HEADER TRANSCRIPTION 14-JAN-05 1YJE TITLE CRYSTAL STRUCTURE OF THE RNGFI-B LIGAND-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR4A1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR HMR, NERVE GROWTH FACTOR INDUCED COMPND 6 PROTEIN I-B, NGFI-B, NUR77, RNGFI-B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NR4A1, HMR, NGFIB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS NGFI-B, NUR77, NUCLEAR RECEPTOR, LIGAND-BINDING DOMAIN, NOVEL KEYWDS 2 COREGULATOR INTERFACE, CELL-SPECIFIC, STRUCTURAL PROTEOMICS IN KEYWDS 3 EUROPE, SPINE, STRUCTURAL GENOMICS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.FLAIG,H.GRESCHIK,C.PELUSO-ILTIS,D.MORAS,STRUCTURAL PROTEOMICS IN AUTHOR 2 EUROPE (SPINE) REVDAT 5 25-OCT-23 1YJE 1 SEQADV REVDAT 4 11-OCT-17 1YJE 1 REMARK REVDAT 3 24-FEB-09 1YJE 1 VERSN REVDAT 2 17-MAY-05 1YJE 1 JRNL REVDAT 1 22-FEB-05 1YJE 0 JRNL AUTH R.FLAIG,H.GRESCHIK,C.PELUSO-ILTIS,D.MORAS JRNL TITL STRUCTURAL BASIS FOR THE CELL-SPECIFIC ACTIVITIES OF THE JRNL TITL 2 NGFI-B AND THE NURR1 LIGAND-BINDING DOMAIN. JRNL REF J.BIOL.CHEM. V. 280 19250 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15716272 JRNL DOI 10.1074/JBC.M413175200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.406 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.745 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1761 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2390 ; 1.521 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;35.141 ;23.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;20.088 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;25.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1309 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 838 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1191 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.582 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1161 ; 0.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1799 ; 1.779 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 2.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 591 ; 3.323 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : SAGITTAL BENDER (MIRROR) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB EBTRY 1PDU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, BISTRIS, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.21100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.31850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.15925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.21100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.47775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.47775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.21100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.15925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 45.21100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.31850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.21100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.31850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.21100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.47775 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.15925 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.21100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.15925 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.47775 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.21100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.21100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.31850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 41 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 334 REMARK 465 SER A 335 REMARK 465 SER A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 SER A 343 REMARK 465 SER A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 VAL A 347 REMARK 465 PRO A 348 REMARK 465 ARG A 349 REMARK 465 GLY A 350 REMARK 465 SER A 351 REMARK 465 HIS A 352 REMARK 465 MET A 353 REMARK 465 GLN A 354 REMARK 465 PRO A 355 REMARK 465 PRO A 356 REMARK 465 ASP A 357 REMARK 465 ALA A 358 REMARK 465 SER A 359 REMARK 465 PRO A 360 REMARK 465 THR A 361 REMARK 465 ALA A 542 REMARK 465 GLY A 543 REMARK 465 ASP A 544 REMARK 465 PRO A 545 REMARK 465 GLN A 546 REMARK 465 PRO A 547 REMARK 465 ALA A 548 REMARK 465 LEU A 595 REMARK 465 SER A 596 REMARK 465 PHE A 597 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ASP A 513 CG OD1 OD2 REMARK 470 LEU A 517 CG CD1 CD2 REMARK 470 GLN A 518 CG CD OE1 NE2 REMARK 470 ASP A 519 CG OD1 OD2 REMARK 470 ARG A 521 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 522 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 529 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2 O HOH A 38 1.91 REMARK 500 O HOH A 6 O HOH A 39 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 382 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 414 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 424 101.00 -50.35 REMARK 500 HIS A 515 106.04 -38.49 REMARK 500 GLN A 518 -76.52 -44.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IGBMC-1013-000 RELATED DB: TARGETDB DBREF 1YJE A 354 597 UNP P22829 NR4A1_RAT 354 597 SEQADV 1YJE GLY A 334 UNP P22829 EXPRESSION TAG SEQADV 1YJE SER A 335 UNP P22829 EXPRESSION TAG SEQADV 1YJE SER A 336 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 337 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 338 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 339 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 340 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 341 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 342 UNP P22829 EXPRESSION TAG SEQADV 1YJE SER A 343 UNP P22829 EXPRESSION TAG SEQADV 1YJE SER A 344 UNP P22829 EXPRESSION TAG SEQADV 1YJE GLY A 345 UNP P22829 EXPRESSION TAG SEQADV 1YJE LEU A 346 UNP P22829 EXPRESSION TAG SEQADV 1YJE VAL A 347 UNP P22829 EXPRESSION TAG SEQADV 1YJE PRO A 348 UNP P22829 EXPRESSION TAG SEQADV 1YJE ARG A 349 UNP P22829 EXPRESSION TAG SEQADV 1YJE GLY A 350 UNP P22829 EXPRESSION TAG SEQADV 1YJE SER A 351 UNP P22829 EXPRESSION TAG SEQADV 1YJE HIS A 352 UNP P22829 EXPRESSION TAG SEQADV 1YJE MET A 353 UNP P22829 EXPRESSION TAG SEQRES 1 A 264 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 264 VAL PRO ARG GLY SER HIS MET GLN PRO PRO ASP ALA SER SEQRES 3 A 264 PRO THR ASN LEU LEU THR SER LEU ILE ARG ALA HIS LEU SEQRES 4 A 264 ASP SER GLY PRO ASN THR ALA LYS LEU ASP TYR SER LYS SEQRES 5 A 264 PHE GLN GLU LEU VAL LEU PRO ARG PHE GLY LYS GLU ASP SEQRES 6 A 264 ALA GLY ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SEQRES 7 A 264 SER LEU ASP VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO SEQRES 8 A 264 GLY PHE ILE GLU LEU SER PRO GLY ASP GLN ASP LEU LEU SEQRES 9 A 264 LEU GLU SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU SEQRES 10 A 264 ALA TYR ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE SEQRES 11 A 264 CYS SER GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG SEQRES 12 A 264 GLY PHE GLY ASP TRP ILE ASP ASN ILE LEU ALA PHE SER SEQRES 13 A 264 ARG SER LEU HIS SER LEU GLY VAL ASP VAL PRO ALA PHE SEQRES 14 A 264 ALA CYS LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS SEQRES 15 A 264 GLY LEU GLN ASP PRO ARG ARG VAL GLU GLU LEU GLN ASN SEQRES 16 A 264 ARG ILE ALA SER CYS LEU LYS GLU HIS MET ALA ALA VAL SEQRES 17 A 264 ALA GLY ASP PRO GLN PRO ALA SER CYS LEU SER ARG LEU SEQRES 18 A 264 LEU GLY LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN SEQRES 19 A 264 GLY LEU GLN ARG ILE PHE CYS LEU LYS LEU GLU ASP LEU SEQRES 20 A 264 VAL PRO PRO PRO PRO ILE VAL ASP LYS ILE PHE MET ASP SEQRES 21 A 264 THR LEU SER PHE FORMUL 2 HOH *69(H2 O) HELIX 1 1 ASN A 362 GLY A 375 1 14 HELIX 2 2 ASN A 377 LEU A 381 5 5 HELIX 3 3 ASP A 398 LYS A 422 1 25 HELIX 4 4 SER A 430 SER A 454 1 25 HELIX 5 5 ARG A 471 GLY A 479 1 9 HELIX 6 6 ASP A 480 GLY A 496 1 17 HELIX 7 7 ASP A 498 ILE A 511 1 14 HELIX 8 8 ASP A 519 VAL A 541 1 23 HELIX 9 9 SER A 549 GLY A 556 1 8 HELIX 10 10 LYS A 557 ASP A 579 1 23 HELIX 11 11 PRO A 584 ASP A 593 1 10 SHEET 1 A 2 LYS A 460 ILE A 462 0 SHEET 2 A 2 VAL A 468 HIS A 470 -1 O LEU A 469 N LEU A 461 CRYST1 90.422 90.422 140.637 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011059 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007111 0.00000