data_1YJK # _entry.id 1YJK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YJK RCSB RCSB031585 WWPDB D_1000031585 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YJL . unspecified PDB 1YI9 'oxidized PHM-M314I' unspecified PDB 1YIP 'oxidized PHM in M314I crystal form' unspecified PDB 1PHM 'oxidized PHM' unspecified PDB 1OPM 'oxidized PHM with substrate' unspecified PDB 3PHM 'reduced PHM' unspecified PDB 1SDW 'reduced PHM with substrate and dioxygen' unspecified # _pdbx_database_status.entry_id 1YJK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-01-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Siebert, X.' 1 'Eipper, B.A.' 2 'Mains, R.E.' 3 'Prigge, S.T.' 4 'Blackburn, N.J.' 5 'Amzel, L.M.' 6 # _citation.id primary _citation.title 'The Catalytic Copper of Peptidylglycine alpha-Hydroxylating Monooxygenase also Plays a Critical Structural Role.' _citation.journal_abbrev Biophys.J. _citation.journal_volume 89 _citation.page_first 3312 _citation.page_last 3319 _citation.year 2005 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16100265 _citation.pdbx_database_id_DOI 10.1529/biophysj.105.066100 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Siebert, X.' 1 primary 'Eipper, B.A.' 2 primary 'Mains, R.E.' 3 primary 'Prigge, S.T.' 4 primary 'Blackburn, N.J.' 5 primary 'Amzel, L.M.' 6 # _cell.entry_id 1YJK _cell.length_a 59.146 _cell.length_b 66.335 _cell.length_c 69.917 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YJK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-glycine alpha-amidating monooxygenase' 34158.184 1 1.14.17.3 ? 'Peptidylglycine alpha-Hydroxylating Monooxygenase (Residues 50-355)' ? 2 non-polymer syn 'COPPER (II) ION' 63.546 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PAM # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDEG TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMS VDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDIL AARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIP ; _entity_poly.pdbx_seq_one_letter_code_can ;TIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDEG TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMS VDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDIL AARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ILE n 1 3 GLY n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 PRO n 1 8 LEU n 1 9 ASP n 1 10 ALA n 1 11 SER n 1 12 ASP n 1 13 PHE n 1 14 ALA n 1 15 LEU n 1 16 ASP n 1 17 ILE n 1 18 ARG n 1 19 MET n 1 20 PRO n 1 21 GLY n 1 22 VAL n 1 23 THR n 1 24 PRO n 1 25 LYS n 1 26 GLU n 1 27 SER n 1 28 ASP n 1 29 THR n 1 30 TYR n 1 31 PHE n 1 32 CYS n 1 33 MET n 1 34 SER n 1 35 MET n 1 36 ARG n 1 37 LEU n 1 38 PRO n 1 39 VAL n 1 40 ASP n 1 41 GLU n 1 42 GLU n 1 43 ALA n 1 44 PHE n 1 45 VAL n 1 46 ILE n 1 47 ASP n 1 48 PHE n 1 49 LYS n 1 50 PRO n 1 51 ARG n 1 52 ALA n 1 53 SER n 1 54 MET n 1 55 ASP n 1 56 THR n 1 57 VAL n 1 58 HIS n 1 59 HIS n 1 60 MET n 1 61 LEU n 1 62 LEU n 1 63 PHE n 1 64 GLY n 1 65 CYS n 1 66 ASN n 1 67 MET n 1 68 PRO n 1 69 SER n 1 70 SER n 1 71 THR n 1 72 GLY n 1 73 SER n 1 74 TYR n 1 75 TRP n 1 76 PHE n 1 77 CYS n 1 78 ASP n 1 79 GLU n 1 80 GLY n 1 81 THR n 1 82 CYS n 1 83 THR n 1 84 ASP n 1 85 LYS n 1 86 ALA n 1 87 ASN n 1 88 ILE n 1 89 LEU n 1 90 TYR n 1 91 ALA n 1 92 TRP n 1 93 ALA n 1 94 ARG n 1 95 ASN n 1 96 ALA n 1 97 PRO n 1 98 PRO n 1 99 THR n 1 100 ARG n 1 101 LEU n 1 102 PRO n 1 103 LYS n 1 104 GLY n 1 105 VAL n 1 106 GLY n 1 107 PHE n 1 108 ARG n 1 109 VAL n 1 110 GLY n 1 111 GLY n 1 112 GLU n 1 113 THR n 1 114 GLY n 1 115 SER n 1 116 LYS n 1 117 TYR n 1 118 PHE n 1 119 VAL n 1 120 LEU n 1 121 GLN n 1 122 VAL n 1 123 HIS n 1 124 TYR n 1 125 GLY n 1 126 ASP n 1 127 ILE n 1 128 SER n 1 129 ALA n 1 130 PHE n 1 131 ARG n 1 132 ASP n 1 133 ASN n 1 134 HIS n 1 135 LYS n 1 136 ASP n 1 137 CYS n 1 138 SER n 1 139 GLY n 1 140 VAL n 1 141 SER n 1 142 VAL n 1 143 HIS n 1 144 LEU n 1 145 THR n 1 146 ARG n 1 147 VAL n 1 148 PRO n 1 149 GLN n 1 150 PRO n 1 151 LEU n 1 152 ILE n 1 153 ALA n 1 154 GLY n 1 155 MET n 1 156 TYR n 1 157 LEU n 1 158 MET n 1 159 MET n 1 160 SER n 1 161 VAL n 1 162 ASP n 1 163 THR n 1 164 VAL n 1 165 ILE n 1 166 PRO n 1 167 PRO n 1 168 GLY n 1 169 GLU n 1 170 LYS n 1 171 VAL n 1 172 VAL n 1 173 ASN n 1 174 ALA n 1 175 ASP n 1 176 ILE n 1 177 SER n 1 178 CYS n 1 179 GLN n 1 180 TYR n 1 181 LYS n 1 182 MET n 1 183 TYR n 1 184 PRO n 1 185 MET n 1 186 HIS n 1 187 VAL n 1 188 PHE n 1 189 ALA n 1 190 TYR n 1 191 ARG n 1 192 VAL n 1 193 HIS n 1 194 THR n 1 195 HIS n 1 196 HIS n 1 197 LEU n 1 198 GLY n 1 199 LYS n 1 200 VAL n 1 201 VAL n 1 202 SER n 1 203 GLY n 1 204 TYR n 1 205 ARG n 1 206 VAL n 1 207 ARG n 1 208 ASN n 1 209 GLY n 1 210 GLN n 1 211 TRP n 1 212 THR n 1 213 LEU n 1 214 ILE n 1 215 GLY n 1 216 ARG n 1 217 GLN n 1 218 ASN n 1 219 PRO n 1 220 GLN n 1 221 LEU n 1 222 PRO n 1 223 GLN n 1 224 ALA n 1 225 PHE n 1 226 TYR n 1 227 PRO n 1 228 VAL n 1 229 GLU n 1 230 HIS n 1 231 PRO n 1 232 VAL n 1 233 ASP n 1 234 VAL n 1 235 THR n 1 236 PHE n 1 237 GLY n 1 238 ASP n 1 239 ILE n 1 240 LEU n 1 241 ALA n 1 242 ALA n 1 243 ARG n 1 244 CYS n 1 245 VAL n 1 246 PHE n 1 247 THR n 1 248 GLY n 1 249 GLU n 1 250 GLY n 1 251 ARG n 1 252 THR n 1 253 GLU n 1 254 ALA n 1 255 THR n 1 256 HIS n 1 257 ILE n 1 258 GLY n 1 259 GLY n 1 260 THR n 1 261 SER n 1 262 SER n 1 263 ASP n 1 264 GLU n 1 265 MET n 1 266 CYS n 1 267 ASN n 1 268 LEU n 1 269 TYR n 1 270 ILE n 1 271 MET n 1 272 TYR n 1 273 TYR n 1 274 MET n 1 275 GLU n 1 276 ALA n 1 277 LYS n 1 278 TYR n 1 279 ALA n 1 280 LEU n 1 281 SER n 1 282 PHE n 1 283 MET n 1 284 THR n 1 285 CYS n 1 286 THR n 1 287 LYS n 1 288 ASN n 1 289 VAL n 1 290 ALA n 1 291 PRO n 1 292 ASP n 1 293 MET n 1 294 PHE n 1 295 ARG n 1 296 THR n 1 297 ILE n 1 298 PRO n 1 299 ALA n 1 300 GLU n 1 301 ALA n 1 302 ASN n 1 303 ILE n 1 304 PRO n 1 305 ILE n 1 306 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene Pam _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Chinese hamster' _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus Cricetulus _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DG44 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type VIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCIS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AMD_RAT _struct_ref.pdbx_db_accession P14925 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDEG TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMS VDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDIL AARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIP ; _struct_ref.pdbx_align_begin 50 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YJK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 306 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14925 _struct_ref_seq.db_align_beg 50 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 355 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 50 _struct_ref_seq.pdbx_auth_seq_align_end 355 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1YJK _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50 _exptl_crystal.density_Matthews 2.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 4000, Magnesium Chloride, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-06-11 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 # _reflns.entry_id 1YJK _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.7 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 48.22 _reflns.number_all 19100 _reflns.number_obs 19100 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI 9.2 _reflns.B_iso_Wilson_estimate 33.4 _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.11 2.00 12780 2746 99.90 ? ? ? ? ? ? ? ? 1 1 2.24 2.11 12113 2610 99.87 ? ? ? ? ? ? ? ? 2 1 2.39 2.24 11295 2440 99.98 ? ? ? ? ? ? ? ? 3 1 2.58 2.39 10559 2310 99.91 ? ? ? ? ? ? ? ? 4 1 2.83 2.58 9637 2117 99.80 ? ? ? ? ? ? ? ? 5 1 3.16 2.83 8732 1941 100.00 ? ? ? ? ? ? ? ? 6 1 3.65 3.16 7422 1703 99.81 ? ? ? ? ? ? ? ? 7 1 4.47 3.65 5789 1435 98.15 ? ? ? ? ? ? ? ? 8 1 6.32 4.47 5341 1157 99.38 ? ? ? ? ? ? ? ? 9 1 48.22 6.32 2678 641 93.24 ? ? ? ? ? ? ? ? 10 1 # _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 48.220 _refine.ls_percent_reflns_obs 99.350 _refine.ls_number_reflns_obs 19055 _refine.ls_R_factor_all 0.199 _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.26 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 930 _refine.B_iso_mean 33.181 _refine.aniso_B[1][1] -0.420 _refine.aniso_B[2][2] 1.070 _refine.aniso_B[3][3] -0.650 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.overall_SU_R_Cruickshank_DPI 0.220 _refine.overall_SU_ML 0.135 _refine.overall_SU_B 9.600 _refine.solvent_model_details MASK _refine.entry_id 1YJK _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 19055 _refine.ls_R_factor_obs 0.199 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2369 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 2485 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 48.220 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.dev_ideal_target _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2473 0.027 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3348 2.111 1.941 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 301 7.596 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 105 34.894 22.952 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 381 17.073 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15 22.278 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 360 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1876 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 999 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1616 0.315 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 119 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 49 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 6 0.285 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1570 1.424 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2461 2.077 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1053 3.383 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 887 4.765 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.percent_reflns_obs 99.710 _refine_ls_shell.number_reflns_R_work 1332 _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1YJK _struct.title 'Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase (PHM) in a New Crystal Form' _struct.pdbx_descriptor 'Peptidyl-glycine alpha-amidating monooxygenase precursor (E.C.1.14.17.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YJK _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'MONOOXYGENASE, BIOACTIVE PEPTIDE ACTIVATION, ASCORBATE, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 78 ? GLY A 80 ? ASP A 127 GLY A 129 5 ? 3 HELX_P HELX_P2 2 LYS A 277 ? ALA A 279 ? LYS A 326 ALA A 328 5 ? 3 HELX_P HELX_P3 3 ALA A 290 ? ILE A 297 ? ALA A 339 ILE A 346 5 ? 8 HELX_P HELX_P4 4 PRO A 298 ? ILE A 303 ? PRO A 347 ILE A 352 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 81 A CYS 126 1_555 ? ? ? ? ? ? ? 2.053 ? disulf2 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 82 SG ? ? A CYS 114 A CYS 131 1_555 ? ? ? ? ? ? ? 2.106 ? disulf3 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 285 SG ? ? A CYS 227 A CYS 334 1_555 ? ? ? ? ? ? ? 2.012 ? disulf4 disulf ? ? A CYS 244 SG ? ? ? 1_555 A CYS 266 SG ? ? A CYS 293 A CYS 315 1_555 ? ? ? ? ? ? ? 1.988 ? metalc1 metalc ? ? A HIS 58 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 107 A CU 357 1_555 ? ? ? ? ? ? ? 2.031 ? metalc2 metalc ? ? A HIS 59 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 108 A CU 357 1_555 ? ? ? ? ? ? ? 2.020 ? metalc3 metalc ? ? A HIS 123 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 172 A CU 357 1_555 ? ? ? ? ? ? ? 2.022 ? metalc4 metalc ? ? C CU . CU ? ? ? 1_555 I HOH . O ? ? A CU 358 A HOH 885 1_555 ? ? ? ? ? ? ? 1.962 ? metalc5 metalc ? ? C CU . CU ? ? ? 1_555 A MET 265 SD ? ? A CU 358 A MET 314 1_555 ? ? ? ? ? ? ? 2.245 ? metalc6 metalc ? ? C CU . CU ? ? ? 1_555 A HIS 193 NE2 ? ? A CU 358 A HIS 242 1_555 ? ? ? ? ? ? ? 2.060 ? metalc7 metalc ? ? C CU . CU ? ? ? 1_555 A HIS 195 NE2 ? ? A CU 358 A HIS 244 1_555 ? ? ? ? ? ? ? 2.038 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 7 ? C ? 5 ? D ? 2 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 5 ? PRO A 7 ? VAL A 54 PRO A 56 A 2 ASP A 12 ? ARG A 18 ? ASP A 61 ARG A 67 A 3 GLY A 139 ? THR A 145 ? GLY A 188 THR A 194 A 4 ALA A 43 ? ARG A 51 ? ALA A 92 ARG A 100 A 5 VAL A 105 ? VAL A 109 ? VAL A 154 VAL A 158 A 6 LEU A 151 ? MET A 159 ? LEU A 200 MET A 208 A 7 ASN A 267 ? GLU A 275 ? ASN A 316 GLU A 324 A 8 MET A 185 ? HIS A 193 ? MET A 234 HIS A 242 A 9 TYR A 226 ? VAL A 234 ? TYR A 275 VAL A 283 B 1 VAL A 5 ? PRO A 7 ? VAL A 54 PRO A 56 B 2 ASP A 12 ? ARG A 18 ? ASP A 61 ARG A 67 B 3 GLY A 139 ? THR A 145 ? GLY A 188 THR A 194 B 4 ALA A 43 ? ARG A 51 ? ALA A 92 ARG A 100 B 5 VAL A 105 ? VAL A 109 ? VAL A 154 VAL A 158 B 6 LEU A 151 ? MET A 159 ? LEU A 200 MET A 208 B 7 PHE A 282 ? CYS A 285 ? PHE A 331 CYS A 334 C 1 TRP A 75 ? PHE A 76 ? TRP A 124 PHE A 125 C 2 THR A 29 ? ARG A 36 ? THR A 78 ARG A 85 C 3 TYR A 117 ? TYR A 124 ? TYR A 166 TYR A 173 C 4 VAL A 57 ? CYS A 65 ? VAL A 106 CYS A 114 C 5 ASN A 87 ? ALA A 93 ? ASN A 136 ALA A 142 D 1 VAL A 164 ? ILE A 165 ? VAL A 213 ILE A 214 D 2 THR A 255 ? HIS A 256 ? THR A 304 HIS A 305 E 1 VAL A 172 ? GLN A 179 ? VAL A 221 GLN A 228 E 2 ILE A 239 ? PHE A 246 ? ILE A 288 PHE A 295 E 3 GLY A 198 ? ARG A 207 ? GLY A 247 ARG A 256 E 4 GLN A 210 ? GLN A 217 ? GLN A 259 GLN A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 6 ? N THR A 55 O ALA A 14 ? O ALA A 63 A 2 3 N ILE A 17 ? N ILE A 66 O VAL A 140 ? O VAL A 189 A 3 4 O GLY A 139 ? O GLY A 188 N ARG A 51 ? N ARG A 100 A 4 5 N ALA A 43 ? N ALA A 92 O VAL A 109 ? O VAL A 158 A 5 6 N GLY A 106 ? N GLY A 155 O ALA A 153 ? O ALA A 202 A 6 7 N TYR A 156 ? N TYR A 205 O ILE A 270 ? O ILE A 319 A 7 8 O TYR A 269 ? O TYR A 318 N ARG A 191 ? N ARG A 240 A 8 9 N TYR A 190 ? N TYR A 239 O TYR A 226 ? O TYR A 275 B 1 2 N THR A 6 ? N THR A 55 O ALA A 14 ? O ALA A 63 B 2 3 N ILE A 17 ? N ILE A 66 O VAL A 140 ? O VAL A 189 B 3 4 O GLY A 139 ? O GLY A 188 N ARG A 51 ? N ARG A 100 B 4 5 N ALA A 43 ? N ALA A 92 O VAL A 109 ? O VAL A 158 B 5 6 N GLY A 106 ? N GLY A 155 O ALA A 153 ? O ALA A 202 B 6 7 N LEU A 157 ? N LEU A 206 O CYS A 285 ? O CYS A 334 C 1 2 O TRP A 75 ? O TRP A 124 N CYS A 32 ? N CYS A 81 C 2 3 N THR A 29 ? N THR A 78 O TYR A 124 ? O TYR A 173 C 3 4 O HIS A 123 ? O HIS A 172 N HIS A 59 ? N HIS A 108 C 4 5 N LEU A 62 ? N LEU A 111 O LEU A 89 ? O LEU A 138 D 1 2 N ILE A 165 ? N ILE A 214 O THR A 255 ? O THR A 304 E 1 2 N VAL A 172 ? N VAL A 221 O PHE A 246 ? O PHE A 295 E 2 3 O ILE A 239 ? O ILE A 288 N VAL A 206 ? N VAL A 255 E 3 4 N GLY A 203 ? N GLY A 252 O ILE A 214 ? O ILE A 263 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CU A 357' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU A 358' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 701' AC4 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 702' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 703' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 704' AC7 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 801' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 58 ? HIS A 107 . ? 1_555 ? 2 AC1 3 HIS A 59 ? HIS A 108 . ? 1_555 ? 3 AC1 3 HIS A 123 ? HIS A 172 . ? 1_555 ? 4 AC2 4 HIS A 193 ? HIS A 242 . ? 1_555 ? 5 AC2 4 HIS A 195 ? HIS A 244 . ? 1_555 ? 6 AC2 4 MET A 265 ? MET A 314 . ? 1_555 ? 7 AC2 4 HOH I . ? HOH A 885 . ? 1_555 ? 8 AC3 8 LEU A 89 ? LEU A 138 . ? 1_555 ? 9 AC3 8 TYR A 90 ? TYR A 139 . ? 1_555 ? 10 AC3 8 THR A 99 ? THR A 148 . ? 1_555 ? 11 AC3 8 LEU A 101 ? LEU A 150 . ? 1_555 ? 12 AC3 8 ALA A 189 ? ALA A 238 . ? 1_555 ? 13 AC3 8 MET A 271 ? MET A 320 . ? 1_555 ? 14 AC3 8 HOH I . ? HOH A 859 . ? 1_555 ? 15 AC3 8 HOH I . ? HOH A 884 . ? 1_555 ? 16 AC4 8 ASN A 87 ? ASN A 136 . ? 1_555 ? 17 AC4 8 LEU A 89 ? LEU A 138 . ? 1_555 ? 18 AC4 8 PHE A 107 ? PHE A 156 . ? 1_555 ? 19 AC4 8 ARG A 108 ? ARG A 157 . ? 1_555 ? 20 AC4 8 GLY A 114 ? GLY A 163 . ? 1_555 ? 21 AC4 8 SER A 115 ? SER A 164 . ? 1_555 ? 22 AC4 8 SER A 281 ? SER A 330 . ? 1_555 ? 23 AC4 8 HOH I . ? HOH A 803 . ? 1_555 ? 24 AC5 6 TYR A 156 ? TYR A 205 . ? 1_555 ? 25 AC5 6 CYS A 178 ? CYS A 227 . ? 1_555 ? 26 AC5 6 GLN A 179 ? GLN A 228 . ? 1_555 ? 27 AC5 6 TYR A 180 ? TYR A 229 . ? 1_555 ? 28 AC5 6 LYS A 181 ? LYS A 230 . ? 1_555 ? 29 AC5 6 THR A 284 ? THR A 333 . ? 1_555 ? 30 AC6 4 ASP A 12 ? ASP A 61 . ? 1_555 ? 31 AC6 4 ILE A 46 ? ILE A 95 . ? 1_555 ? 32 AC6 4 THR A 145 ? THR A 194 . ? 1_555 ? 33 AC6 4 GLN A 149 ? GLN A 198 . ? 1_555 ? 34 AC7 8 SER A 70 ? SER A 119 . ? 3_655 ? 35 AC7 8 TRP A 75 ? TRP A 124 . ? 3_655 ? 36 AC7 8 GLU A 79 ? GLU A 128 . ? 3_655 ? 37 AC7 8 GLU A 169 ? GLU A 218 . ? 4_556 ? 38 AC7 8 VAL A 171 ? VAL A 220 . ? 4_556 ? 39 AC7 8 VAL A 172 ? VAL A 221 . ? 4_556 ? 40 AC7 8 GLU A 229 ? GLU A 278 . ? 1_555 ? 41 AC7 8 HIS A 230 ? HIS A 279 . ? 1_555 ? # _atom_sites.entry_id 1YJK _atom_sites.fract_transf_matrix[1][1] 0.016907 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015075 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014303 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 50 50 THR THR A . n A 1 2 ILE 2 51 51 ILE ILE A . n A 1 3 GLY 3 52 52 GLY GLY A . n A 1 4 PRO 4 53 53 PRO PRO A . n A 1 5 VAL 5 54 54 VAL VAL A . n A 1 6 THR 6 55 55 THR THR A . n A 1 7 PRO 7 56 56 PRO PRO A . n A 1 8 LEU 8 57 57 LEU LEU A . n A 1 9 ASP 9 58 58 ASP ASP A . n A 1 10 ALA 10 59 59 ALA ALA A . n A 1 11 SER 11 60 60 SER SER A . n A 1 12 ASP 12 61 61 ASP ASP A . n A 1 13 PHE 13 62 62 PHE PHE A . n A 1 14 ALA 14 63 63 ALA ALA A . n A 1 15 LEU 15 64 64 LEU LEU A . n A 1 16 ASP 16 65 65 ASP ASP A . n A 1 17 ILE 17 66 66 ILE ILE A . n A 1 18 ARG 18 67 67 ARG ARG A . n A 1 19 MET 19 68 68 MET MET A . n A 1 20 PRO 20 69 69 PRO PRO A . n A 1 21 GLY 21 70 70 GLY GLY A . n A 1 22 VAL 22 71 71 VAL VAL A . n A 1 23 THR 23 72 72 THR THR A . n A 1 24 PRO 24 73 73 PRO PRO A . n A 1 25 LYS 25 74 74 LYS LYS A . n A 1 26 GLU 26 75 75 GLU GLU A . n A 1 27 SER 27 76 76 SER SER A . n A 1 28 ASP 28 77 77 ASP ASP A . n A 1 29 THR 29 78 78 THR THR A . n A 1 30 TYR 30 79 79 TYR TYR A . n A 1 31 PHE 31 80 80 PHE PHE A . n A 1 32 CYS 32 81 81 CYS CYS A . n A 1 33 MET 33 82 82 MET MET A . n A 1 34 SER 34 83 83 SER SER A . n A 1 35 MET 35 84 84 MET MET A . n A 1 36 ARG 36 85 85 ARG ARG A . n A 1 37 LEU 37 86 86 LEU LEU A . n A 1 38 PRO 38 87 87 PRO PRO A . n A 1 39 VAL 39 88 88 VAL VAL A . n A 1 40 ASP 40 89 89 ASP ASP A . n A 1 41 GLU 41 90 90 GLU GLU A . n A 1 42 GLU 42 91 91 GLU GLU A . n A 1 43 ALA 43 92 92 ALA ALA A . n A 1 44 PHE 44 93 93 PHE PHE A . n A 1 45 VAL 45 94 94 VAL VAL A . n A 1 46 ILE 46 95 95 ILE ILE A . n A 1 47 ASP 47 96 96 ASP ASP A . n A 1 48 PHE 48 97 97 PHE PHE A . n A 1 49 LYS 49 98 98 LYS LYS A . n A 1 50 PRO 50 99 99 PRO PRO A . n A 1 51 ARG 51 100 100 ARG ARG A . n A 1 52 ALA 52 101 101 ALA ALA A . n A 1 53 SER 53 102 102 SER SER A . n A 1 54 MET 54 103 103 MET MET A . n A 1 55 ASP 55 104 104 ASP ASP A . n A 1 56 THR 56 105 105 THR THR A . n A 1 57 VAL 57 106 106 VAL VAL A . n A 1 58 HIS 58 107 107 HIS HIS A . n A 1 59 HIS 59 108 108 HIS HIS A . n A 1 60 MET 60 109 109 MET MET A . n A 1 61 LEU 61 110 110 LEU LEU A . n A 1 62 LEU 62 111 111 LEU LEU A . n A 1 63 PHE 63 112 112 PHE PHE A . n A 1 64 GLY 64 113 113 GLY GLY A . n A 1 65 CYS 65 114 114 CYS CYS A . n A 1 66 ASN 66 115 115 ASN ASN A . n A 1 67 MET 67 116 116 MET MET A . n A 1 68 PRO 68 117 117 PRO PRO A . n A 1 69 SER 69 118 118 SER SER A . n A 1 70 SER 70 119 119 SER SER A . n A 1 71 THR 71 120 120 THR THR A . n A 1 72 GLY 72 121 121 GLY GLY A . n A 1 73 SER 73 122 122 SER SER A . n A 1 74 TYR 74 123 123 TYR TYR A . n A 1 75 TRP 75 124 124 TRP TRP A . n A 1 76 PHE 76 125 125 PHE PHE A . n A 1 77 CYS 77 126 126 CYS CYS A . n A 1 78 ASP 78 127 127 ASP ASP A . n A 1 79 GLU 79 128 128 GLU GLU A . n A 1 80 GLY 80 129 129 GLY GLY A . n A 1 81 THR 81 130 130 THR THR A . n A 1 82 CYS 82 131 131 CYS CYS A . n A 1 83 THR 83 132 132 THR THR A . n A 1 84 ASP 84 133 133 ASP ASP A . n A 1 85 LYS 85 134 134 LYS LYS A . n A 1 86 ALA 86 135 135 ALA ALA A . n A 1 87 ASN 87 136 136 ASN ASN A . n A 1 88 ILE 88 137 137 ILE ILE A . n A 1 89 LEU 89 138 138 LEU LEU A . n A 1 90 TYR 90 139 139 TYR TYR A . n A 1 91 ALA 91 140 140 ALA ALA A . n A 1 92 TRP 92 141 141 TRP TRP A . n A 1 93 ALA 93 142 142 ALA ALA A . n A 1 94 ARG 94 143 143 ARG ARG A . n A 1 95 ASN 95 144 144 ASN ASN A . n A 1 96 ALA 96 145 145 ALA ALA A . n A 1 97 PRO 97 146 146 PRO PRO A . n A 1 98 PRO 98 147 147 PRO PRO A . n A 1 99 THR 99 148 148 THR THR A . n A 1 100 ARG 100 149 149 ARG ARG A . n A 1 101 LEU 101 150 150 LEU LEU A . n A 1 102 PRO 102 151 151 PRO PRO A . n A 1 103 LYS 103 152 152 LYS LYS A . n A 1 104 GLY 104 153 153 GLY GLY A . n A 1 105 VAL 105 154 154 VAL VAL A . n A 1 106 GLY 106 155 155 GLY GLY A . n A 1 107 PHE 107 156 156 PHE PHE A . n A 1 108 ARG 108 157 157 ARG ARG A . n A 1 109 VAL 109 158 158 VAL VAL A . n A 1 110 GLY 110 159 159 GLY GLY A . n A 1 111 GLY 111 160 160 GLY GLY A . n A 1 112 GLU 112 161 161 GLU GLU A . n A 1 113 THR 113 162 162 THR THR A . n A 1 114 GLY 114 163 163 GLY GLY A . n A 1 115 SER 115 164 164 SER SER A . n A 1 116 LYS 116 165 165 LYS LYS A . n A 1 117 TYR 117 166 166 TYR TYR A . n A 1 118 PHE 118 167 167 PHE PHE A . n A 1 119 VAL 119 168 168 VAL VAL A . n A 1 120 LEU 120 169 169 LEU LEU A . n A 1 121 GLN 121 170 170 GLN GLN A . n A 1 122 VAL 122 171 171 VAL VAL A . n A 1 123 HIS 123 172 172 HIS HIS A . n A 1 124 TYR 124 173 173 TYR TYR A . n A 1 125 GLY 125 174 174 GLY GLY A . n A 1 126 ASP 126 175 175 ASP ASP A . n A 1 127 ILE 127 176 176 ILE ILE A . n A 1 128 SER 128 177 177 SER SER A . n A 1 129 ALA 129 178 178 ALA ALA A . n A 1 130 PHE 130 179 179 PHE PHE A . n A 1 131 ARG 131 180 180 ARG ARG A . n A 1 132 ASP 132 181 181 ASP ASP A . n A 1 133 ASN 133 182 182 ASN ASN A . n A 1 134 HIS 134 183 183 HIS HIS A . n A 1 135 LYS 135 184 184 LYS LYS A . n A 1 136 ASP 136 185 185 ASP ASP A . n A 1 137 CYS 137 186 186 CYS CYS A . n A 1 138 SER 138 187 187 SER SER A . n A 1 139 GLY 139 188 188 GLY GLY A . n A 1 140 VAL 140 189 189 VAL VAL A . n A 1 141 SER 141 190 190 SER SER A . n A 1 142 VAL 142 191 191 VAL VAL A . n A 1 143 HIS 143 192 192 HIS HIS A . n A 1 144 LEU 144 193 193 LEU LEU A . n A 1 145 THR 145 194 194 THR THR A . n A 1 146 ARG 146 195 195 ARG ARG A . n A 1 147 VAL 147 196 196 VAL VAL A . n A 1 148 PRO 148 197 197 PRO PRO A . n A 1 149 GLN 149 198 198 GLN GLN A . n A 1 150 PRO 150 199 199 PRO PRO A . n A 1 151 LEU 151 200 200 LEU LEU A . n A 1 152 ILE 152 201 201 ILE ILE A . n A 1 153 ALA 153 202 202 ALA ALA A . n A 1 154 GLY 154 203 203 GLY GLY A . n A 1 155 MET 155 204 204 MET MET A . n A 1 156 TYR 156 205 205 TYR TYR A . n A 1 157 LEU 157 206 206 LEU LEU A . n A 1 158 MET 158 207 207 MET MET A . n A 1 159 MET 159 208 208 MET MET A . n A 1 160 SER 160 209 209 SER SER A . n A 1 161 VAL 161 210 210 VAL VAL A . n A 1 162 ASP 162 211 211 ASP ASP A . n A 1 163 THR 163 212 212 THR THR A . n A 1 164 VAL 164 213 213 VAL VAL A . n A 1 165 ILE 165 214 214 ILE ILE A . n A 1 166 PRO 166 215 215 PRO PRO A . n A 1 167 PRO 167 216 216 PRO PRO A . n A 1 168 GLY 168 217 217 GLY GLY A . n A 1 169 GLU 169 218 218 GLU GLU A . n A 1 170 LYS 170 219 219 LYS LYS A . n A 1 171 VAL 171 220 220 VAL VAL A . n A 1 172 VAL 172 221 221 VAL VAL A . n A 1 173 ASN 173 222 222 ASN ASN A . n A 1 174 ALA 174 223 223 ALA ALA A . n A 1 175 ASP 175 224 224 ASP ASP A . n A 1 176 ILE 176 225 225 ILE ILE A . n A 1 177 SER 177 226 226 SER SER A . n A 1 178 CYS 178 227 227 CYS CYS A . n A 1 179 GLN 179 228 228 GLN GLN A . n A 1 180 TYR 180 229 229 TYR TYR A . n A 1 181 LYS 181 230 230 LYS LYS A . n A 1 182 MET 182 231 231 MET MET A . n A 1 183 TYR 183 232 232 TYR TYR A . n A 1 184 PRO 184 233 233 PRO PRO A . n A 1 185 MET 185 234 234 MET MET A . n A 1 186 HIS 186 235 235 HIS HIS A . n A 1 187 VAL 187 236 236 VAL VAL A . n A 1 188 PHE 188 237 237 PHE PHE A . n A 1 189 ALA 189 238 238 ALA ALA A . n A 1 190 TYR 190 239 239 TYR TYR A . n A 1 191 ARG 191 240 240 ARG ARG A . n A 1 192 VAL 192 241 241 VAL VAL A . n A 1 193 HIS 193 242 242 HIS HIS A . n A 1 194 THR 194 243 243 THR THR A . n A 1 195 HIS 195 244 244 HIS HIS A . n A 1 196 HIS 196 245 245 HIS HIS A . n A 1 197 LEU 197 246 246 LEU LEU A . n A 1 198 GLY 198 247 247 GLY GLY A . n A 1 199 LYS 199 248 248 LYS LYS A . n A 1 200 VAL 200 249 249 VAL VAL A . n A 1 201 VAL 201 250 250 VAL VAL A . n A 1 202 SER 202 251 251 SER SER A . n A 1 203 GLY 203 252 252 GLY GLY A . n A 1 204 TYR 204 253 253 TYR TYR A . n A 1 205 ARG 205 254 254 ARG ARG A . n A 1 206 VAL 206 255 255 VAL VAL A . n A 1 207 ARG 207 256 256 ARG ARG A . n A 1 208 ASN 208 257 257 ASN ASN A . n A 1 209 GLY 209 258 258 GLY GLY A . n A 1 210 GLN 210 259 259 GLN GLN A . n A 1 211 TRP 211 260 260 TRP TRP A . n A 1 212 THR 212 261 261 THR THR A . n A 1 213 LEU 213 262 262 LEU LEU A . n A 1 214 ILE 214 263 263 ILE ILE A . n A 1 215 GLY 215 264 264 GLY GLY A . n A 1 216 ARG 216 265 265 ARG ARG A . n A 1 217 GLN 217 266 266 GLN GLN A . n A 1 218 ASN 218 267 267 ASN ASN A . n A 1 219 PRO 219 268 268 PRO PRO A . n A 1 220 GLN 220 269 269 GLN GLN A . n A 1 221 LEU 221 270 270 LEU LEU A . n A 1 222 PRO 222 271 271 PRO PRO A . n A 1 223 GLN 223 272 272 GLN GLN A . n A 1 224 ALA 224 273 273 ALA ALA A . n A 1 225 PHE 225 274 274 PHE PHE A . n A 1 226 TYR 226 275 275 TYR TYR A . n A 1 227 PRO 227 276 276 PRO PRO A . n A 1 228 VAL 228 277 277 VAL VAL A . n A 1 229 GLU 229 278 278 GLU GLU A . n A 1 230 HIS 230 279 279 HIS HIS A . n A 1 231 PRO 231 280 280 PRO PRO A . n A 1 232 VAL 232 281 281 VAL VAL A . n A 1 233 ASP 233 282 282 ASP ASP A . n A 1 234 VAL 234 283 283 VAL VAL A . n A 1 235 THR 235 284 284 THR THR A . n A 1 236 PHE 236 285 285 PHE PHE A . n A 1 237 GLY 237 286 286 GLY GLY A . n A 1 238 ASP 238 287 287 ASP ASP A . n A 1 239 ILE 239 288 288 ILE ILE A . n A 1 240 LEU 240 289 289 LEU LEU A . n A 1 241 ALA 241 290 290 ALA ALA A . n A 1 242 ALA 242 291 291 ALA ALA A . n A 1 243 ARG 243 292 292 ARG ARG A . n A 1 244 CYS 244 293 293 CYS CYS A . n A 1 245 VAL 245 294 294 VAL VAL A . n A 1 246 PHE 246 295 295 PHE PHE A . n A 1 247 THR 247 296 296 THR THR A . n A 1 248 GLY 248 297 297 GLY GLY A . n A 1 249 GLU 249 298 298 GLU GLU A . n A 1 250 GLY 250 299 299 GLY GLY A . n A 1 251 ARG 251 300 300 ARG ARG A . n A 1 252 THR 252 301 301 THR THR A . n A 1 253 GLU 253 302 302 GLU GLU A . n A 1 254 ALA 254 303 303 ALA ALA A . n A 1 255 THR 255 304 304 THR THR A . n A 1 256 HIS 256 305 305 HIS HIS A . n A 1 257 ILE 257 306 306 ILE ILE A . n A 1 258 GLY 258 307 307 GLY GLY A . n A 1 259 GLY 259 308 ? ? ? A . n A 1 260 THR 260 309 ? ? ? A . n A 1 261 SER 261 310 ? ? ? A . n A 1 262 SER 262 311 311 SER SER A . n A 1 263 ASP 263 312 312 ASP ASP A . n A 1 264 GLU 264 313 313 GLU GLU A . n A 1 265 MET 265 314 314 MET MET A . n A 1 266 CYS 266 315 315 CYS CYS A . n A 1 267 ASN 267 316 316 ASN ASN A . n A 1 268 LEU 268 317 317 LEU LEU A . n A 1 269 TYR 269 318 318 TYR TYR A . n A 1 270 ILE 270 319 319 ILE ILE A . n A 1 271 MET 271 320 320 MET MET A . n A 1 272 TYR 272 321 321 TYR TYR A . n A 1 273 TYR 273 322 322 TYR TYR A . n A 1 274 MET 274 323 323 MET MET A . n A 1 275 GLU 275 324 324 GLU GLU A . n A 1 276 ALA 276 325 325 ALA ALA A . n A 1 277 LYS 277 326 326 LYS LYS A . n A 1 278 TYR 278 327 327 TYR TYR A . n A 1 279 ALA 279 328 328 ALA ALA A . n A 1 280 LEU 280 329 329 LEU LEU A . n A 1 281 SER 281 330 330 SER SER A . n A 1 282 PHE 282 331 331 PHE PHE A . n A 1 283 MET 283 332 332 MET MET A . n A 1 284 THR 284 333 333 THR THR A . n A 1 285 CYS 285 334 334 CYS CYS A . n A 1 286 THR 286 335 335 THR THR A . n A 1 287 LYS 287 336 336 LYS LYS A . n A 1 288 ASN 288 337 337 ASN ASN A . n A 1 289 VAL 289 338 338 VAL VAL A . n A 1 290 ALA 290 339 339 ALA ALA A . n A 1 291 PRO 291 340 340 PRO PRO A . n A 1 292 ASP 292 341 341 ASP ASP A . n A 1 293 MET 293 342 342 MET MET A . n A 1 294 PHE 294 343 343 PHE PHE A . n A 1 295 ARG 295 344 344 ARG ARG A . n A 1 296 THR 296 345 345 THR THR A . n A 1 297 ILE 297 346 346 ILE ILE A . n A 1 298 PRO 298 347 347 PRO PRO A . n A 1 299 ALA 299 348 348 ALA ALA A . n A 1 300 GLU 300 349 349 GLU GLU A . n A 1 301 ALA 301 350 350 ALA ALA A . n A 1 302 ASN 302 351 351 ASN ASN A . n A 1 303 ILE 303 352 352 ILE ILE A . n A 1 304 PRO 304 353 353 PRO PRO A . n A 1 305 ILE 305 354 354 ILE ILE A . n A 1 306 PRO 306 355 355 PRO PRO A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 58 ? A HIS 107 ? 1_555 CU ? B CU . ? A CU 357 ? 1_555 ND1 ? A HIS 59 ? A HIS 108 ? 1_555 139.7 ? 2 ND1 ? A HIS 58 ? A HIS 107 ? 1_555 CU ? B CU . ? A CU 357 ? 1_555 ND1 ? A HIS 123 ? A HIS 172 ? 1_555 104.4 ? 3 ND1 ? A HIS 59 ? A HIS 108 ? 1_555 CU ? B CU . ? A CU 357 ? 1_555 ND1 ? A HIS 123 ? A HIS 172 ? 1_555 109.4 ? 4 O ? I HOH . ? A HOH 885 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 SD ? A MET 265 ? A MET 314 ? 1_555 112.8 ? 5 O ? I HOH . ? A HOH 885 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 NE2 ? A HIS 193 ? A HIS 242 ? 1_555 93.7 ? 6 SD ? A MET 265 ? A MET 314 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 NE2 ? A HIS 193 ? A HIS 242 ? 1_555 115.5 ? 7 O ? I HOH . ? A HOH 885 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 NE2 ? A HIS 195 ? A HIS 244 ? 1_555 111.8 ? 8 SD ? A MET 265 ? A MET 314 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 NE2 ? A HIS 195 ? A HIS 244 ? 1_555 109.6 ? 9 NE2 ? A HIS 193 ? A HIS 242 ? 1_555 CU ? C CU . ? A CU 358 ? 1_555 NE2 ? A HIS 195 ? A HIS 244 ? 1_555 112.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' # _diffrn_reflns.pdbx_d_res_low 48.22 _diffrn_reflns.pdbx_d_res_high 2.00 _diffrn_reflns.number 86346 _diffrn_reflns.pdbx_Rmerge_I_obs 0.054 _diffrn_reflns.pdbx_redundancy 4.52 _diffrn_reflns.diffrn_id 1 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 28.7980 _pdbx_refine_tls.origin_y 7.0950 _pdbx_refine_tls.origin_z 20.2680 _pdbx_refine_tls.T[1][1] -0.1277 _pdbx_refine_tls.T[2][2] -0.1488 _pdbx_refine_tls.T[3][3] -0.1233 _pdbx_refine_tls.T[1][2] 0.0072 _pdbx_refine_tls.T[1][3] -0.0405 _pdbx_refine_tls.T[2][3] 0.0021 _pdbx_refine_tls.L[1][1] 1.4615 _pdbx_refine_tls.L[2][2] 0.9580 _pdbx_refine_tls.L[3][3] 3.0027 _pdbx_refine_tls.L[1][2] -0.3749 _pdbx_refine_tls.L[1][3] -0.5706 _pdbx_refine_tls.L[2][3] 0.4755 _pdbx_refine_tls.S[1][1] -0.0150 _pdbx_refine_tls.S[2][2] -0.0350 _pdbx_refine_tls.S[3][3] 0.0501 _pdbx_refine_tls.S[1][2] 0.1217 _pdbx_refine_tls.S[1][3] -0.1050 _pdbx_refine_tls.S[2][3] 0.1920 _pdbx_refine_tls.S[2][1] -0.1035 _pdbx_refine_tls.S[3][1] -0.0477 _pdbx_refine_tls.S[3][2] -0.3560 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 152 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 305 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 201 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 354 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA CCP4_3.2.5 5/04/2004 program 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 2 PDB_EXTRACT 1.501 'July 12, 2004' program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SD _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 MET _pdbx_validate_close_contact.auth_seq_id_1 84 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 874 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.93 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ASP 175 ? ? N A ILE 176 ? ? 1.480 1.336 0.144 0.023 Y 2 1 CB A PHE 179 ? ? CG A PHE 179 ? ? 1.612 1.509 0.103 0.017 N 3 1 CG A PHE 179 ? ? CD1 A PHE 179 ? ? 1.283 1.383 -0.100 0.015 N 4 1 CZ A PHE 179 ? ? CE2 A PHE 179 ? ? 1.505 1.369 0.136 0.019 N 5 1 C A GLY 217 ? ? O A GLY 217 ? ? 1.334 1.232 0.102 0.016 N 6 1 C A GLY 217 ? ? N A GLU 218 ? ? 1.574 1.336 0.238 0.023 Y 7 1 CG A GLU 218 ? ? CD A GLU 218 ? ? 1.624 1.515 0.109 0.015 N 8 1 CD A GLU 218 ? ? OE1 A GLU 218 ? ? 1.332 1.252 0.080 0.011 N 9 1 CD A GLU 218 ? ? OE2 A GLU 218 ? ? 1.334 1.252 0.082 0.011 N 10 1 CA A THR 301 ? ? CB A THR 301 ? ? 1.720 1.529 0.191 0.026 N 11 1 CB A THR 301 ? ? OG1 A THR 301 ? ? 1.814 1.428 0.386 0.020 N 12 1 C A THR 301 ? ? O A THR 301 ? ? 1.395 1.229 0.166 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 81 ? ? CB A CYS 81 ? ? SG A CYS 81 ? ? 120.90 114.20 6.70 1.10 N 2 1 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH1 A ARG 85 ? ? 124.61 120.30 4.31 0.50 N 3 1 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH2 A ARG 85 ? ? 113.80 120.30 -6.50 0.50 N 4 1 CB A ASP 89 ? ? CG A ASP 89 ? ? OD2 A ASP 89 ? ? 125.04 118.30 6.74 0.90 N 5 1 CB A ASP 104 ? ? CG A ASP 104 ? ? OD2 A ASP 104 ? ? 123.91 118.30 5.61 0.90 N 6 1 CB A ASP 127 ? ? CG A ASP 127 ? ? OD2 A ASP 127 ? ? 125.19 118.30 6.89 0.90 N 7 1 CB A ASP 133 ? ? CG A ASP 133 ? ? OD2 A ASP 133 ? ? 124.90 118.30 6.60 0.90 N 8 1 CD A LYS 152 ? ? CE A LYS 152 ? ? NZ A LYS 152 ? ? 126.14 111.70 14.44 2.30 N 9 1 O A ILE 176 ? ? C A ILE 176 ? ? N A SER 177 ? ? 133.77 122.70 11.07 1.60 Y 10 1 CB A PHE 179 ? ? CG A PHE 179 ? ? CD2 A PHE 179 ? ? 114.36 120.80 -6.44 0.70 N 11 1 CB A ASP 224 ? ? CG A ASP 224 ? ? OD2 A ASP 224 ? ? 124.51 118.30 6.21 0.90 N 12 1 CB A ASP 312 ? ? CG A ASP 312 ? ? OD2 A ASP 312 ? ? 124.25 118.30 5.95 0.90 N 13 1 CA A LEU 329 ? ? CB A LEU 329 ? ? CG A LEU 329 ? ? 131.08 115.30 15.78 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 58 ? ? 179.86 -162.60 2 1 SER A 102 ? ? -58.04 106.63 3 1 ASP A 104 ? ? -86.45 -78.55 4 1 ALA A 145 ? ? -158.35 80.93 5 1 LYS A 230 ? ? -142.98 31.55 6 1 HIS A 244 ? ? -98.34 -152.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 302 ? CG ? A GLU 253 CG 2 1 Y 1 A GLU 302 ? CD ? A GLU 253 CD 3 1 Y 1 A GLU 302 ? OE1 ? A GLU 253 OE1 4 1 Y 1 A GLU 302 ? OE2 ? A GLU 253 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 308 ? A GLY 259 2 1 Y 1 A THR 309 ? A THR 260 3 1 Y 1 A SER 310 ? A SER 261 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 GLYCEROL GOL 4 water HOH # loop_ _refln_sys_abs.index_h _refln_sys_abs.index_k _refln_sys_abs.index_l _refln_sys_abs.I _refln_sys_abs.sigmaI _refln_sys_abs.I_over_sigmaI 0 0 3 18.10 5.73 3.2 0 0 5 11.74 7.10 1.7 0 0 7 15.17 8.16 1.9 0 0 9 11.99 7.84 1.5 0 0 11 16.74 9.81 1.7 0 0 13 20.31 11.10 1.8 0 0 15 11.49 8.29 1.4 0 0 17 29.36 16.31 1.8 0 0 19 34.39 17.85 1.9 0 0 21 29.83 17.42 1.7 0 0 23 14.06 10.41 1.3 0 0 25 15.42 11.27 1.4 0 0 27 39.51 19.23 2.1 0 0 29 45.14 20.28 2.2 0 0 31 30.72 18.45 1.7 0 0 33 56.42 20.83 2.7 0 3 0 30.06 2.52 11.9 0 5 0 19.90 5.88 3.4 0 7 0 27.44 6.50 4.2 0 9 0 37.36 6.46 5.8 0 11 0 16.32 7.37 2.2 0 13 0 17.37 7.96 2.2 0 15 0 35.26 11.30 3.1 0 17 0 29.57 11.53 2.6 0 19 0 36.40 13.17 2.8 0 21 0 34.81 12.10 2.9 0 23 0 35.03 12.97 2.7 0 25 0 42.40 11.94 3.6 0 27 0 30.07 12.72 2.4 0 29 0 31.02 12.32 2.5 0 31 0 48.55 12.45 3.9 0 33 0 42.56 10.29 4.1 3 0 0 17.27 3.22 5.4 5 0 0 5.76 4.00 1.4 7 0 0 28.14 3.49 8.1 9 0 0 6.75 4.69 1.4 11 0 0 9.88 6.12 1.6 13 0 0 19.52 7.63 2.6 15 0 0 11.90 7.88 1.5 17 0 0 20.34 10.63 1.9 19 0 0 9.85 6.88 1.4 21 0 0 10.56 7.27 1.5 23 0 0 13.14 8.49 1.5 25 0 0 12.37 8.38 1.5 27 0 0 20.92 10.68 2.0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU 1 357 357 CU CU A . C 2 CU 1 358 358 CU 1CU A . D 3 GOL 1 701 701 GOL GOL A . E 3 GOL 1 702 702 GOL GOL A . F 3 GOL 1 703 703 GOL GOL A . G 3 GOL 1 704 704 GOL GOL A . H 3 GOL 1 801 801 GOL GOL A . I 4 HOH 1 802 1 HOH HOH A . I 4 HOH 2 803 2 HOH HOH A . I 4 HOH 3 804 3 HOH HOH A . I 4 HOH 4 805 4 HOH HOH A . I 4 HOH 5 806 6 HOH HOH A . I 4 HOH 6 807 7 HOH HOH A . I 4 HOH 7 808 8 HOH HOH A . I 4 HOH 8 809 9 HOH HOH A . I 4 HOH 9 810 10 HOH HOH A . I 4 HOH 10 811 11 HOH HOH A . I 4 HOH 11 812 12 HOH HOH A . I 4 HOH 12 813 13 HOH HOH A . I 4 HOH 13 814 14 HOH HOH A . I 4 HOH 14 815 15 HOH HOH A . I 4 HOH 15 816 16 HOH HOH A . I 4 HOH 16 817 17 HOH HOH A . I 4 HOH 17 818 18 HOH HOH A . I 4 HOH 18 819 19 HOH HOH A . I 4 HOH 19 820 20 HOH HOH A . I 4 HOH 20 821 22 HOH HOH A . I 4 HOH 21 822 23 HOH HOH A . I 4 HOH 22 823 24 HOH HOH A . I 4 HOH 23 824 25 HOH HOH A . I 4 HOH 24 825 26 HOH HOH A . I 4 HOH 25 826 27 HOH HOH A . I 4 HOH 26 827 28 HOH HOH A . I 4 HOH 27 828 29 HOH HOH A . I 4 HOH 28 829 30 HOH HOH A . I 4 HOH 29 830 31 HOH HOH A . I 4 HOH 30 831 34 HOH HOH A . I 4 HOH 31 832 35 HOH HOH A . I 4 HOH 32 833 36 HOH HOH A . I 4 HOH 33 834 37 HOH HOH A . I 4 HOH 34 835 38 HOH HOH A . I 4 HOH 35 836 39 HOH HOH A . I 4 HOH 36 837 40 HOH HOH A . I 4 HOH 37 838 41 HOH HOH A . I 4 HOH 38 839 43 HOH HOH A . I 4 HOH 39 840 44 HOH HOH A . I 4 HOH 40 841 45 HOH HOH A . I 4 HOH 41 842 46 HOH HOH A . I 4 HOH 42 843 48 HOH HOH A . I 4 HOH 43 844 49 HOH HOH A . I 4 HOH 44 845 50 HOH HOH A . I 4 HOH 45 846 51 HOH HOH A . I 4 HOH 46 847 52 HOH HOH A . I 4 HOH 47 848 53 HOH HOH A . I 4 HOH 48 849 54 HOH HOH A . I 4 HOH 49 850 55 HOH HOH A . I 4 HOH 50 851 56 HOH HOH A . I 4 HOH 51 852 57 HOH HOH A . I 4 HOH 52 853 58 HOH HOH A . I 4 HOH 53 854 59 HOH HOH A . I 4 HOH 54 855 60 HOH HOH A . I 4 HOH 55 856 61 HOH HOH A . I 4 HOH 56 857 62 HOH HOH A . I 4 HOH 57 858 64 HOH HOH A . I 4 HOH 58 859 65 HOH HOH A . I 4 HOH 59 860 68 HOH HOH A . I 4 HOH 60 861 69 HOH HOH A . I 4 HOH 61 862 70 HOH HOH A . I 4 HOH 62 863 71 HOH HOH A . I 4 HOH 63 864 72 HOH HOH A . I 4 HOH 64 865 73 HOH HOH A . I 4 HOH 65 866 75 HOH HOH A . I 4 HOH 66 867 76 HOH HOH A . I 4 HOH 67 868 77 HOH HOH A . I 4 HOH 68 869 78 HOH HOH A . I 4 HOH 69 870 79 HOH HOH A . I 4 HOH 70 871 81 HOH HOH A . I 4 HOH 71 872 82 HOH HOH A . I 4 HOH 72 873 83 HOH HOH A . I 4 HOH 73 874 85 HOH HOH A . I 4 HOH 74 875 86 HOH HOH A . I 4 HOH 75 876 87 HOH HOH A . I 4 HOH 76 877 88 HOH HOH A . I 4 HOH 77 878 89 HOH HOH A . I 4 HOH 78 879 92 HOH HOH A . I 4 HOH 79 880 95 HOH HOH A . I 4 HOH 80 881 96 HOH HOH A . I 4 HOH 81 882 97 HOH HOH A . I 4 HOH 82 883 98 HOH HOH A . I 4 HOH 83 884 99 HOH HOH A . I 4 HOH 84 885 358 HOH 1CU A . #