238 1 ? 20 HELX_P HELX_P10 10 HIS A 212 ? GLY A 219 ? HIS A 244 GLY A 251 1 ? 8 HELX_P HELX_P11 11 SER A 228 ? LEU A 239 ? SER A 260 LEU A 271 1 ? 12 HELX_P HELX_P12 12 ARG A 242 ? ARG A 246 ? ARG A 274 ARG A 278 5 ? 5 HELX_P HELX_P13 13 THR A 248 ? ASN A 254 ? THR A 280 ASN A 286 1 ? 7 HELX_P HELX_P14 14 HIS A 255 ? GLN A 259 ? HIS A 287 GLN A 291 5 ? 5 HELX_P HELX_P15 15 LEU A 263 ? LEU A 272 ? LEU A 295 LEU A 304 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 128 C ? ? ? 1_555 A CME 129 N ? ? A ASN 160 A CME 161 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A CME 129 C ? ? ? 1_555 A GLY 130 N ? ? A CME 161 A GLY 162 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A SER 228 C ? ? ? 1_555 A SEP 229 N ? ? A SER 260 A SEP 261 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A SEP 229 C ? ? ? 1_555 A GLU 230 N ? ? A SEP 261 A GLU 262 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 92 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 93 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 6 ? GLY A 15 ? TYR A 38 GLY A 47 A 2 GLY A 18 ? ARG A 25 ? GLY A 50 ARG A 57 A 3 PRO A 31 ? GLU A 38 ? PRO A 63 GLU A 70 A 4 SER A 83 ? GLU A 89 ? SER A 115 GLU A 121 A 5 LEU A 74 ? ARG A 80 ? LEU A 106 ARG A 112 B 1 TRP A 45 ? GLY A 46 ? TRP A 77 GLY A 78 B 2 VAL A 54 ? PRO A 55 ? VAL A 86 PRO A 87 C 1 VAL A 94 ? ASP A 96 ? VAL A 126 ASP A 128 C 2 ILE A 141 ? ASP A 144 ? ILE A 173 ASP A 176 C 3 GLU A 149 ? LEU A 152 ? GLU A 181 LEU A 184 D 1 VAL A 131 ? LEU A 132 ? VAL A 163 LEU A 164 D 2 ALA A 159 ? LEU A 160 ? ALA A 191 LEU A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PRO A 10 ? N PRO A 42 O SER A 22 ? O SER A 54 A 2 3 N TYR A 21 ? N TYR A 53 O ILE A 34 ? O ILE A 66 A 3 4 N ALA A 33 ? N ALA A 65 O LEU A 88 ? O LEU A 120 A 4 5 O SER A 83 ? O SER A 115 N ARG A 80 ? N ARG A 112 B 1 2 N GLY A 46 ? N GLY A 78 O VAL A 54 ? O VAL A 86 C 1 2 N GLN A 95 ? N GLN A 127 O ILE A 143 ? O ILE A 175 C 2 3 N ASP A 144 ? N ASP A 176 O GLU A 149 ? O GLU A 181 D 1 2 N LEU A 132 ? N LEU A 164 O ALA A 159 ? O ALA A 191 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE ADN A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PHE A 17 ? PHE A 49 . ? 1_555 ? 2 AC1 8 ILE A 72 ? ILE A 104 . ? 1_555 ? 3 AC1 8 GLU A 89 ? GLU A 121 . ? 1_555 ? 4 AC1 8 ASP A 96 ? ASP A 128 . ? 1_555 ? 5 AC1 8 LEU A 142 ? LEU A 174 . ? 1_555 ? 6 AC1 8 HOH C . ? HOH A 373 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 386 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 387 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YI4 _database_PDB_matrix.origx[1][1] 1.0000 _database_PDB_matrix.origx[1][2] 0.0000 _database_PDB_matrix.origx[1][3] 0.0000 _database_PDB_matrix.origx[2][1] 0.0000 _database_PDB_matrix.origx[2][2] 1.0000 _database_PDB_matrix.origx[2][3] 0.0000 _database_PDB_matrix.origx[3][1] 0.0000 _database_PDB_matrix.origx[3][2] 0.0000 _database_PDB_matrix.origx[3][3] 1.0000 _database_PDB_matrix.origx_vector[1] 0.0000 _database_PDB_matrix.origx_vector[2] 0.0000 _database_PDB_matrix.origx_vector[3] 0.0000 # _atom_sites.entry_id 1YI4 _atom_sites.fract_transf_matrix[1][1] 0.010176 _atom_sites.fract_transf_matrix[1][2] 0.005875 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011750 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012440 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 33 33 PRO PRO A . n A 1 2 LEU 2 34 34 LEU LEU A . n A 1 3 GLU 3 35 35 GLU GLU A . n A 1 4 SER 4 36 36 SER SER A . n A 1 5 GLN 5 37 37 GLN GLN A . n A 1 6 TYR 6 38 38 TYR TYR A . n A 1 7 GLN 7 39 39 GLN GLN A . n A 1 8 VAL 8 40 40 VAL VAL A . n A 1 9 GLY 9 41 41 GLY GLY A . n A 1 10 PRO 10 42 42 PRO PRO A . n A 1 11 LEU 11 43 43 LEU LEU A . n A 1 12 LEU 12 44 44 LEU LEU A . n A 1 13 GLY 13 45 45 GLY GLY A . n A 1 14 SER 14 46 46 SER SER A . n A 1 15 GLY 15 47 47 GLY GLY A . n A 1 16 GLY 16 48 48 GLY GLY A . n A 1 17 PHE 17 49 49 PHE PHE A . n A 1 18 GLY 18 50 50 GLY GLY A . n A 1 19 SER 19 51 51 SER SER A . n A 1 20 VAL 20 52 52 VAL VAL A . n A 1 21 TYR 21 53 53 TYR TYR A . n A 1 22 SER 22 54 54 SER SER A . n A 1 23 GLY 23 55 55 GLY GLY A . n A 1 24 ILE 24 56 56 ILE ILE A . n A 1 25 ARG 25 57 57 ARG ARG A . n A 1 26 VAL 26 58 58 VAL VAL A . n A 1 27 SER 27 59 59 SER SER A . n A 1 28 ASP 28 60 60 ASP ASP A . n A 1 29 ASN 29 61 61 ASN ASN A . n A 1 30 LEU 30 62 62 LEU LEU A . n A 1 31 PRO 31 63 63 PRO PRO A . n A 1 32 VAL 32 64 64 VAL VAL A . n A 1 33 ALA 33 65 65 ALA ALA A . n A 1 34 ILE 34 66 66 ILE ILE A . n A 1 35 LYS 35 67 67 LYS LYS A . n A 1 36 HIS 36 68 68 HIS HIS A . n A 1 37 VAL 37 69 69 VAL VAL A . n A 1 38 GLU 38 70 70 GLU GLU A . n A 1 39 LYS 39 71 71 LYS LYS A . n A 1 40 ASP 40 72 72 ASP ASP A . n A 1 41 ARG 41 73 73 ARG ARG A . n A 1 42 ILE 42 74 74 ILE ILE A . n A 1 43 SER 43 75 75 SER SER A . n A 1 44 ASP 44 76 76 ASP ASP A . n A 1 45 TRP 45 77 77 TRP TRP A . n A 1 46 GLY 46 78 78 GLY GLY A . n A 1 47 GLU 47 79 79 GLU GLU A . n A 1 48 LEU 48 80 ? ? ? A . n A 1 49 PRO 49 81 ? ? ? A . n A 1 50 ASN 50 82 ? ? ? A . n A 1 51 GLY 51 83 ? ? ? A . n A 1 52 THR 52 84 84 THR THR A . n A 1 53 ARG 53 85 85 ARG ARG A . n A 1 54 VAL 54 86 86 VAL VAL A . n A 1 55 PRO 55 87 87 PRO PRO A . n A 1 56 MET 56 88 88 MET MET A . n A 1 57 GLU 57 89 89 GLU GLU A . n A 1 58 VAL 58 90 90 VAL VAL A . n A 1 59 VAL 59 91 91 VAL VAL A . n A 1 60 LEU 60 92 92 LEU LEU A . n A 1 61 LEU 61 93 93 LEU LEU A . n A 1 62 LYS 62 94 94 LYS LYS A . n A 1 63 LYS 63 95 95 LYS LYS A . n A 1 64 VAL 64 96 96 VAL VAL A . n A 1 65 SER 65 97 97 SER SER A . n A 1 66 SER 66 98 98 SER SER A . n A 1 67 GLY 67 99 99 GLY GLY A . n A 1 68 PHE 68 100 100 PHE PHE A . n A 1 69 SER 69 101 101 SER SER A . n A 1 70 GLY 70 102 102 GLY GLY A . n A 1 71 VAL 71 103 103 VAL VAL A . n A 1 72 ILE 72 104 104 ILE ILE A . n A 1 73 ARG 73 105 105 ARG ARG A . n A 1 74 LEU 74 106 106 LEU LEU A . n A 1 75 LEU 75 107 107 LEU LEU A . n A 1 76 ASP 76 108 108 ASP ASP A . n A 1 77 TRP 77 109 109 TRP TRP A . n A 1 78 PHE 78 110 110 PHE PHE A . n A 1 79 GLU 79 111 111 GLU GLU A . n A 1 80 ARG 80 112 112 ARG ARG A . n A 1 81 PRO 81 113 113 PRO PRO A . n A 1 82 ASP 82 114 114 ASP ASP A . n A 1 83 SER 83 115 115 SER SER A . n A 1 84 PHE 84 116 116 PHE PHE A . n A 1 85 VAL 85 117 117 VAL VAL A . n A 1 86 LEU 86 118 118 LEU LEU A . n A 1 87 ILE 87 119 119 ILE ILE A . n A 1 88 LEU 88 120 120 LEU LEU A . n A 1 89 GLU 89 121 121 GLU GLU A . n A 1 90 ARG 90 122 122 ARG ARG A . n A 1 91 PRO 91 123 123 PRO PRO A . n A 1 92 GLU 92 124 124 GLU GLU A . n A 1 93 PRO 93 125 125 PRO PRO A . n A 1 94 VAL 94 126 126 VAL VAL A . n A 1 95 GLN 95 127 127 GLN GLN A . n A 1 96 ASP 96 128 128 ASP ASP A . n A 1 97 LEU 97 129 129 LEU LEU A . n A 1 98 PHE 98 130 130 PHE PHE A . n A 1 99 ASP 99 131 131 ASP ASP A . n A 1 100 PHE 100 132 132 PHE PHE A . n A 1 101 ILE 101 133 133 ILE ILE A . n A 1 102 THR 102 134 134 THR THR A . n A 1 103 GLU 103 135 135 GLU GLU A . n A 1 104 ARG 104 136 136 ARG ARG A . n A 1 105 GLY 105 137 137 GLY GLY A . n A 1 106 ALA 106 138 138 ALA ALA A . n A 1 107 LEU 107 139 139 LEU LEU A . n A 1 108 GLN 108 140 140 GLN GLN A . n A 1 109 GLU 109 141 141 GLU GLU A . n A 1 110 GLU 110 142 142 GLU GLU A . n A 1 111 LEU 111 143 143 LEU LEU A . n A 1 112 ALA 112 144 144 ALA ALA A . n A 1 113 ARG 113 145 145 ARG ARG A . n A 1 114 SER 114 146 146 SER SER A . n A 1 115 PHE 115 147 147 PHE PHE A . n A 1 116 PHE 116 148 148 PHE PHE A . n A 1 117 TRP 117 149 149 TRP TRP A . n A 1 118 GLN 118 150 150 GLN GLN A . n A 1 119 VAL 119 151 151 VAL VAL A . n A 1 120 LEU 120 152 152 LEU LEU A . n A 1 121 GLU 121 153 153 GLU GLU A . n A 1 122 ALA 122 154 154 ALA ALA A . n A 1 123 VAL 123 155 155 VAL VAL A . n A 1 124 ARG 124 156 156 ARG ARG A . n A 1 125 HIS 125 157 157 HIS HIS A . n A 1 126 CYS 126 158 158 CYS CYS A . n A 1 127 HIS 127 159 159 HIS HIS A . n A 1 128 ASN 128 160 160 ASN ASN A . n A 1 129 CME 129 161 161 CME CME A . n A 1 130 GLY 130 162 162 GLY GLY A . n A 1 131 VAL 131 163 163 VAL VAL A . n A 1 132 LEU 132 164 164 LEU LEU A . n A 1 133 HIS 133 165 165 HIS HIS A . n A 1 134 ARG 134 166 166 ARG ARG A . n A 1 135 ASP 135 167 167 ASP ASP A . n A 1 136 ILE 136 168 168 ILE ILE A . n A 1 137 LYS 137 169 169 LYS LYS A . n A 1 138 ASP 138 170 170 ASP ASP A . n A 1 139 GLU 139 171 171 GLU GLU A . n A 1 140 ASN 140 172 172 ASN ASN A . n A 1 141 ILE 141 173 173 ILE ILE A . n A 1 142 LEU 142 174 174 LEU LEU A . n A 1 143 ILE 143 175 175 ILE ILE A . n A 1 144 ASP 144 176 176 ASP ASP A . n A 1 145 LEU 145 177 177 LEU LEU A . n A 1 146 ASN 146 178 178 ASN ASN A . n A 1 147 ARG 147 179 179 ARG ARG A . n A 1 148 GLY 148 180 180 GLY GLY A . n A 1 149 GLU 149 181 181 GLU GLU A . n A 1 150 LEU 150 182 182 LEU LEU A . n A 1 151 LYS 151 183 183 LYS LYS A . n A 1 152 LEU 152 184 184 LEU LEU A . n A 1 153 ILE 153 185 185 ILE ILE A . n A 1 154 ASP 154 186 186 ASP ASP A . n A 1 155 PHE 155 187 187 PHE PHE A . n A 1 156 GLY 156 188 188 GLY GLY A . n A 1 157 SER 157 189 189 SER SER A . n A 1 158 GLY 158 190 190 GLY GLY A . n A 1 159 ALA 159 191 191 ALA ALA A . n A 1 160 LEU 160 192 192 LEU LEU A . n A 1 161 LEU 161 193 193 LEU LEU A . n A 1 162 LYS 162 194 194 LYS LYS A . n A 1 163 ASP 163 195 195 ASP ASP A . n A 1 164 THR 164 196 196 THR THR A . n A 1 165 VAL 165 197 197 VAL VAL A . n A 1 166 TYR 166 198 198 TYR TYR A . n A 1 167 THR 167 199 199 THR THR A . n A 1 168 ASP 168 200 200 ASP ASP A . n A 1 169 PHE 169 201 201 PHE PHE A . n A 1 170 ASP 170 202 202 ASP ASP A . n A 1 171 GLY 171 203 203 GLY GLY A . n A 1 172 THR 172 204 204 THR THR A . n A 1 173 ARG 173 205 205 ARG ARG A . n A 1 174 VAL 174 206 206 VAL VAL A . n A 1 175 TYR 175 207 207 TYR TYR A . n A 1 176 SER 176 208 208 SER SER A . n A 1 177 PRO 177 209 209 PRO PRO A . n A 1 178 PRO 178 210 210 PRO PRO A . n A 1 179 GLU 179 211 211 GLU GLU A . n A 1 180 TRP 180 212 212 TRP TRP A . n A 1 181 ILE 181 213 213 ILE ILE A . n A 1 182 ARG 182 214 214 ARG ARG A . n A 1 183 TYR 183 215 215 TYR TYR A . n A 1 184 HIS 184 216 216 HIS HIS A . n A 1 185 ARG 185 217 217 ARG ARG A . n A 1 186 TYR 186 218 218 TYR TYR A . n A 1 187 HIS 187 219 219 HIS HIS A . n A 1 188 GLY 188 220 220 GLY GLY A . n A 1 189 ARG 189 221 221 ARG ARG A . n A 1 190 SER 190 222 222 SER SER A . n A 1 191 ALA 191 223 223 ALA ALA A . n A 1 192 ALA 192 224 224 ALA ALA A . n A 1 193 VAL 193 225 225 VAL VAL A . n A 1 194 TRP 194 226 226 TRP TRP A . n A 1 195 SER 195 227 227 SER SER A . n A 1 196 LEU 196 228 228 LEU LEU A . n A 1 197 GLY 197 229 229 GLY GLY A . n A 1 198 ILE 198 230 230 ILE ILE A . n A 1 199 LEU 199 231 231 LEU LEU A . n A 1 200 LEU 200 232 232 LEU LEU A . n A 1 201 TYR 201 233 233 TYR TYR A . n A 1 202 ASP 202 234 234 ASP ASP A . n A 1 203 MET 203 235 235 MET MET A . n A 1 204 VAL 204 236 236 VAL VAL A . n A 1 205 CYS 205 237 237 CYS CYS A . n A 1 206 GLY 206 238 238 GLY GLY A . n A 1 207 ASP 207 239 239 ASP ASP A . n A 1 208 ILE 208 240 240 ILE ILE A . n A 1 209 PRO 209 241 241 PRO PRO A . n A 1 210 PHE 210 242 242 PHE PHE A . n A 1 211 GLU 211 243 243 GLU GLU A . n A 1 212 HIS 212 244 244 HIS HIS A . n A 1 213 ASP 213 245 245 ASP ASP A . n A 1 214 GLU 214 246 246 GLU GLU A . n A 1 215 GLU 215 247 247 GLU GLU A . n A 1 216 ILE 216 248 248 ILE ILE A . n A 1 217 ILE 217 249 249 ILE ILE A . n A 1 218 ARG 218 250 250 ARG ARG A . n A 1 219 GLY 219 251 251 GLY GLY A . n A 1 220 GLN 220 252 252 GLN GLN A . n A 1 221 VAL 221 253 253 VAL VAL A . n A 1 222 PHE 222 254 254 PHE PHE A . n A 1 223 PHE 223 255 255 PHE PHE A . n A 1 224 ARG 224 256 256 ARG ARG A . n A 1 225 GLN 225 257 257 GLN GLN A . n A 1 226 ARG 226 258 258 ARG ARG A . n A 1 227 VAL 227 259 259 VAL VAL A . n A 1 228 SER 228 260 260 SER SER A . n A 1 229 SEP 229 261 261 SEP SEP A . n A 1 230 GLU 230 262 262 GLU GLU A . n A 1 231 CYS 231 263 263 CYS CYS A . n A 1 232 GLN 232 264 264 GLN GLN A . n A 1 233 HIS 233 265 265 HIS HIS A . n A 1 234 LEU 234 266 266 LEU LEU A . n A 1 235 ILE 235 267 267 ILE ILE A . n A 1 236 ARG 236 268 268 ARG ARG A . n A 1 237 TRP 237 269 269 TRP TRP A . n A 1 238 CYS 238 270 270 CYS CYS A . n A 1 239 LEU 239 271 271 LEU LEU A . n A 1 240 ALA 240 272 272 ALA ALA A . n A 1 241 LEU 241 273 273 LEU LEU A . n A 1 242 ARG 242 274 274 ARG ARG A . n A 1 243 PRO 243 275 275 PRO PRO A . n A 1 244 SER 244 276 276 SER SER A . n A 1 245 ASP 245 277 277 ASP ASP A . n A 1 246 ARG 246 278 278 ARG ARG A . n A 1 247 PRO 247 279 279 PRO PRO A . n A 1 248 THR 248 280 280 THR THR A . n A 1 249 PHE 249 281 281 PHE PHE A . n A 1 250 GLU 250 282 282 GLU GLU A . n A 1 251 GLU 251 283 283 GLU GLU A . n A 1 252 ILE 252 284 284 ILE ILE A . n A 1 253 GLN 253 285 285 GLN GLN A . n A 1 254 ASN 254 286 286 ASN ASN A . n A 1 255 HIS 255 287 287 HIS HIS A . n A 1 256 PRO 256 288 288 PRO PRO A . n A 1 257 TRP 257 289 289 TRP TRP A . n A 1 258 MET 258 290 290 MET MET A . n A 1 259 GLN 259 291 291 GLN GLN A . n A 1 260 ASP 260 292 292 ASP ASP A . n A 1 261 VAL 261 293 293 VAL VAL A . n A 1 262 LEU 262 294 294 LEU LEU A . n A 1 263 LEU 263 295 295 LEU LEU A . n A 1 264 PRO 264 296 296 PRO PRO A . n A 1 265 GLN 265 297 297 GLN GLN A . n A 1 266 GLU 266 298 298 GLU GLU A . n A 1 267 THR 267 299 299 THR THR A . n A 1 268 ALA 268 300 300 ALA ALA A . n A 1 269 GLU 269 301 301 GLU GLU A . n A 1 270 ILE 270 302 302 ILE ILE A . n A 1 271 HIS 271 303 303 HIS HIS A . n A 1 272 LEU 272 304 304 LEU LEU A . n A 1 273 HIS 273 305 305 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN 1 306 201 ADN ADN A . C 3 HOH 1 307 1 HOH HOH A . C 3 HOH 2 308 2 HOH HOH A . C 3 HOH 3 309 3 HOH HOH A . C 3 HOH 4 310 4 HOH HOH A . C 3 HOH 5 311 5 HOH HOH A . C 3 HOH 6 312 6 HOH HOH A . C 3 HOH 7 313 7 HOH HOH A . C 3 HOH 8 314 8 HOH HOH A . C 3 HOH 9 315 9 HOH HOH A . C 3 HOH 10 316 10 HOH HOH A . C 3 HOH 11 317 11 HOH HOH A . C 3 HOH 12 318 12 HOH HOH A . C 3 HOH 13 319 13 HOH HOH A . C 3 HOH 14 320 14 HOH HOH A . C 3 HOH 15 321 15 HOH HOH A . C 3 HOH 16 322 16 HOH HOH A . C 3 HOH 17 323 17 HOH HOH A . C 3 HOH 18 324 18 HOH HOH A . C 3 HOH 19 325 19 HOH HOH A . C 3 HOH 20 326 20 HOH HOH A . C 3 HOH 21 327 21 HOH HOH A . C 3 HOH 22 328 22 HOH HOH A . C 3 HOH 23 329 23 HOH HOH A . C 3 HOH 24 330 24 HOH HOH A . C 3 HOH 25 331 25 HOH HOH A . C 3 HOH 26 332 26 HOH HOH A . C 3 HOH 27 333 27 HOH HOH A . C 3 HOH 28 334 28 HOH HOH A . C 3 HOH 29 335 29 HOH HOH A . C 3 HOH 30 336 30 HOH HOH A . C 3 HOH 31 337 31 HOH HOH A . C 3 HOH 32 338 32 HOH HOH A . C 3 HOH 33 339 33 HOH HOH A . C 3 HOH 34 340 34 HOH HOH A . C 3 HOH 35 341 35 HOH HOH A . C 3 HOH 36 342 36 HOH HOH A . C 3 HOH 37 343 37 HOH HOH A . C 3 HOH 38 344 38 HOH HOH A . C 3 HOH 39 345 39 HOH HOH A . C 3 HOH 40 346 40 HOH HOH A . C 3 HOH 41 347 41 HOH HOH A . C 3 HOH 42 348 42 HOH HOH A . C 3 HOH 43 349 43 HOH HOH A . C 3 HOH 44 350 44 HOH HOH A . C 3 HOH 45 351 45 HOH HOH A . C 3 HOH 46 352 46 HOH HOH A . C 3 HOH 47 353 48 HOH HOH A . C 3 HOH 48 354 49 HOH HOH A . C 3 HOH 49 355 50 HOH HOH A . C 3 HOH 50 356 51 HOH HOH A . C 3 HOH 51 357 52 HOH HOH A . C 3 HOH 52 358 53 HOH HOH A . C 3 HOH 53 359 54 HOH HOH A . C 3 HOH 54 360 55 HOH HOH A . C 3 HOH 55 361 56 HOH HOH A . C 3 HOH 56 362 57 HOH HOH A . C 3 HOH 57 363 58 HOH HOH A . C 3 HOH 58 364 59 HOH HOH A . C 3 HOH 59 365 60 HOH HOH A . C 3 HOH 60 366 61 HOH HOH A . C 3 HOH 61 367 62 HOH HOH A . C 3 HOH 62 368 63 HOH HOH A . C 3 HOH 63 369 64 HOH HOH A . C 3 HOH 64 370 65 HOH HOH A . C 3 HOH 65 371 66 HOH HOH A . C 3 HOH 66 372 67 HOH HOH A . C 3 HOH 67 373 68 HOH HOH A . C 3 HOH 68 374 69 HOH HOH A . C 3 HOH 69 375 70 HOH HOH A . C 3 HOH 70 376 71 HOH HOH A . C 3 HOH 71 377 72 HOH HOH A . C 3 HOH 72 378 73 HOH HOH A . C 3 HOH 73 379 74 HOH HOH A . C 3 HOH 74 380 75 HOH HOH A . C 3 HOH 75 381 76 HOH HOH A . C 3 HOH 76 382 77 HOH HOH A . C 3 HOH 77 383 78 HOH HOH A . C 3 HOH 78 384 79 HOH HOH A . C 3 HOH 79 385 80 HOH HOH A . C 3 HOH 80 386 81 HOH HOH A . C 3 HOH 81 387 82 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CME 129 A CME 161 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' 2 A SEP 229 A SEP 261 ? SER PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 8.0SSI 'Feb 4 2003' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data processing' http://www.msc.com/protein/dtrek.html ? ? 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran ? 2 PDB_EXTRACT 1.501 'July 12, 2004' program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 d*TREK . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 35 ? ? -69.91 59.71 2 1 SER A 36 ? ? -176.84 -35.91 3 1 PHE A 49 ? ? -170.66 -12.13 4 1 SER A 59 ? ? 167.53 -22.04 5 1 ASP A 60 ? ? -166.57 11.60 6 1 ASN A 61 ? ? 48.75 29.12 7 1 SER A 97 ? ? -96.02 39.97 8 1 PHE A 100 ? ? -36.85 124.52 9 1 ARG A 166 ? ? 69.57 -1.62 10 1 ASP A 167 ? ? -142.70 44.16 11 1 ASP A 186 ? ? 59.13 80.78 12 1 PHE A 201 ? ? -165.00 118.47 13 1 ASP A 239 ? ? 179.83 153.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 79 ? CG ? A GLU 47 CG 2 1 Y 1 A GLU 79 ? CD ? A GLU 47 CD 3 1 Y 1 A GLU 79 ? OE1 ? A GLU 47 OE1 4 1 Y 1 A GLU 79 ? OE2 ? A GLU 47 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 80 ? A LEU 48 2 1 Y 1 A PRO 81 ? A PRO 49 3 1 Y 1 A ASN 82 ? A ASN 50 4 1 Y 1 A GLY 83 ? A GLY 51 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE ADN 3 water HOH #