HEADER OXIDOREDUCTASE 12-JAN-05 1YIQ TITLE MOLECULAR CLONING AND STRUCTURAL ANALYSIS OF QUINOHEMOPROTEIN ALCOHOL TITLE 2 DEHYDROGENASE ADHIIG FROM PSEUDOMONAS PUTIDA HK5. COMPARIISON TO THE TITLE 3 OTHER QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE ADHIIB FOUND IN THE SAME TITLE 4 MICROORGANISM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.99.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: HK5 KEYWDS QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE, ELECTRON TRANSFER, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.TOYAMA,Z.W.CHEN,M.FUKUMOTO,O.ADACHI,K.MATSUSHITA,F.S.MATHEWS REVDAT 5 23-AUG-23 1YIQ 1 REMARK REVDAT 4 03-MAR-21 1YIQ 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK ATOM REVDAT 3 24-FEB-09 1YIQ 1 VERSN REVDAT 2 14-MAR-06 1YIQ 1 JRNL REVDAT 1 16-AUG-05 1YIQ 0 JRNL AUTH H.TOYAMA,Z.W.CHEN,M.FUKUMOTO,O.ADACHI,K.MATSUSHITA, JRNL AUTH 2 F.S.MATHEWS JRNL TITL MOLECULAR CLONING AND STRUCTURAL ANALYSIS OF JRNL TITL 2 QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE ADH-IIG FROM JRNL TITL 3 PSEUDOMONAS PUTIDA HK5 JRNL REF J.MOL.BIOL. V. 352 91 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16061256 JRNL DOI 10.1016/J.JMB.2005.06.078 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.CHEN,K.MATSUSHITA,T.YAMASHITA,T.FUJII,H.TOYAMA,O.ADACHI, REMARK 1 AUTH 2 H.D.BELLAMY,F.S.MATHEWS REMARK 1 TITL STRUCTURE AT 1.9 A RESOLUTION OF A QUINOHEMOPROTEIN ALCOHOL REMARK 1 TITL 2 DEHYDROGENASE FROM PSEUDOMONAS PUTIDA HK5 REMARK 1 REF STRUCTURE V. 10 837 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 36178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3617 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2686 REMARK 3 BIN FREE R VALUE : 0.3344 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 565 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.930 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4, CCP4 (MOLREP) REMARK 200 STARTING MODEL: PDB ENTRY 1KV9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, 1,2-PROPANEDIOL, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.29800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.59600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.94700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 198.24500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.64900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 685 REMARK 465 LYS A 686 REMARK 465 SER A 687 REMARK 465 SER A 688 REMARK 465 HIS A 689 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 610 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 HIS A 610 ND1 - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 -52.61 69.51 REMARK 500 LYS A 38 21.31 -143.67 REMARK 500 ASP A 101 105.49 -56.62 REMARK 500 ASP A 111 153.87 77.88 REMARK 500 TRP A 120 127.55 -174.72 REMARK 500 LYS A 121 60.74 37.44 REMARK 500 ASP A 130 8.48 -65.21 REMARK 500 ALA A 236 77.80 -109.81 REMARK 500 ASP A 238 -98.59 -148.48 REMARK 500 SER A 265 43.54 -143.52 REMARK 500 VAL A 288 -59.11 -125.37 REMARK 500 ASP A 297 125.05 -33.39 REMARK 500 PRO A 326 -178.54 -65.90 REMARK 500 TYR A 372 -19.66 -47.63 REMARK 500 ASN A 375 -173.15 -68.24 REMARK 500 ALA A 384 -150.05 -113.01 REMARK 500 ASP A 390 -145.92 -112.62 REMARK 500 LYS A 456 138.89 -173.08 REMARK 500 ALA A 515 -10.06 73.82 REMARK 500 TYR A 559 93.83 -176.43 REMARK 500 PHE A 639 30.98 -96.09 REMARK 500 GLU A 676 -126.04 -85.28 REMARK 500 ASP A 678 -41.18 160.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1198 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1267 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1375 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1413 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1445 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1456 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 178 OE1 REMARK 620 2 GLU A 178 OE2 47.5 REMARK 620 3 ASN A 255 OD1 119.9 90.5 REMARK 620 4 ASP A 300 OD2 108.3 63.0 70.0 REMARK 620 5 PQQ A 801 N6 75.0 122.4 121.5 165.3 REMARK 620 6 PQQ A 801 O7B 63.4 89.1 78.3 136.6 58.0 REMARK 620 7 PQQ A 801 O5 105.5 129.1 133.9 104.6 61.0 118.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 610 NE2 REMARK 620 2 HEC A 901 NA 90.7 REMARK 620 3 HEC A 901 NB 86.0 90.2 REMARK 620 4 HEC A 901 NC 88.5 178.9 88.9 REMARK 620 5 HEC A 901 ND 93.5 90.6 179.0 90.2 REMARK 620 6 MET A 647 SD 177.9 90.4 92.2 90.4 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KV9 RELATED DB: PDB REMARK 900 STRUCTURE AT 1.9 A RESOLUTION OF A QUINOHEMOPROTEIN ALCOHOL REMARK 900 DEHYDROGENASE FROM PSEUDOMONAS PUTIDA HK5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE WAS NOT REMARK 999 AVAILABLE AT THE TIME OF PROCESSING. DBREF 1YIQ A 1 689 UNP Q4W6G0 Q4W6G0_PSEPU 30 718 SEQRES 1 A 689 ALA ASP ILE PRO ALA ASN VAL ASP GLY ALA ARG ILE ILE SEQRES 2 A 689 ALA ALA ASP LYS GLU PRO GLY ASN TRP MET SER THR GLY SEQRES 3 A 689 ARG THR TYR ASP GLU GLN ARG TYR SER PRO LEU LYS GLN SEQRES 4 A 689 ILE SER ASP GLN ASN VAL GLY GLN LEU GLY LEU ALA TRP SEQRES 5 A 689 SER TYR LYS LEU ASP LEU ASP ARG GLY VAL GLU ALA THR SEQRES 6 A 689 PRO ILE VAL VAL ASP GLY VAL MET TYR THR THR GLY PRO SEQRES 7 A 689 PHE SER VAL VAL TYR ALA LEU ASP ALA ARG ASP GLY ARG SEQRES 8 A 689 LEU ILE TRP LYS TYR ASP PRO GLN SER ASP ARG HIS ARG SEQRES 9 A 689 ALA GLY GLU ALA CYS CYS ASP ALA VAL ASN ARG GLY VAL SEQRES 10 A 689 ALA VAL TRP LYS GLY LYS VAL TYR VAL GLY VAL LEU ASP SEQRES 11 A 689 GLY ARG LEU GLU ALA ILE ASP ALA LYS THR GLY GLN ARG SEQRES 12 A 689 ALA TRP SER VAL ASP THR ARG ALA ASP HIS LYS ARG SER SEQRES 13 A 689 TYR THR ILE THR GLY ALA PRO ARG VAL VAL ASN GLY LYS SEQRES 14 A 689 VAL VAL ILE GLY ASN GLY GLY ALA GLU PHE GLY VAL ARG SEQRES 15 A 689 GLY TYR VAL THR ALA TYR ASP ALA GLU THR GLY LYS GLU SEQRES 16 A 689 ALA TRP ARG PHE TYR THR VAL PRO GLY ASP PRO LYS LEU SEQRES 17 A 689 PRO PRO GLU GLY LYS GLY MET GLU ILE ALA ALA LYS THR SEQRES 18 A 689 TRP PHE GLY ASP ALA TYR VAL GLU GLN GLY GLY GLY GLY SEQRES 19 A 689 THR ALA TRP ASP SER PHE ALA TYR ASP PRO GLU LEU ASN SEQRES 20 A 689 LEU LEU TYR ILE GLY VAL GLY ASN GLY SER LEU TRP ASP SEQRES 21 A 689 PRO LYS TRP ARG SER GLN ALA LYS GLY ASP ASN LEU PHE SEQRES 22 A 689 LEU SER SER ILE VAL ALA VAL ASN ALA ASP THR GLY GLU SEQRES 23 A 689 TYR VAL TRP HIS TYR GLN THR THR PRO GLY ASP ALA TRP SEQRES 24 A 689 ASP TYR THR ALA THR GLN HIS MET ILE LEU ALA GLU LEU SEQRES 25 A 689 PRO ILE ASP GLY LYS PRO ARG LYS VAL LEU MET GLN ALA SEQRES 26 A 689 PRO LYS ASN GLY PHE PHE TYR VAL ILE ASP ARG ALA THR SEQRES 27 A 689 GLY GLU LEU LEU SER ALA LYS GLY ILE VAL PRO GLN SER SEQRES 28 A 689 TRP THR LYS GLY MET ASP MET LYS THR GLY ARG PRO ILE SEQRES 29 A 689 LEU ASP GLU GLU ASN ALA ALA TYR TRP LYS ASN GLY LYS SEQRES 30 A 689 ARG ASN LEU VAL THR PRO ALA PHE TRP GLY ALA HIS ASP SEQRES 31 A 689 TRP GLN PRO MET SER TYR ASN PRO ASP THR GLY LEU VAL SEQRES 32 A 689 TYR ILE PRO ALA HIS ILE MET SER ALA TYR TYR GLU HIS SEQRES 33 A 689 ILE PRO GLU ALA PRO LYS ARG ASN PRO PHE LYS SER MET SEQRES 34 A 689 TYR GLN LEU GLY LEU ARG THR GLY MET MET PRO GLU GLY SEQRES 35 A 689 ALA GLU GLY LEU LEU GLU MET ALA LYS SER TRP SER GLY SEQRES 36 A 689 LYS LEU ILE ALA TRP ASP PRO VAL LYS GLN GLN ALA ALA SEQRES 37 A 689 TRP GLU VAL PRO TYR VAL THR ILE PHE ASN GLY GLY THR SEQRES 38 A 689 LEU SER THR ALA GLY ASN LEU VAL PHE GLU GLY SER ALA SEQRES 39 A 689 ASP GLY ARG VAL ILE ALA TYR ALA ALA ASP THR GLY GLU SEQRES 40 A 689 LYS LEU TRP GLU GLN PRO ALA ALA SER GLY VAL MET ALA SEQRES 41 A 689 ALA PRO VAL THR TYR SER VAL ASP GLY GLU GLN TYR VAL SEQRES 42 A 689 THR PHE MET ALA GLY TRP GLY GLY ALA PHE SER THR PHE SEQRES 43 A 689 ALA GLY ALA LEU SER LEU ARG ALA GLY VAL GLN PRO TYR SEQRES 44 A 689 ALA GLN VAL LEU THR TYR LYS LEU GLY GLY THR ALA LYS SEQRES 45 A 689 LEU GLN GLU PRO ALA PRO ARG PRO ASP THR PRO LYS PRO SEQRES 46 A 689 PRO ALA LEU SER ASN ASP THR ALA SER ILE GLU ALA GLY SEQRES 47 A 689 ALA LYS LEU TYR ASP GLY TYR CYS SER GLN CYS HIS GLY SEQRES 48 A 689 ILE HIS ALA VAL SER GLY GLY VAL LEU PRO ASP LEU ARG SEQRES 49 A 689 LYS LEU THR PRO GLU LYS HIS GLN MET PHE LEU GLY ILE SEQRES 50 A 689 LEU PHE GLY GLY ARG VAL PRO ASP GLY MET PRO SER PHE SEQRES 51 A 689 ALA ASP ALA PHE THR PRO GLU GLN VAL ASP GLN ILE HIS SEQRES 52 A 689 GLN TYR LEU ILE LYS ARG ALA HIS ASP LEU HIS GLN GLU SEQRES 53 A 689 GLY ASP THR TRP LYS GLN PHE SER ALA LYS SER SER HIS HET CA A 802 1 HET PQQ A 801 24 HET HEC A 901 43 HET PGR A 803 5 HET PGR A 804 5 HET PGR A 805 5 HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM HEC HEME C HETNAM PGR R-1,2-PROPANEDIOL FORMUL 2 CA CA 2+ FORMUL 3 PQQ C14 H6 N2 O8 FORMUL 4 HEC C34 H34 FE N4 O4 FORMUL 5 PGR 3(C3 H8 O2) FORMUL 8 HOH *485(H2 O) HELIX 1 1 ASP A 8 ALA A 14 1 7 HELIX 2 2 ALA A 15 GLU A 18 5 4 HELIX 3 3 ASN A 44 GLY A 46 5 3 HELIX 4 4 PRO A 78 SER A 80 5 3 HELIX 5 5 ASP A 101 ALA A 108 5 8 HELIX 6 6 GLY A 212 LYS A 220 1 9 HELIX 7 7 ALA A 226 GLY A 231 1 6 HELIX 8 8 ASP A 260 GLN A 266 1 7 HELIX 9 9 ASP A 366 ALA A 371 1 6 HELIX 10 10 GLY A 442 LYS A 451 1 10 HELIX 11 11 ALA A 542 ALA A 547 1 6 HELIX 12 12 ALA A 547 LEU A 552 1 6 HELIX 13 13 ARG A 553 GLY A 555 5 3 HELIX 14 14 ASP A 591 CYS A 606 1 16 HELIX 15 15 CYS A 606 GLY A 611 1 6 HELIX 16 16 ILE A 612 VAL A 615 5 4 HELIX 17 17 THR A 627 MET A 633 1 7 HELIX 18 18 MET A 633 PHE A 639 1 7 HELIX 19 19 ARG A 642 GLY A 646 5 5 HELIX 20 20 THR A 655 GLU A 676 1 22 HELIX 21 21 TRP A 680 SER A 684 5 5 SHEET 1 A 5 TYR A 34 SER A 35 0 SHEET 2 A 5 THR A 481 THR A 484 1 O SER A 483 N SER A 35 SHEET 3 A 5 LEU A 488 GLY A 492 -1 O PHE A 490 N LEU A 482 SHEET 4 A 5 ARG A 497 ALA A 502 -1 O TYR A 501 N VAL A 489 SHEET 5 A 5 LYS A 508 PRO A 513 -1 O LEU A 509 N ALA A 500 SHEET 1 B 4 LEU A 48 LYS A 55 0 SHEET 2 B 4 GLN A 561 LEU A 567 -1 O THR A 564 N ALA A 51 SHEET 3 B 4 GLU A 530 ALA A 537 -1 N VAL A 533 O TYR A 565 SHEET 4 B 4 VAL A 523 VAL A 527 -1 N VAL A 523 O THR A 534 SHEET 1 C 4 ILE A 67 VAL A 69 0 SHEET 2 C 4 VAL A 72 THR A 76 -1 O TYR A 74 N ILE A 67 SHEET 3 C 4 VAL A 82 ASP A 86 -1 O TYR A 83 N THR A 75 SHEET 4 C 4 LEU A 92 TYR A 96 -1 O TYR A 96 N VAL A 82 SHEET 1 D 4 ALA A 118 TRP A 120 0 SHEET 2 D 4 LYS A 123 GLY A 127 -1 O TYR A 125 N ALA A 118 SHEET 3 D 4 ARG A 132 ASP A 137 -1 O ILE A 136 N VAL A 124 SHEET 4 D 4 ARG A 143 ASP A 148 -1 O ALA A 144 N ALA A 135 SHEET 1 E 4 ARG A 164 VAL A 166 0 SHEET 2 E 4 LYS A 169 ILE A 172 -1 O VAL A 171 N ARG A 164 SHEET 3 E 4 TYR A 184 ASP A 189 -1 O TYR A 188 N VAL A 170 SHEET 4 E 4 GLU A 195 TYR A 200 -1 O ALA A 196 N ALA A 187 SHEET 1 F 2 GLY A 232 GLY A 233 0 SHEET 2 F 2 GLY A 256 SER A 257 -1 O SER A 257 N GLY A 232 SHEET 1 G 4 PHE A 240 ASP A 243 0 SHEET 2 G 4 LEU A 248 GLY A 252 -1 O TYR A 250 N ALA A 241 SHEET 3 G 4 SER A 276 ASN A 281 -1 O VAL A 278 N ILE A 251 SHEET 4 G 4 TYR A 287 GLN A 292 -1 O TRP A 289 N ALA A 279 SHEET 1 H 4 MET A 307 ILE A 314 0 SHEET 2 H 4 LYS A 317 GLN A 324 -1 O ARG A 319 N LEU A 312 SHEET 3 H 4 PHE A 330 ASP A 335 -1 O TYR A 332 N GLN A 324 SHEET 4 H 4 LEU A 341 GLY A 346 -1 O LYS A 345 N PHE A 331 SHEET 1 I 2 THR A 353 ASP A 357 0 SHEET 2 I 2 ARG A 362 LEU A 365 -1 O ILE A 364 N GLY A 355 SHEET 1 J 3 ASN A 379 VAL A 381 0 SHEET 2 J 3 ALA A 412 GLU A 415 -1 O ALA A 412 N VAL A 381 SHEET 3 J 3 ARG A 435 THR A 436 -1 O ARG A 435 N GLU A 415 SHEET 1 K 4 SER A 395 TYR A 396 0 SHEET 2 K 4 VAL A 403 ILE A 409 -1 O TYR A 404 N SER A 395 SHEET 3 K 4 SER A 454 ASP A 461 -1 O TRP A 460 N VAL A 403 SHEET 4 K 4 GLN A 466 TYR A 473 -1 O ALA A 468 N ALA A 459 SSBOND 1 CYS A 109 CYS A 110 1555 1555 2.07 LINK SG CYS A 606 CAB HEC A 901 1555 1555 1.80 LINK SG CYS A 609 CAC HEC A 901 1555 1555 1.85 LINK OE1 GLU A 178 CA CA A 802 1555 1555 2.43 LINK OE2 GLU A 178 CA CA A 802 1555 1555 2.92 LINK OD1 ASN A 255 CA CA A 802 1555 1555 2.48 LINK OD2 ASP A 300 CA CA A 802 1555 1555 2.88 LINK NE2 HIS A 610 FE HEC A 901 1555 1555 2.08 LINK SD MET A 647 FE HEC A 901 1555 1555 2.31 LINK N6 PQQ A 801 CA CA A 802 1555 1555 2.75 LINK O7B PQQ A 801 CA CA A 802 1555 1555 2.63 LINK O5 PQQ A 801 CA CA A 802 1555 1555 2.40 CISPEP 1 SER A 257 LEU A 258 0 -0.77 CISPEP 2 LEU A 272 PHE A 273 0 2.32 CISPEP 3 THR A 382 PRO A 383 0 -0.35 SITE 1 AC1 5 GLU A 178 ASN A 255 ASP A 300 PQQ A 801 SITE 2 AC1 5 PGR A 803 SITE 1 AC2 24 GLU A 63 CYS A 109 CYS A 110 VAL A 113 SITE 2 AC2 24 ARG A 115 THR A 160 GLY A 175 GLY A 176 SITE 3 AC2 24 ALA A 177 GLU A 178 THR A 235 TRP A 237 SITE 4 AC2 24 ASN A 255 ASP A 300 LYS A 327 TRP A 386 SITE 5 AC2 24 ASP A 390 TRP A 391 PHE A 477 ALA A 542 SITE 6 AC2 24 CA A 802 PGR A 803 HOH A1079 HOH A1108 SITE 1 AC3 20 ARG A 60 GLY A 106 TYR A 605 CYS A 606 SITE 2 AC3 20 GLN A 608 CYS A 609 HIS A 610 LEU A 623 SITE 3 AC3 20 LEU A 626 LYS A 630 LEU A 638 ARG A 642 SITE 4 AC3 20 ASP A 645 GLY A 646 MET A 647 PHE A 650 SITE 5 AC3 20 PHE A 654 HOH A1088 HOH A1303 HOH A1373 SITE 1 AC4 8 CYS A 110 GLU A 178 ASP A 300 TRP A 386 SITE 2 AC4 8 ALA A 542 PQQ A 801 CA A 802 HOH A1271 SITE 1 AC5 4 GLU A 441 ILE A 595 TYR A 665 LYS A 668 SITE 1 AC6 7 LEU A 552 ARG A 579 SER A 616 ASP A 622 SITE 2 AC6 7 ARG A 624 LYS A 625 HOH A1201 CRYST1 75.476 75.476 237.894 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013249 0.007649 0.000000 0.00000 SCALE2 0.000000 0.015299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004204 0.00000