HEADER OXIDOREDUCTASE 15-JAN-05 1YJQ TITLE CRYSTAL STRUCTURE OF KETOPANTOATE REDUCTASE IN COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDROPANTOATE 2-REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KETOPANTOATE REDUCTASE, KPA REDUCTASE, KPR; COMPND 5 EC: 1.1.1.169; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PANE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS KETOPANTOATE, NADP+ DEPENDENT, PANTOTHENATE PATHWAY, SECONDARY KEYWDS 2 ALCOHOL DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.C.LOBLEY,A.CIULLI,H.M.WHITNEY,G.WILLIAMS,A.G.SMITH,C.ABELL, AUTHOR 2 T.L.BLUNDELL REVDAT 3 25-OCT-23 1YJQ 1 REMARK REVDAT 2 24-FEB-09 1YJQ 1 VERSN REVDAT 1 28-JUN-05 1YJQ 0 JRNL AUTH C.M.LOBLEY,A.CIULLI,H.M.WHITNEY,G.WILLIAMS,A.G.SMITH, JRNL AUTH 2 C.ABELL,T.L.BLUNDELL JRNL TITL THE CRYSTAL STRUCTURE OF ESCHERICHIA COLI KETOPANTOATE JRNL TITL 2 REDUCTASE WITH NADP+ BOUND. JRNL REF BIOCHEMISTRY V. 44 8930 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15966718 JRNL DOI 10.1021/BI0502036 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2412 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2169 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3296 ; 1.903 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5035 ; 0.929 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 6.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 504 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2635 ; 0.278 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1299 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1469 ; 1.387 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2378 ; 2.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 943 ; 3.484 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 918 ; 5.490 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SLIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 55.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 26.20 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1KS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 0.1M SODIUM ACETATE, 2MM REMARK 280 NADP+, 2MM KETOPANTOATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.41650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.40400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.06900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.40400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.41650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.06900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICALLY ACTIVE REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 294 REMARK 465 ILE A 295 REMARK 465 GLY A 296 REMARK 465 THR A 297 REMARK 465 GLY A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 ARG A 301 REMARK 465 PRO A 302 REMARK 465 TRP A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 HIS A 221 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 145 O HOH A 762 1.86 REMARK 500 OD1 ASN A 40 ND2 ASN A 50 1.91 REMARK 500 ND2 ASN A 168 O HOH A 813 1.95 REMARK 500 OD1 ASN A 168 O HOH A 747 2.16 REMARK 500 O HOH A 845 O HOH A 924 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 154 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 45.05 -96.28 REMARK 500 ASN A 168 33.08 -90.54 REMARK 500 ILE A 260 -97.57 -122.97 REMARK 500 TYR A 292 -161.45 -116.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KS9 RELATED DB: PDB REMARK 900 APO VERSION OF THE SAME PROTEIN DBREF 1YJQ A 1 303 UNP P0A9J4 PANE_ECOLI 1 303 SEQRES 1 A 303 MET LYS ILE THR VAL LEU GLY CYS GLY ALA LEU GLY GLN SEQRES 2 A 303 LEU TRP LEU THR ALA LEU CYS LYS GLN GLY HIS GLU VAL SEQRES 3 A 303 GLN GLY TRP LEU ARG VAL PRO GLN PRO TYR CYS SER VAL SEQRES 4 A 303 ASN LEU VAL GLU THR ASP GLY SER ILE PHE ASN GLU SER SEQRES 5 A 303 LEU THR ALA ASN ASP PRO ASP PHE LEU ALA THR SER ASP SEQRES 6 A 303 LEU LEU LEU VAL THR LEU LYS ALA TRP GLN VAL SER ASP SEQRES 7 A 303 ALA VAL LYS SER LEU ALA SER THR LEU PRO VAL THR THR SEQRES 8 A 303 PRO ILE LEU LEU ILE HIS ASN GLY MET GLY THR ILE GLU SEQRES 9 A 303 GLU LEU GLN ASN ILE GLN GLN PRO LEU LEU MET GLY THR SEQRES 10 A 303 THR THR HIS ALA ALA ARG ARG ASP GLY ASN VAL ILE ILE SEQRES 11 A 303 HIS VAL ALA ASN GLY ILE THR HIS ILE GLY PRO ALA ARG SEQRES 12 A 303 GLN GLN ASP GLY ASP TYR SER TYR LEU ALA ASP ILE LEU SEQRES 13 A 303 GLN THR VAL LEU PRO ASP VAL ALA TRP HIS ASN ASN ILE SEQRES 14 A 303 ARG ALA GLU LEU TRP ARG LYS LEU ALA VAL ASN CYS VAL SEQRES 15 A 303 ILE ASN PRO LEU THR ALA ILE TRP ASN CYS PRO ASN GLY SEQRES 16 A 303 GLU LEU ARG HIS HIS PRO GLN GLU ILE MET GLN ILE CYS SEQRES 17 A 303 GLU GLU VAL ALA ALA VAL ILE GLU ARG GLU GLY HIS HIS SEQRES 18 A 303 THR SER ALA GLU ASP LEU ARG ASP TYR VAL MET GLN VAL SEQRES 19 A 303 ILE ASP ALA THR ALA GLU ASN ILE SER SER MET LEU GLN SEQRES 20 A 303 ASP ILE ARG ALA LEU ARG HIS THR GLU ILE ASP TYR ILE SEQRES 21 A 303 ASN GLY PHE LEU LEU ARG ARG ALA ARG ALA HIS GLY ILE SEQRES 22 A 303 ALA VAL PRO GLU ASN THR ARG LEU PHE GLU MET VAL LYS SEQRES 23 A 303 ARG LYS GLU SER GLU TYR GLU ARG ILE GLY THR GLY LEU SEQRES 24 A 303 PRO ARG PRO TRP HET ACT A 701 4 HET ACT A 702 4 HET NAP A 501 48 HET MPD A 601 8 HETNAM ACT ACETATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 MPD C6 H14 O2 FORMUL 6 HOH *222(H2 O) HELIX 1 1 GLY A 9 GLN A 22 1 14 HELIX 2 2 ASP A 57 ALA A 62 1 6 HELIX 3 3 LYS A 72 TRP A 74 5 3 HELIX 4 4 GLN A 75 ALA A 84 1 10 HELIX 5 5 THR A 102 GLN A 107 5 6 HELIX 6 6 TYR A 149 THR A 158 1 10 HELIX 7 7 ASN A 168 ASN A 191 1 24 HELIX 8 8 PRO A 193 HIS A 199 5 7 HELIX 9 9 HIS A 200 GLU A 218 1 19 HELIX 10 10 SER A 223 THR A 238 1 16 HELIX 11 11 SER A 243 ALA A 251 1 9 HELIX 12 12 GLU A 256 TYR A 259 5 4 HELIX 13 13 ILE A 260 HIS A 271 1 12 HELIX 14 14 VAL A 275 GLU A 291 1 17 SHEET 1 A 7 GLU A 25 TRP A 29 0 SHEET 2 A 7 LYS A 2 LEU A 6 1 N VAL A 5 O GLN A 27 SHEET 3 A 7 LEU A 66 VAL A 69 1 O LEU A 68 N THR A 4 SHEET 4 A 7 ILE A 93 ILE A 96 1 O LEU A 94 N VAL A 69 SHEET 5 A 7 LEU A 113 THR A 118 1 O LEU A 114 N ILE A 93 SHEET 6 A 7 THR A 137 PRO A 141 -1 O GLY A 140 N MET A 115 SHEET 7 A 7 VAL A 163 TRP A 165 1 O ALA A 164 N THR A 137 SHEET 1 B 4 ILE A 48 THR A 54 0 SHEET 2 B 4 TYR A 36 VAL A 42 -1 N VAL A 39 O GLU A 51 SHEET 3 B 4 VAL A 128 ALA A 133 1 O ILE A 129 N ASN A 40 SHEET 4 B 4 ALA A 121 ASP A 125 -1 N ASP A 125 O VAL A 128 CISPEP 1 PRO A 161 ASP A 162 0 -9.28 SITE 1 AC1 1 HOH A 738 SITE 1 AC2 1 ASP A 148 SITE 1 AC3 27 GLY A 7 GLY A 9 ALA A 10 LEU A 11 SITE 2 AC3 27 TRP A 29 LEU A 30 ARG A 31 LEU A 71 SITE 3 AC3 27 LYS A 72 GLN A 75 ALA A 79 HIS A 97 SITE 4 AC3 27 ASN A 98 THR A 118 HIS A 120 ALA A 121 SITE 5 AC3 27 ALA A 122 GLU A 256 HOH A 715 HOH A 754 SITE 6 AC3 27 HOH A 779 HOH A 807 HOH A 831 HOH A 838 SITE 7 AC3 27 HOH A 854 HOH A 900 HOH A 917 SITE 1 AC4 5 CYS A 20 GLY A 23 GLU A 203 GLU A 277 SITE 2 AC4 5 HOH A 714 CRYST1 60.833 66.138 98.808 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010121 0.00000