HEADER LYASE 17-JAN-05 1YKD TITLE CRYSTAL STRUCTURE OF THE TANDEM GAF DOMAINS FROM A CYANOBACTERIAL TITLE 2 ADENYLYL CYCLASE: NOVEL MODES OF LIGAND-BINDING AND DIMERIZATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA SP.; SOURCE 3 ORGANISM_TAXID: 1167; SOURCE 4 GENE: CYAB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: E. COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CLONED INTO QIAGEN PLASMID PQE-60 AT THE SOURCE 10 NCOI-BAMH1 SITES KEYWDS GAF DOMAIN, BOUND CYCLIC AMP LIGAND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.MARTINEZ,S.BRUDER,A.SCHULTZ,N.ZHENG,J.E.SCHULTZ,J.A.BEAVO, AUTHOR 2 J.U.LINDER REVDAT 5 14-FEB-24 1YKD 1 REMARK SEQADV REVDAT 4 13-JUL-11 1YKD 1 VERSN REVDAT 3 24-FEB-09 1YKD 1 VERSN REVDAT 2 08-MAR-05 1YKD 1 JRNL REVDAT 1 22-FEB-05 1YKD 0 JRNL AUTH S.E.MARTINEZ,S.BRUDER,A.SCHULTZ,N.ZHENG,J.E.SCHULTZ, JRNL AUTH 2 J.A.BEAVO,J.U.LINDER JRNL TITL CRYSTAL STRUCTURE OF THE TANDEM GAF DOMAINS FROM A JRNL TITL 2 CYANOBACTERIAL ADENYLYL CYCLASE: MODES OF LIGAND BINDING AND JRNL TITL 3 DIMERIZATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 3082 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15708973 JRNL DOI 10.1073/PNAS.0409913102 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 66116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4125 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : -0.88000 REMARK 3 B13 (A**2) : 1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6251 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5599 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8479 ; 1.069 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13090 ; 0.731 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 5.545 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 961 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6861 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1176 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1167 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6298 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3607 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 372 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3811 ; 1.274 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6153 ; 2.375 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2440 ; 2.996 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2326 ; 4.885 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9333 13.0073 6.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.0332 REMARK 3 T33: 0.0453 T12: -0.0006 REMARK 3 T13: 0.0668 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.6171 L22: 4.5336 REMARK 3 L33: 6.7814 L12: -0.9512 REMARK 3 L13: 0.0531 L23: 5.2072 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.0488 S13: 0.0351 REMARK 3 S21: -0.6012 S22: -0.0070 S23: -0.1590 REMARK 3 S31: -0.9417 S32: 0.0995 S33: -0.1201 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 246 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7063 -20.6493 -2.1343 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1579 REMARK 3 T33: 0.1265 T12: 0.0145 REMARK 3 T13: -0.0294 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.6559 L22: 1.0592 REMARK 3 L33: 0.2307 L12: -0.3086 REMARK 3 L13: -0.2890 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0608 S13: -0.0802 REMARK 3 S21: -0.0524 S22: -0.0292 S23: -0.0028 REMARK 3 S31: -0.0352 S32: -0.0210 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 247 A 440 REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3429 -8.5651 22.2102 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1494 REMARK 3 T33: 0.1246 T12: -0.0182 REMARK 3 T13: -0.0127 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.6154 L22: 0.5689 REMARK 3 L33: 0.2450 L12: 0.5513 REMARK 3 L13: 0.0784 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.0799 S13: 0.0075 REMARK 3 S21: -0.0004 S22: 0.0016 S23: 0.0127 REMARK 3 S31: -0.0234 S32: -0.0228 S33: -0.1051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6401 2.2374 6.2135 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1241 REMARK 3 T33: 0.1109 T12: 0.0269 REMARK 3 T13: -0.0065 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.9651 L22: 1.5027 REMARK 3 L33: 2.1272 L12: -1.0146 REMARK 3 L13: -1.2337 L23: 2.1391 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.0476 S13: -0.1467 REMARK 3 S21: -0.1005 S22: -0.1035 S23: 0.1387 REMARK 3 S31: -0.1791 S32: -0.0492 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 246 REMARK 3 RESIDUE RANGE : B 503 B 503 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5421 22.2506 36.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1402 REMARK 3 T33: 0.1229 T12: 0.0337 REMARK 3 T13: -0.0035 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.1315 L22: 0.4922 REMARK 3 L33: 0.8989 L12: 0.3885 REMARK 3 L13: -0.0872 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.0104 S13: -0.0454 REMARK 3 S21: 0.0099 S22: -0.0711 S23: 0.0019 REMARK 3 S31: 0.0079 S32: 0.0938 S33: 0.1302 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 247 B 441 REMARK 3 RESIDUE RANGE : B 504 B 504 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4572 18.7940 -2.1043 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1088 REMARK 3 T33: 0.1455 T12: 0.0280 REMARK 3 T13: 0.0236 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 0.8688 REMARK 3 L33: 0.3974 L12: 0.4797 REMARK 3 L13: 0.1189 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: 0.0858 S13: 0.0318 REMARK 3 S21: 0.1272 S22: -0.0529 S23: -0.0340 REMARK 3 S31: 0.0846 S32: 0.0502 S33: 0.1274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : SI (220), SINGLE CRYSTAL, REMARK 200 CYLINDRICALLY BENT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS PROPANE, REMARK 280 GLYCEROL, TRIS, MGCL2, BETAMERCAPTOETHANOL, 3',5' CYCLIC REMARK 280 ADENOSINE MONOPHOSPHATE, PH 8.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 441 REMARK 465 GLN A 442 REMARK 465 GLN A 443 REMARK 465 GLU A 444 REMARK 465 GLN A 445 REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 ARG A 448 REMARK 465 SER A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 GLU B 124 REMARK 465 GLY B 125 REMARK 465 ASP B 126 REMARK 465 ARG B 127 REMARK 465 GLN B 442 REMARK 465 GLN B 443 REMARK 465 GLU B 444 REMARK 465 GLN B 445 REMARK 465 GLY B 446 REMARK 465 SER B 447 REMARK 465 ARG B 448 REMARK 465 SER B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 561 O HOH A 686 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 199 82.42 60.57 REMARK 500 ASP A 271 178.44 -58.67 REMARK 500 ASN A 312 -50.96 -173.95 REMARK 500 GLN A 376 19.42 59.90 REMARK 500 ASN A 386 83.07 66.82 REMARK 500 ASN B 199 77.77 63.10 REMARK 500 ASP B 300 -53.18 177.71 REMARK 500 ASP B 311 91.02 -68.43 REMARK 500 ASN B 312 -49.03 168.29 REMARK 500 ASN B 373 -135.75 -91.70 REMARK 500 ASP B 375 41.74 -96.64 REMARK 500 ASN B 386 83.83 65.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 504 DBREF 1YKD A 58 445 UNP P94182 P94182_9NOST 58 445 DBREF 1YKD B 58 445 UNP P94182 P94182_9NOST 58 445 SEQADV 1YKD GLY A 446 UNP P94182 CLONING ARTIFACT SEQADV 1YKD SER A 447 UNP P94182 CLONING ARTIFACT SEQADV 1YKD ARG A 448 UNP P94182 CLONING ARTIFACT SEQADV 1YKD SER A 449 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 450 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 451 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 452 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 453 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 454 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS A 455 UNP P94182 CLONING ARTIFACT SEQADV 1YKD GLY B 446 UNP P94182 CLONING ARTIFACT SEQADV 1YKD SER B 447 UNP P94182 CLONING ARTIFACT SEQADV 1YKD ARG B 448 UNP P94182 CLONING ARTIFACT SEQADV 1YKD SER B 449 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 450 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 451 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 452 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 453 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 454 UNP P94182 CLONING ARTIFACT SEQADV 1YKD HIS B 455 UNP P94182 CLONING ARTIFACT SEQRES 1 A 398 VAL THR GLU VAL GLU GLN LYS LEU GLN ILE VAL HIS GLN SEQRES 2 A 398 THR LEU SER MET LEU ASP SER HIS GLY PHE GLU ASN ILE SEQRES 3 A 398 LEU GLN GLU MET LEU GLN SER ILE THR LEU LYS THR GLY SEQRES 4 A 398 GLU LEU LEU GLY ALA ASP ARG THR THR ILE PHE LEU LEU SEQRES 5 A 398 ASP GLU GLU LYS GLN GLU LEU TRP SER ILE VAL ALA ALA SEQRES 6 A 398 GLY GLU GLY ASP ARG SER LEU GLU ILE ARG ILE PRO ALA SEQRES 7 A 398 ASP LYS GLY ILE ALA GLY GLU VAL ALA THR PHE LYS GLN SEQRES 8 A 398 VAL VAL ASN ILE PRO PHE ASP PHE TYR HIS ASP PRO ARG SEQRES 9 A 398 SER ILE PHE ALA GLN LYS GLN GLU LYS ILE THR GLY TYR SEQRES 10 A 398 ARG THR TYR THR MET LEU ALA LEU PRO LEU LEU SER GLU SEQRES 11 A 398 GLN GLY ARG LEU VAL ALA VAL VAL GLN LEU LEU ASN LYS SEQRES 12 A 398 LEU LYS PRO TYR SER PRO PRO ASP ALA LEU LEU ALA GLU SEQRES 13 A 398 ARG ILE ASP ASN GLN GLY PHE THR SER ALA ASP GLU GLN SEQRES 14 A 398 LEU PHE GLN GLU PHE ALA PRO SER ILE ARG LEU ILE LEU SEQRES 15 A 398 GLU SER SER ARG SER PHE TYR ILE ALA THR GLN LYS GLN SEQRES 16 A 398 ARG ALA ALA ALA ALA MET MET LYS ALA VAL LYS SER LEU SEQRES 17 A 398 SER GLN SER SER LEU ASP LEU GLU ASP THR LEU LYS ARG SEQRES 18 A 398 VAL MET ASP GLU ALA LYS GLU LEU MET ASN ALA ASP ARG SEQRES 19 A 398 SER THR LEU TRP LEU ILE ASP ARG ASP ARG HIS GLU LEU SEQRES 20 A 398 TRP THR LYS ILE THR GLN ASP ASN GLY SER THR LYS GLU SEQRES 21 A 398 LEU ARG VAL PRO ILE GLY LYS GLY PHE ALA GLY ILE VAL SEQRES 22 A 398 ALA ALA SER GLY GLN LYS LEU ASN ILE PRO PHE ASP LEU SEQRES 23 A 398 TYR ASP HIS PRO ASP SER ALA THR ALA LYS GLN ILE ASP SEQRES 24 A 398 GLN GLN ASN GLY TYR ARG THR CYS SER LEU LEU CYS MET SEQRES 25 A 398 PRO VAL PHE ASN GLY ASP GLN GLU LEU ILE GLY VAL THR SEQRES 26 A 398 GLN LEU VAL ASN LYS LYS LYS THR GLY GLU PHE PRO PRO SEQRES 27 A 398 TYR ASN PRO GLU THR TRP PRO ILE ALA PRO GLU CYS PHE SEQRES 28 A 398 GLN ALA SER PHE ASP ARG ASN ASP GLU GLU PHE MET GLU SEQRES 29 A 398 ALA PHE ASN ILE GLN ALA GLY VAL ALA LEU GLN ASN ALA SEQRES 30 A 398 GLN LEU PHE ALA THR VAL LYS GLN GLN GLU GLN GLY SER SEQRES 31 A 398 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 398 VAL THR GLU VAL GLU GLN LYS LEU GLN ILE VAL HIS GLN SEQRES 2 B 398 THR LEU SER MET LEU ASP SER HIS GLY PHE GLU ASN ILE SEQRES 3 B 398 LEU GLN GLU MET LEU GLN SER ILE THR LEU LYS THR GLY SEQRES 4 B 398 GLU LEU LEU GLY ALA ASP ARG THR THR ILE PHE LEU LEU SEQRES 5 B 398 ASP GLU GLU LYS GLN GLU LEU TRP SER ILE VAL ALA ALA SEQRES 6 B 398 GLY GLU GLY ASP ARG SER LEU GLU ILE ARG ILE PRO ALA SEQRES 7 B 398 ASP LYS GLY ILE ALA GLY GLU VAL ALA THR PHE LYS GLN SEQRES 8 B 398 VAL VAL ASN ILE PRO PHE ASP PHE TYR HIS ASP PRO ARG SEQRES 9 B 398 SER ILE PHE ALA GLN LYS GLN GLU LYS ILE THR GLY TYR SEQRES 10 B 398 ARG THR TYR THR MET LEU ALA LEU PRO LEU LEU SER GLU SEQRES 11 B 398 GLN GLY ARG LEU VAL ALA VAL VAL GLN LEU LEU ASN LYS SEQRES 12 B 398 LEU LYS PRO TYR SER PRO PRO ASP ALA LEU LEU ALA GLU SEQRES 13 B 398 ARG ILE ASP ASN GLN GLY PHE THR SER ALA ASP GLU GLN SEQRES 14 B 398 LEU PHE GLN GLU PHE ALA PRO SER ILE ARG LEU ILE LEU SEQRES 15 B 398 GLU SER SER ARG SER PHE TYR ILE ALA THR GLN LYS GLN SEQRES 16 B 398 ARG ALA ALA ALA ALA MET MET LYS ALA VAL LYS SER LEU SEQRES 17 B 398 SER GLN SER SER LEU ASP LEU GLU ASP THR LEU LYS ARG SEQRES 18 B 398 VAL MET ASP GLU ALA LYS GLU LEU MET ASN ALA ASP ARG SEQRES 19 B 398 SER THR LEU TRP LEU ILE ASP ARG ASP ARG HIS GLU LEU SEQRES 20 B 398 TRP THR LYS ILE THR GLN ASP ASN GLY SER THR LYS GLU SEQRES 21 B 398 LEU ARG VAL PRO ILE GLY LYS GLY PHE ALA GLY ILE VAL SEQRES 22 B 398 ALA ALA SER GLY GLN LYS LEU ASN ILE PRO PHE ASP LEU SEQRES 23 B 398 TYR ASP HIS PRO ASP SER ALA THR ALA LYS GLN ILE ASP SEQRES 24 B 398 GLN GLN ASN GLY TYR ARG THR CYS SER LEU LEU CYS MET SEQRES 25 B 398 PRO VAL PHE ASN GLY ASP GLN GLU LEU ILE GLY VAL THR SEQRES 26 B 398 GLN LEU VAL ASN LYS LYS LYS THR GLY GLU PHE PRO PRO SEQRES 27 B 398 TYR ASN PRO GLU THR TRP PRO ILE ALA PRO GLU CYS PHE SEQRES 28 B 398 GLN ALA SER PHE ASP ARG ASN ASP GLU GLU PHE MET GLU SEQRES 29 B 398 ALA PHE ASN ILE GLN ALA GLY VAL ALA LEU GLN ASN ALA SEQRES 30 B 398 GLN LEU PHE ALA THR VAL LYS GLN GLN GLU GLN GLY SER SEQRES 31 B 398 ARG SER HIS HIS HIS HIS HIS HIS HET CMP A 501 22 HET CMP A 502 22 HET CMP B 503 22 HET CMP B 504 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 3 CMP 4(C10 H12 N5 O6 P) FORMUL 7 HOH *475(H2 O) HELIX 1 1 GLU A 60 ASP A 76 1 17 HELIX 2 2 GLY A 79 GLY A 100 1 22 HELIX 3 3 GLY A 123 ARG A 127 5 5 HELIX 4 4 LYS A 137 LYS A 147 1 11 HELIX 5 5 ASP A 155 ARG A 161 5 7 HELIX 6 6 SER A 162 GLY A 173 1 12 HELIX 7 7 LEU A 210 ILE A 215 1 6 HELIX 8 8 THR A 221 PHE A 228 1 8 HELIX 9 9 PHE A 231 SER A 268 1 38 HELIX 10 10 ASP A 271 MET A 287 1 17 HELIX 11 11 LYS A 324 GLY A 334 1 11 HELIX 12 12 ASP A 342 HIS A 346 5 5 HELIX 13 13 SER A 349 GLY A 360 1 12 HELIX 14 14 ASN A 397 TRP A 401 5 5 HELIX 15 15 PRO A 405 GLN A 409 5 5 HELIX 16 16 ASP A 413 VAL A 440 1 28 HELIX 17 17 GLU B 60 ASP B 76 1 17 HELIX 18 18 GLY B 79 GLY B 100 1 22 HELIX 19 19 LYS B 137 LYS B 147 1 11 HELIX 20 20 ASP B 155 ARG B 161 5 7 HELIX 21 21 SER B 162 GLY B 173 1 12 HELIX 22 22 LEU B 210 ILE B 215 1 6 HELIX 23 23 THR B 221 GLN B 229 1 9 HELIX 24 24 PHE B 231 GLN B 267 1 37 HELIX 25 25 ASP B 271 MET B 287 1 17 HELIX 26 26 LYS B 324 GLY B 334 1 11 HELIX 27 27 ASP B 342 HIS B 346 5 5 HELIX 28 28 SER B 349 GLY B 360 1 12 HELIX 29 29 ASN B 397 TRP B 401 5 5 HELIX 30 30 PRO B 405 GLN B 409 5 5 HELIX 31 31 ASP B 413 LYS B 441 1 29 SHEET 1 A 6 ARG A 132 PRO A 134 0 SHEET 2 A 6 GLU A 115 ALA A 121 -1 N LEU A 116 O ILE A 133 SHEET 3 A 6 ALA A 101 ASP A 110 -1 N LEU A 108 O TRP A 117 SHEET 4 A 6 LEU A 191 LYS A 200 -1 O LEU A 198 N ARG A 103 SHEET 5 A 6 MET A 179 LEU A 185 -1 N LEU A 180 O LEU A 197 SHEET 6 A 6 VAL A 150 ILE A 152 -1 N ILE A 152 O MET A 179 SHEET 1 B 6 THR A 315 PRO A 321 0 SHEET 2 B 6 GLU A 303 THR A 309 -1 N LEU A 304 O VAL A 320 SHEET 3 B 6 ALA A 289 ASP A 298 -1 N ASP A 298 O GLU A 303 SHEET 4 B 6 LEU A 378 LYS A 387 -1 O VAL A 381 N TRP A 295 SHEET 5 B 6 LEU A 366 PHE A 372 -1 N VAL A 371 O ILE A 379 SHEET 6 B 6 LEU A 337 ILE A 339 -1 N LEU A 337 O CYS A 368 SHEET 1 C 6 ARG B 132 PRO B 134 0 SHEET 2 C 6 GLU B 115 ALA B 122 -1 N LEU B 116 O ILE B 133 SHEET 3 C 6 ALA B 101 ASP B 110 -1 N THR B 104 O ALA B 122 SHEET 4 C 6 LEU B 191 LYS B 200 -1 O LEU B 198 N ARG B 103 SHEET 5 C 6 MET B 179 LEU B 185 -1 N LEU B 180 O LEU B 197 SHEET 6 C 6 VAL B 150 ILE B 152 -1 N VAL B 150 O ALA B 181 SHEET 1 D 6 THR B 315 PRO B 321 0 SHEET 2 D 6 GLU B 303 THR B 309 -1 N LEU B 304 O VAL B 320 SHEET 3 D 6 ALA B 289 ASP B 298 -1 N LEU B 296 O TRP B 305 SHEET 4 D 6 LEU B 378 LYS B 387 -1 O VAL B 381 N TRP B 295 SHEET 5 D 6 LEU B 366 PHE B 372 -1 N VAL B 371 O GLY B 380 SHEET 6 D 6 LEU B 337 ILE B 339 -1 N LEU B 337 O CYS B 368 CISPEP 1 PHE A 154 ASP A 155 0 3.18 CISPEP 2 PHE A 341 ASP A 342 0 -6.42 CISPEP 3 TRP A 401 PRO A 402 0 6.69 CISPEP 4 PHE B 154 ASP B 155 0 1.45 CISPEP 5 PHE B 341 ASP B 342 0 -10.15 CISPEP 6 TRP B 401 PRO B 402 0 4.44 SITE 1 AC1 15 ARG A 103 THR A 105 ALA A 122 ILE A 131 SITE 2 AC1 15 GLY A 138 ILE A 139 ALA A 140 PHE A 164 SITE 3 AC1 15 THR A 176 MET A 179 GLN A 196 LEU A 198 SITE 4 AC1 15 HOH A 517 HOH A 536 HOH A 599 SITE 1 AC2 16 ARG A 291 THR A 293 ILE A 308 GLY A 325 SITE 2 AC2 16 PHE A 326 ALA A 327 THR A 351 ALA A 352 SITE 3 AC2 16 ILE A 355 THR A 363 GLN A 383 VAL A 385 SITE 4 AC2 16 HOH A 504 HOH A 507 HOH A 595 HOH A 676 SITE 1 AC3 14 ARG B 103 THR B 105 ILE B 131 GLY B 138 SITE 2 AC3 14 ILE B 139 ALA B 140 PHE B 164 THR B 176 SITE 3 AC3 14 MET B 179 GLN B 196 LEU B 198 HOH B 514 SITE 4 AC3 14 HOH B 516 HOH B 687 SITE 1 AC4 14 ARG B 291 THR B 293 ILE B 308 GLY B 325 SITE 2 AC4 14 PHE B 326 ALA B 327 THR B 351 ALA B 352 SITE 3 AC4 14 ASP B 356 THR B 363 GLN B 383 HOH B 507 SITE 4 AC4 14 HOH B 525 HOH B 589 CRYST1 61.958 66.265 70.212 103.57 96.56 115.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016140 0.007577 0.004469 0.00000 SCALE2 0.000000 0.016671 0.005530 0.00000 SCALE3 0.000000 0.000000 0.015105 0.00000