HEADER PROTEIN TRANSPORT 13-JAN-05 1YJ7 TITLE CRYSTAL STRUCTURE OF ENTEROPATHOGENIC E.COLI (EPEC) TYPE III SECRETION TITLE 2 SYSTEM PROTEIN ESCJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESCJ; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SIGNAL PEPTIDE-REMOVED AND NON-LIPIDATED, RESIDUES 21-190; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ESCJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS MIXED ALPHA/BETA, EXTENDED LINKER, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.K.YIP,T.G.KIMBROUGH,H.B.FELISE,M.VUCKOVIC,N.A.THOMAS,R.A.PFUETZNER, AUTHOR 2 E.A.FREY,B.B.FINLAY,S.I.MILLER,N.C.J.STRYNADKA REVDAT 6 14-FEB-24 1YJ7 1 REMARK REVDAT 5 20-OCT-21 1YJ7 1 REMARK SEQADV REVDAT 4 24-JUL-19 1YJ7 1 REMARK REVDAT 3 13-JUL-11 1YJ7 1 VERSN REVDAT 2 24-FEB-09 1YJ7 1 VERSN REVDAT 1 07-JUN-05 1YJ7 0 JRNL AUTH C.K.YIP,T.G.KIMBROUGH,H.B.FELISE,M.VUCKOVIC,N.A.THOMAS, JRNL AUTH 2 R.A.PFUETZNER,E.A.FREY,B.B.FINLAY,S.I.MILLER,N.C.STRYNADKA JRNL TITL STRUCTURAL CHARACTERIZATION OF THE MOLECULAR PLATFORM FOR JRNL TITL 2 TYPE III SECRETION SYSTEM ASSEMBLY. JRNL REF NATURE V. 435 702 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 15931226 JRNL DOI 10.1038/NATURE03554 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 91589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 371 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; 0.002 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.232 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; 0.752 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.004 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DI-AMMONIUM HYDROGEN PHOSPHATE, PH REMARK 280 8.2, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.78600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.39300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.58950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.19650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.98250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE TETRAMER IN THE ASYMMETRIC REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 LEU A 95 REMARK 465 VAL A 96 REMARK 465 ALA A 97 REMARK 465 ASN A 134 REMARK 465 ASN A 135 REMARK 465 ASN A 136 REMARK 465 GLU A 137 REMARK 465 SER A 138 REMARK 465 GLN A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 MET B 20 REMARK 465 PRO B 92 REMARK 465 SER B 93 REMARK 465 GLN B 94 REMARK 465 LEU B 95 REMARK 465 VAL B 96 REMARK 465 ALA B 97 REMARK 465 ASN B 134 REMARK 465 ASN B 135 REMARK 465 ASN B 136 REMARK 465 GLU B 137 REMARK 465 SER B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 187 REMARK 465 GLN B 188 REMARK 465 ASP B 189 REMARK 465 GLY B 190 REMARK 465 MET C 20 REMARK 465 PRO C 92 REMARK 465 SER C 93 REMARK 465 GLN C 94 REMARK 465 LEU C 95 REMARK 465 VAL C 96 REMARK 465 ALA C 97 REMARK 465 ASN C 134 REMARK 465 ASN C 135 REMARK 465 ASN C 136 REMARK 465 GLU C 137 REMARK 465 SER C 138 REMARK 465 GLN C 139 REMARK 465 SER C 186 REMARK 465 GLY C 187 REMARK 465 GLN C 188 REMARK 465 ASP C 189 REMARK 465 GLY C 190 REMARK 465 MET D 20 REMARK 465 PRO D 92 REMARK 465 SER D 93 REMARK 465 GLN D 94 REMARK 465 LEU D 95 REMARK 465 VAL D 96 REMARK 465 ALA D 97 REMARK 465 ASN D 134 REMARK 465 ASN D 135 REMARK 465 ASN D 136 REMARK 465 GLU D 137 REMARK 465 SER D 138 REMARK 465 GLN D 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 907 O HOH D 939 1.95 REMARK 500 O HOH B 770 O HOH C 822 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 CYS A 127 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 172 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 126 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP C 52 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP C 126 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 44 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP D 52 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP D 85 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP D 126 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP D 172 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 24 -64.84 -94.62 REMARK 500 LEU B 24 -71.85 -93.57 REMARK 500 LEU D 24 -68.93 -95.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 801 DBREF 1YJ7 A 21 190 UNP Q8VQD3 Q8VQD3_ECOLI 21 190 DBREF 1YJ7 B 21 190 UNP Q8VQD3 Q8VQD3_ECOLI 21 190 DBREF 1YJ7 C 21 190 UNP Q8VQD3 Q8VQD3_ECOLI 21 190 DBREF 1YJ7 D 21 190 UNP Q8VQD3 Q8VQD3_ECOLI 21 190 SEQADV 1YJ7 MET A 20 UNP Q8VQD3 INITIATING METHIONINE SEQADV 1YJ7 ALA A 62 UNP Q8VQD3 GLU 62 ENGINEERED MUTATION SEQADV 1YJ7 ALA A 63 UNP Q8VQD3 LYS 63 ENGINEERED MUTATION SEQADV 1YJ7 ALA A 64 UNP Q8VQD3 GLU 64 ENGINEERED MUTATION SEQADV 1YJ7 MET B 20 UNP Q8VQD3 INITIATING METHIONINE SEQADV 1YJ7 ALA B 62 UNP Q8VQD3 GLU 62 ENGINEERED MUTATION SEQADV 1YJ7 ALA B 63 UNP Q8VQD3 LYS 63 ENGINEERED MUTATION SEQADV 1YJ7 ALA B 64 UNP Q8VQD3 GLU 64 ENGINEERED MUTATION SEQADV 1YJ7 MET C 20 UNP Q8VQD3 INITIATING METHIONINE SEQADV 1YJ7 ALA C 62 UNP Q8VQD3 GLU 62 ENGINEERED MUTATION SEQADV 1YJ7 ALA C 63 UNP Q8VQD3 LYS 63 ENGINEERED MUTATION SEQADV 1YJ7 ALA C 64 UNP Q8VQD3 GLU 64 ENGINEERED MUTATION SEQADV 1YJ7 MET D 20 UNP Q8VQD3 INITIATING METHIONINE SEQADV 1YJ7 ALA D 62 UNP Q8VQD3 GLU 62 ENGINEERED MUTATION SEQADV 1YJ7 ALA D 63 UNP Q8VQD3 LYS 63 ENGINEERED MUTATION SEQADV 1YJ7 ALA D 64 UNP Q8VQD3 GLU 64 ENGINEERED MUTATION SEQRES 1 A 171 MET LYS GLU GLN LEU TYR THR GLY LEU THR GLU LYS GLU SEQRES 2 A 171 ALA ASN GLN MET GLN ALA LEU LEU LEU SER ASN ASP VAL SEQRES 3 A 171 ASN VAL SER LYS GLU MET ASP LYS SER GLY ASN MET THR SEQRES 4 A 171 LEU SER VAL ALA ALA ALA ASP PHE VAL ARG ALA ILE THR SEQRES 5 A 171 ILE LEU ASN ASN ASN GLY PHE PRO LYS LYS LYS PHE ALA SEQRES 6 A 171 ASP ILE GLU VAL ILE PHE PRO PRO SER GLN LEU VAL ALA SEQRES 7 A 171 SER PRO SER GLN GLU ASN ALA LYS ILE ASN TYR LEU LYS SEQRES 8 A 171 GLU GLN ASP ILE GLU ARG LEU LEU SER LYS ILE PRO GLY SEQRES 9 A 171 VAL ILE ASP CYS SER VAL SER LEU ASN VAL ASN ASN ASN SEQRES 10 A 171 GLU SER GLN PRO SER SER ALA ALA VAL LEU VAL ILE SER SEQRES 11 A 171 SER PRO GLU VAL ASN LEU ALA PRO SER VAL ILE GLN ILE SEQRES 12 A 171 LYS ASN LEU VAL LYS ASN SER VAL ASP ASP LEU LYS LEU SEQRES 13 A 171 GLU ASN ILE SER VAL VAL ILE LYS SER SER SER GLY GLN SEQRES 14 A 171 ASP GLY SEQRES 1 B 171 MET LYS GLU GLN LEU TYR THR GLY LEU THR GLU LYS GLU SEQRES 2 B 171 ALA ASN GLN MET GLN ALA LEU LEU LEU SER ASN ASP VAL SEQRES 3 B 171 ASN VAL SER LYS GLU MET ASP LYS SER GLY ASN MET THR SEQRES 4 B 171 LEU SER VAL ALA ALA ALA ASP PHE VAL ARG ALA ILE THR SEQRES 5 B 171 ILE LEU ASN ASN ASN GLY PHE PRO LYS LYS LYS PHE ALA SEQRES 6 B 171 ASP ILE GLU VAL ILE PHE PRO PRO SER GLN LEU VAL ALA SEQRES 7 B 171 SER PRO SER GLN GLU ASN ALA LYS ILE ASN TYR LEU LYS SEQRES 8 B 171 GLU GLN ASP ILE GLU ARG LEU LEU SER LYS ILE PRO GLY SEQRES 9 B 171 VAL ILE ASP CYS SER VAL SER LEU ASN VAL ASN ASN ASN SEQRES 10 B 171 GLU SER GLN PRO SER SER ALA ALA VAL LEU VAL ILE SER SEQRES 11 B 171 SER PRO GLU VAL ASN LEU ALA PRO SER VAL ILE GLN ILE SEQRES 12 B 171 LYS ASN LEU VAL LYS ASN SER VAL ASP ASP LEU LYS LEU SEQRES 13 B 171 GLU ASN ILE SER VAL VAL ILE LYS SER SER SER GLY GLN SEQRES 14 B 171 ASP GLY SEQRES 1 C 171 MET LYS GLU GLN LEU TYR THR GLY LEU THR GLU LYS GLU SEQRES 2 C 171 ALA ASN GLN MET GLN ALA LEU LEU LEU SER ASN ASP VAL SEQRES 3 C 171 ASN VAL SER LYS GLU MET ASP LYS SER GLY ASN MET THR SEQRES 4 C 171 LEU SER VAL ALA ALA ALA ASP PHE VAL ARG ALA ILE THR SEQRES 5 C 171 ILE LEU ASN ASN ASN GLY PHE PRO LYS LYS LYS PHE ALA SEQRES 6 C 171 ASP ILE GLU VAL ILE PHE PRO PRO SER GLN LEU VAL ALA SEQRES 7 C 171 SER PRO SER GLN GLU ASN ALA LYS ILE ASN TYR LEU LYS SEQRES 8 C 171 GLU GLN ASP ILE GLU ARG LEU LEU SER LYS ILE PRO GLY SEQRES 9 C 171 VAL ILE ASP CYS SER VAL SER LEU ASN VAL ASN ASN ASN SEQRES 10 C 171 GLU SER GLN PRO SER SER ALA ALA VAL LEU VAL ILE SER SEQRES 11 C 171 SER PRO GLU VAL ASN LEU ALA PRO SER VAL ILE GLN ILE SEQRES 12 C 171 LYS ASN LEU VAL LYS ASN SER VAL ASP ASP LEU LYS LEU SEQRES 13 C 171 GLU ASN ILE SER VAL VAL ILE LYS SER SER SER GLY GLN SEQRES 14 C 171 ASP GLY SEQRES 1 D 171 MET LYS GLU GLN LEU TYR THR GLY LEU THR GLU LYS GLU SEQRES 2 D 171 ALA ASN GLN MET GLN ALA LEU LEU LEU SER ASN ASP VAL SEQRES 3 D 171 ASN VAL SER LYS GLU MET ASP LYS SER GLY ASN MET THR SEQRES 4 D 171 LEU SER VAL ALA ALA ALA ASP PHE VAL ARG ALA ILE THR SEQRES 5 D 171 ILE LEU ASN ASN ASN GLY PHE PRO LYS LYS LYS PHE ALA SEQRES 6 D 171 ASP ILE GLU VAL ILE PHE PRO PRO SER GLN LEU VAL ALA SEQRES 7 D 171 SER PRO SER GLN GLU ASN ALA LYS ILE ASN TYR LEU LYS SEQRES 8 D 171 GLU GLN ASP ILE GLU ARG LEU LEU SER LYS ILE PRO GLY SEQRES 9 D 171 VAL ILE ASP CYS SER VAL SER LEU ASN VAL ASN ASN ASN SEQRES 10 D 171 GLU SER GLN PRO SER SER ALA ALA VAL LEU VAL ILE SER SEQRES 11 D 171 SER PRO GLU VAL ASN LEU ALA PRO SER VAL ILE GLN ILE SEQRES 12 D 171 LYS ASN LEU VAL LYS ASN SER VAL ASP ASP LEU LYS LEU SEQRES 13 D 171 GLU ASN ILE SER VAL VAL ILE LYS SER SER SER GLY GLN SEQRES 14 D 171 ASP GLY HET PO4 A 703 5 HET GOL A 800 6 HET PO4 B 701 5 HET PO4 C 702 5 HET PO4 D 704 5 HET GOL D 801 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PO4 4(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *530(H2 O) HELIX 1 1 THR A 29 ASN A 43 1 15 HELIX 2 2 ASP A 65 ASN A 76 1 12 HELIX 3 3 ASP A 85 PHE A 90 1 6 HELIX 4 4 SER A 98 SER A 119 1 22 HELIX 5 5 LEU A 155 PRO A 157 5 3 HELIX 6 6 SER A 158 VAL A 170 1 13 HELIX 7 7 LYS A 174 GLU A 176 5 3 HELIX 8 8 THR B 29 ASN B 43 1 15 HELIX 9 9 ASP B 65 ASN B 76 1 12 HELIX 10 10 ASP B 85 PHE B 90 1 6 HELIX 11 11 SER B 98 SER B 119 1 22 HELIX 12 12 LEU B 155 PRO B 157 5 3 HELIX 13 13 SER B 158 VAL B 170 1 13 HELIX 14 14 LYS B 174 GLU B 176 5 3 HELIX 15 15 THR C 29 ASN C 43 1 15 HELIX 16 16 ASP C 65 ASN C 76 1 12 HELIX 17 17 ASP C 85 PHE C 90 1 6 HELIX 18 18 SER C 98 SER C 119 1 22 HELIX 19 19 LEU C 155 PRO C 157 5 3 HELIX 20 20 SER C 158 VAL C 170 1 13 HELIX 21 21 LYS C 174 GLU C 176 5 3 HELIX 22 22 THR D 29 ASN D 43 1 15 HELIX 23 23 ASP D 65 ASN D 76 1 12 HELIX 24 24 ASP D 85 PHE D 90 1 6 HELIX 25 25 SER D 98 SER D 119 1 22 HELIX 26 26 LEU D 155 PRO D 157 5 3 HELIX 27 27 SER D 158 VAL D 170 1 13 HELIX 28 28 LYS D 174 GLU D 176 5 3 SHEET 1 A 3 LYS A 21 LEU A 28 0 SHEET 2 A 3 MET A 57 ALA A 62 -1 O LEU A 59 N LEU A 24 SHEET 3 A 3 SER A 48 MET A 51 -1 N GLU A 50 O THR A 58 SHEET 1 B 3 VAL A 124 ASN A 132 0 SHEET 2 B 3 SER A 142 SER A 149 -1 O ILE A 148 N ILE A 125 SHEET 3 B 3 ILE A 178 SER A 184 1 O SER A 179 N VAL A 145 SHEET 1 C 3 GLU B 22 LEU B 28 0 SHEET 2 C 3 MET B 57 VAL B 61 -1 O VAL B 61 N GLU B 22 SHEET 3 C 3 VAL B 47 MET B 51 -1 N GLU B 50 O THR B 58 SHEET 1 D 3 VAL B 124 ASN B 132 0 SHEET 2 D 3 SER B 142 SER B 149 -1 O ILE B 148 N ILE B 125 SHEET 3 D 3 ILE B 178 SER B 184 1 O VAL B 181 N VAL B 145 SHEET 1 E 3 GLU C 22 LEU C 28 0 SHEET 2 E 3 MET C 57 VAL C 61 -1 O LEU C 59 N LEU C 24 SHEET 3 E 3 VAL C 47 MET C 51 -1 N GLU C 50 O THR C 58 SHEET 1 F 3 VAL C 124 ASN C 132 0 SHEET 2 F 3 SER C 142 SER C 149 -1 O ILE C 148 N ILE C 125 SHEET 3 F 3 ILE C 178 SER C 184 1 O SER C 179 N VAL C 145 SHEET 1 G 3 GLU D 22 LEU D 28 0 SHEET 2 G 3 MET D 57 VAL D 61 -1 O VAL D 61 N GLU D 22 SHEET 3 G 3 VAL D 47 MET D 51 -1 N GLU D 50 O THR D 58 SHEET 1 H 3 VAL D 124 ASN D 132 0 SHEET 2 H 3 SER D 142 SER D 149 -1 O ILE D 148 N ILE D 125 SHEET 3 H 3 ILE D 178 SER D 184 1 O SER D 179 N VAL D 145 CISPEP 1 PHE A 78 PRO A 79 0 -4.40 CISPEP 2 PHE B 78 PRO B 79 0 -2.97 CISPEP 3 PHE C 78 PRO C 79 0 -5.66 CISPEP 4 PHE D 78 PRO D 79 0 -4.91 SITE 1 AC1 6 LYS A 120 GLN B 112 GLU B 115 HOH B 776 SITE 2 AC1 6 HOH B 783 LYS C 81 SITE 1 AC2 8 ARG B 116 LYS B 120 GLN C 112 GLU C 115 SITE 2 AC2 8 HOH C 749 HOH C 770 HOH C 822 LYS D 81 SITE 1 AC3 7 GLN A 112 GLU A 115 HOH A 849 HOH A 907 SITE 2 AC3 7 HOH A 938 HOH A 939 LYS D 120 SITE 1 AC4 7 LYS A 81 LYS C 120 GLN D 112 GLU D 115 SITE 2 AC4 7 HOH D 843 HOH D 872 HOH D 942 SITE 1 AC5 10 MET A 20 ALA A 62 ALA A 63 ALA A 64 SITE 2 AC5 10 SER D 149 VAL D 153 ASN D 154 LEU D 155 SITE 3 AC5 10 ILE D 182 HOH D 808 SITE 1 AC6 5 LYS D 163 ILE D 178 SER D 179 VAL D 180 SITE 2 AC6 5 HOH D 924 CRYST1 164.817 164.817 67.179 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006067 0.003503 0.000000 0.00000 SCALE2 0.000000 0.007006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014886 0.00000