HEADER ELECTRON TRANSPORT 17-JAN-05 1YKA TITLE SOLUTION STRUCTURE OF GRX4, A MONOTHIOL GLUTAREDOXIN FROM E. COLI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOTHIOL GLUTAREDOXIN YDHD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MONOTHIOL GLUTAREDOXIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YDHD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GRXA-GRXB-GRXC-; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS MIXED ALPHA/BETA FOLD, THIOREDOXIN FOLD, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.FLADVAD,M.BELLANDA,A.P.FERNANDES,C.ANDRESEN,S.MAMMI,A.HOLMGREN, AUTHOR 2 A.VLAMIS-GARDIKAS,M.SUNNERHAGEN REVDAT 4 02-MAR-22 1YKA 1 REMARK REVDAT 3 24-FEB-09 1YKA 1 VERSN REVDAT 2 19-JUL-05 1YKA 1 JRNL REVDAT 1 26-APR-05 1YKA 0 JRNL AUTH M.FLADVAD,M.BELLANDA,A.P.FERNANDES,S.MAMMI, JRNL AUTH 2 A.VLAMIS-GARDIKAS,A.HOLMGREN,M.SUNNERHAGEN JRNL TITL MOLECULAR MAPPING OF FUNCTIONALITIES IN THE SOLUTION JRNL TITL 2 STRUCTURE OF REDUCED GRX4, A MONOTHIOL GLUTAREDOXIN FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 280 24553 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15840565 JRNL DOI 10.1074/JBC.M500679200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROSA 3.6, CNS 1.1 REMARK 3 AUTHORS : GUNTERT (PROSA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 2703 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 77 J COUPLING DERIVED DIHEDRAL REMARK 3 ANGLE RESTRAINTS, 164 BACKBONE TORSION ANGLE RESTRAINTS DERIVED REMARK 3 FROM CHEMICAL SHIFTS REMARK 4 REMARK 4 1YKA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031611. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 125MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM GRX4 U,15N,15N-13C; 5MM REMARK 210 PHOPSPHATE, 125MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D TOCSY; HNCA; REMARK 210 DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.4, ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 LYS A 22 HB2 LEU A 53 1.20 REMARK 500 HD3 LYS A 101 H GLU A 115 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 46.40 -72.97 REMARK 500 1 THR A 4 -46.05 -168.03 REMARK 500 1 PRO A 28 32.29 -74.41 REMARK 500 1 SER A 29 46.52 -165.07 REMARK 500 1 GLU A 45 -153.58 -100.36 REMARK 500 1 ILE A 52 -34.58 -146.68 REMARK 500 1 ASN A 67 -54.18 -174.73 REMARK 500 1 THR A 70 -127.73 -143.06 REMARK 500 1 CYS A 84 -70.76 -78.01 REMARK 500 1 LYS A 108 -147.32 -100.38 REMARK 500 1 SER A 109 -155.62 -74.45 REMARK 500 1 PRO A 112 47.31 -95.59 REMARK 500 2 LEU A 27 112.59 -161.42 REMARK 500 2 PRO A 28 14.30 -69.56 REMARK 500 2 SER A 29 47.14 -163.21 REMARK 500 2 GLU A 45 -152.12 -128.25 REMARK 500 2 ILE A 52 -37.05 -151.63 REMARK 500 2 ASN A 67 -54.97 -175.89 REMARK 500 2 THR A 70 -128.08 -143.19 REMARK 500 2 LYS A 108 -158.27 -91.94 REMARK 500 2 ASP A 113 -104.96 -120.69 REMARK 500 3 SER A 2 -125.35 -79.12 REMARK 500 3 THR A 3 -24.18 74.17 REMARK 500 3 PRO A 28 26.30 -74.99 REMARK 500 3 SER A 29 49.86 -164.33 REMARK 500 3 CYS A 30 61.03 -67.06 REMARK 500 3 GLU A 45 -154.62 -97.37 REMARK 500 3 ILE A 52 -37.32 -149.68 REMARK 500 3 ASN A 67 -55.40 -174.99 REMARK 500 3 THR A 70 -124.38 -142.44 REMARK 500 3 SER A 109 -140.10 -84.73 REMARK 500 3 GLU A 110 45.55 -72.77 REMARK 500 3 ASP A 113 -124.95 -84.01 REMARK 500 4 SER A 2 -41.42 70.82 REMARK 500 4 MET A 21 -154.05 -148.10 REMARK 500 4 LEU A 27 116.67 -160.46 REMARK 500 4 PRO A 28 31.43 -72.94 REMARK 500 4 SER A 29 51.82 -169.61 REMARK 500 4 GLU A 45 -154.68 -99.95 REMARK 500 4 ILE A 52 -33.93 -143.50 REMARK 500 4 ASN A 67 -55.02 -174.82 REMARK 500 4 THR A 70 -128.13 -143.07 REMARK 500 4 LYS A 108 -149.91 -89.58 REMARK 500 4 SER A 109 -148.36 -82.84 REMARK 500 4 PRO A 112 49.81 -99.70 REMARK 500 5 THR A 3 -121.48 53.09 REMARK 500 5 THR A 4 132.50 75.18 REMARK 500 5 PRO A 28 20.37 -71.99 REMARK 500 5 SER A 29 52.35 -161.97 REMARK 500 5 GLU A 45 -151.85 -115.09 REMARK 500 REMARK 500 THIS ENTRY HAS 229 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 18 ALA A 60 10.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YKA A 1 115 UNP P0AC69 YDHD_ECOLI 1 115 SEQRES 1 A 115 MET SER THR THR ILE GLU LYS ILE GLN ARG GLN ILE ALA SEQRES 2 A 115 GLU ASN PRO ILE LEU LEU TYR MET LYS GLY SER PRO LYS SEQRES 3 A 115 LEU PRO SER CYS GLY PHE SER ALA GLN ALA VAL GLN ALA SEQRES 4 A 115 LEU ALA ALA CYS GLY GLU ARG PHE ALA TYR VAL ASP ILE SEQRES 5 A 115 LEU GLN ASN PRO ASP ILE ARG ALA GLU LEU PRO LYS TYR SEQRES 6 A 115 ALA ASN TRP PRO THR PHE PRO GLN LEU TRP VAL ASP GLY SEQRES 7 A 115 GLU LEU VAL GLY GLY CYS ASP ILE VAL ILE GLU MET TYR SEQRES 8 A 115 GLN ARG GLY GLU LEU GLN GLN LEU ILE LYS GLU THR ALA SEQRES 9 A 115 ALA LYS TYR LYS SER GLU GLU PRO ASP ALA GLU HELIX 1 1 THR A 4 ASN A 15 1 12 HELIX 2 2 PHE A 32 GLY A 44 1 13 HELIX 3 3 ASN A 55 ASN A 67 1 13 HELIX 4 4 CYS A 84 GLY A 94 1 11 HELIX 5 5 GLY A 94 LYS A 108 1 15 SHEET 1 A 4 ALA A 48 ASP A 51 0 SHEET 2 A 4 ILE A 17 MET A 21 1 N LEU A 19 O VAL A 50 SHEET 3 A 4 GLN A 73 VAL A 76 -1 O TRP A 75 N LEU A 18 SHEET 4 A 4 GLU A 79 LEU A 80 -1 O GLU A 79 N VAL A 76 CISPEP 1 PHE A 71 PRO A 72 1 -0.84 CISPEP 2 PHE A 71 PRO A 72 2 -1.78 CISPEP 3 PHE A 71 PRO A 72 3 -1.30 CISPEP 4 PHE A 71 PRO A 72 4 -0.89 CISPEP 5 PHE A 71 PRO A 72 5 -0.69 CISPEP 6 PHE A 71 PRO A 72 6 -2.66 CISPEP 7 PHE A 71 PRO A 72 7 -1.06 CISPEP 8 PHE A 71 PRO A 72 8 -1.88 CISPEP 9 PHE A 71 PRO A 72 9 -1.79 CISPEP 10 PHE A 71 PRO A 72 10 -2.06 CISPEP 11 PHE A 71 PRO A 72 11 -1.19 CISPEP 12 PHE A 71 PRO A 72 12 -0.42 CISPEP 13 PHE A 71 PRO A 72 13 -0.91 CISPEP 14 PHE A 71 PRO A 72 14 -2.03 CISPEP 15 PHE A 71 PRO A 72 15 -1.12 CISPEP 16 PHE A 71 PRO A 72 16 -0.64 CISPEP 17 PHE A 71 PRO A 72 17 -1.50 CISPEP 18 PHE A 71 PRO A 72 18 -1.24 CISPEP 19 PHE A 71 PRO A 72 19 -1.31 CISPEP 20 PHE A 71 PRO A 72 20 -1.42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1