HEADER OXIDOREDUCTASE 19-JAN-05 1YL6 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE TITLE 2 REDUCTASE (RV2773C) (CRYSTAL FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHPR; COMPND 5 EC: 1.3.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DAPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LYSINE BIOSYNTHESIS, DIHYDRODIPICOLINATE, REDUCTASE, NADH, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,G.KEFALA,M.S.WEISS,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 6 23-AUG-23 1YL6 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 1YL6 1 REMARK REVDAT 4 13-JUL-11 1YL6 1 VERSN REVDAT 3 26-JAN-10 1YL6 1 JRNL REVDAT 2 24-FEB-09 1YL6 1 VERSN REVDAT 1 17-JAN-06 1YL6 0 JRNL AUTH R.JANOWSKI,G.KEFALA,M.S.WEISS JRNL TITL THE STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE (DAPB) FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS IN THREE CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 61 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20057050 JRNL DOI 10.1107/S0907444909043960 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.16000 REMARK 3 B22 (A**2) : 1.52000 REMARK 3 B33 (A**2) : -6.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.330 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3692 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5038 ; 1.689 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;40.649 ;23.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;18.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1695 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2563 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3908 ; 1.367 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 3.915 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1130 ; 6.644 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 40 A 242 2 REMARK 3 1 B 40 B 242 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 812 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 710 ; 0.35 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 812 ; 0.40 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 710 ; 1.15 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 RESIDUE RANGE : A 218 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 63.0214 64.9711 4.6897 REMARK 3 T TENSOR REMARK 3 T11: -0.1661 T22: 0.1264 REMARK 3 T33: -0.1415 T12: -0.1688 REMARK 3 T13: -0.0728 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.7206 L22: 3.8409 REMARK 3 L33: 7.0423 L12: 0.6284 REMARK 3 L13: -0.0347 L23: -1.3026 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: 0.0371 S13: 0.1740 REMARK 3 S21: 0.0511 S22: -0.0839 S23: -0.1135 REMARK 3 S31: -0.3089 S32: 0.9997 S33: 0.1877 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5480 47.8004 27.1461 REMARK 3 T TENSOR REMARK 3 T11: -0.3442 T22: -0.0607 REMARK 3 T33: -0.0444 T12: 0.1170 REMARK 3 T13: -0.0201 T23: -0.1320 REMARK 3 L TENSOR REMARK 3 L11: 2.9075 L22: 4.1281 REMARK 3 L33: 2.9535 L12: 1.4363 REMARK 3 L13: 0.1891 L23: 0.1063 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.2878 S13: -0.1834 REMARK 3 S21: 0.0168 S22: 0.3328 S23: -0.6743 REMARK 3 S31: -0.1774 S32: 0.7125 S33: -0.4168 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 105 REMARK 3 RESIDUE RANGE : B 218 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0405 72.1763 52.5786 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: -0.3059 REMARK 3 T33: -0.2121 T12: 0.0699 REMARK 3 T13: 0.0025 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.5993 L22: 5.2191 REMARK 3 L33: 8.2294 L12: -0.6096 REMARK 3 L13: 1.4562 L23: -0.3044 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: -0.1044 S13: -0.0880 REMARK 3 S21: 0.0339 S22: -0.1621 S23: -0.0412 REMARK 3 S31: -1.4034 S32: -0.2714 S33: 0.2770 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9995 57.8844 30.0157 REMARK 3 T TENSOR REMARK 3 T11: -0.1772 T22: -0.2659 REMARK 3 T33: 0.0057 T12: 0.1851 REMARK 3 T13: 0.1263 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 3.8116 L22: 3.3834 REMARK 3 L33: 3.7643 L12: 1.4552 REMARK 3 L13: 0.2636 L23: -0.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: 0.1248 S13: 0.5977 REMARK 3 S21: 0.3078 S22: 0.0256 S23: 0.6469 REMARK 3 S31: -0.6766 S32: -0.3061 S33: -0.2054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT REMARK 4 REMARK 4 1YL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111, SI220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 31.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1P9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL, 24 % PEG 3350, 140 MM REMARK 280 MGCL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.56500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY (TETRAMER) IS REMARK 300 GENERATED BY THE TWO FOLD AXIS: 1/2, 1/2, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.13000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 137.72 -173.67 REMARK 500 ALA A 34 109.02 -38.35 REMARK 500 HIS A 54 139.62 -29.83 REMARK 500 THR A 77 -149.13 -100.36 REMARK 500 LYS A 156 91.86 -60.54 REMARK 500 ASP A 163 109.62 -172.63 REMARK 500 ASP A 178 51.26 38.56 REMARK 500 VAL A 191 -98.04 -113.27 REMARK 500 ASP A 243 73.45 36.08 REMARK 500 HIS B 54 139.86 -30.18 REMARK 500 THR B 77 -151.53 -95.64 REMARK 500 LYS B 156 93.20 -67.70 REMARK 500 ASP B 163 110.64 -174.47 REMARK 500 VAL B 191 -90.31 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 246 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 20 O REMARK 620 2 ALA A 21 O 63.3 REMARK 620 3 ALA A 23 O 74.1 74.9 REMARK 620 4 LEU A 26 O 81.7 140.0 77.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 246 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 20 O REMARK 620 2 ALA B 21 O 65.9 REMARK 620 3 ALA B 23 O 83.9 90.1 REMARK 620 4 LEU B 26 O 89.8 155.7 86.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YL5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE REMARK 900 REDUCTASE (RV2773C) (CRYSTAL FORM A) REMARK 900 RELATED ID: 1YL7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDRODIPICOLINATE REMARK 900 REDUCTASE (RV2773C) IN COMPLEX WITH NADH (CRYSTAL FORM C) REMARK 900 RELATED ID: RV2773C RELATED DB: TARGETDB DBREF 1YL6 A 2 245 UNP P72024 DAPB_MYCTU 2 245 DBREF 1YL6 B 2 245 UNP P72024 DAPB_MYCTU 2 245 SEQADV 1YL6 ALA A 1 UNP P72024 CLONING ARTIFACT SEQADV 1YL6 ALA B 1 UNP P72024 CLONING ARTIFACT SEQRES 1 A 245 ALA ARG VAL GLY VAL LEU GLY ALA LYS GLY LYS VAL GLY SEQRES 2 A 245 ALA THR MET VAL ARG ALA VAL ALA ALA ALA ASP ASP LEU SEQRES 3 A 245 THR LEU SER ALA GLU LEU ASP ALA GLY ASP PRO LEU SER SEQRES 4 A 245 LEU LEU THR ASP GLY ASN THR GLU VAL VAL ILE ASP PHE SEQRES 5 A 245 THR HIS PRO ASP VAL VAL MET GLY ASN LEU GLU PHE LEU SEQRES 6 A 245 ILE ASP ASN GLY ILE HIS ALA VAL VAL GLY THR THR GLY SEQRES 7 A 245 PHE THR ALA GLU ARG PHE GLN GLN VAL GLU SER TRP LEU SEQRES 8 A 245 VAL ALA LYS PRO ASN THR SER VAL LEU ILE ALA PRO ASN SEQRES 9 A 245 PHE ALA ILE GLY ALA VAL LEU SER MET HIS PHE ALA LYS SEQRES 10 A 245 GLN ALA ALA ARG PHE PHE ASP SER ALA GLU VAL ILE GLU SEQRES 11 A 245 LEU HIS HIS PRO HIS LYS ALA ASP ALA PRO SER GLY THR SEQRES 12 A 245 ALA ALA ARG THR ALA LYS LEU ILE ALA GLU ALA ARG LYS SEQRES 13 A 245 GLY LEU PRO PRO ASN PRO ASP ALA THR SER THR SER LEU SEQRES 14 A 245 PRO GLY ALA ARG GLY ALA ASP VAL ASP GLY ILE PRO VAL SEQRES 15 A 245 HIS ALA VAL ARG LEU ALA GLY LEU VAL ALA HIS GLN GLU SEQRES 16 A 245 VAL LEU PHE GLY THR GLU GLY GLU THR LEU THR ILE ARG SEQRES 17 A 245 HIS ASP SER LEU ASP ARG THR SER PHE VAL PRO GLY VAL SEQRES 18 A 245 LEU LEU ALA VAL ARG ARG ILE ALA GLU ARG PRO GLY LEU SEQRES 19 A 245 THR VAL GLY LEU GLU PRO LEU LEU ASP LEU HIS SEQRES 1 B 245 ALA ARG VAL GLY VAL LEU GLY ALA LYS GLY LYS VAL GLY SEQRES 2 B 245 ALA THR MET VAL ARG ALA VAL ALA ALA ALA ASP ASP LEU SEQRES 3 B 245 THR LEU SER ALA GLU LEU ASP ALA GLY ASP PRO LEU SER SEQRES 4 B 245 LEU LEU THR ASP GLY ASN THR GLU VAL VAL ILE ASP PHE SEQRES 5 B 245 THR HIS PRO ASP VAL VAL MET GLY ASN LEU GLU PHE LEU SEQRES 6 B 245 ILE ASP ASN GLY ILE HIS ALA VAL VAL GLY THR THR GLY SEQRES 7 B 245 PHE THR ALA GLU ARG PHE GLN GLN VAL GLU SER TRP LEU SEQRES 8 B 245 VAL ALA LYS PRO ASN THR SER VAL LEU ILE ALA PRO ASN SEQRES 9 B 245 PHE ALA ILE GLY ALA VAL LEU SER MET HIS PHE ALA LYS SEQRES 10 B 245 GLN ALA ALA ARG PHE PHE ASP SER ALA GLU VAL ILE GLU SEQRES 11 B 245 LEU HIS HIS PRO HIS LYS ALA ASP ALA PRO SER GLY THR SEQRES 12 B 245 ALA ALA ARG THR ALA LYS LEU ILE ALA GLU ALA ARG LYS SEQRES 13 B 245 GLY LEU PRO PRO ASN PRO ASP ALA THR SER THR SER LEU SEQRES 14 B 245 PRO GLY ALA ARG GLY ALA ASP VAL ASP GLY ILE PRO VAL SEQRES 15 B 245 HIS ALA VAL ARG LEU ALA GLY LEU VAL ALA HIS GLN GLU SEQRES 16 B 245 VAL LEU PHE GLY THR GLU GLY GLU THR LEU THR ILE ARG SEQRES 17 B 245 HIS ASP SER LEU ASP ARG THR SER PHE VAL PRO GLY VAL SEQRES 18 B 245 LEU LEU ALA VAL ARG ARG ILE ALA GLU ARG PRO GLY LEU SEQRES 19 B 245 THR VAL GLY LEU GLU PRO LEU LEU ASP LEU HIS HET MG A 246 1 HET MG B 246 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *2(H2 O) HELIX 1 1 GLY A 10 ALA A 23 1 14 HELIX 2 2 SER A 39 GLY A 44 1 6 HELIX 3 3 HIS A 54 ASN A 68 1 15 HELIX 4 4 THR A 80 LYS A 94 1 15 HELIX 5 5 ALA A 106 ALA A 120 1 15 HELIX 6 6 ARG A 121 PHE A 123 5 3 HELIX 7 7 SER A 141 ARG A 155 1 15 HELIX 8 8 PHE A 217 ILE A 228 1 12 HELIX 9 9 ALA A 229 ARG A 231 5 3 HELIX 10 10 LEU A 238 ASP A 243 5 6 HELIX 11 11 GLY B 10 ALA B 23 1 14 HELIX 12 12 LEU B 38 GLY B 44 1 7 HELIX 13 13 HIS B 54 ASN B 68 1 15 HELIX 14 14 THR B 80 LYS B 94 1 15 HELIX 15 15 ALA B 106 ALA B 120 1 15 HELIX 16 16 ARG B 121 PHE B 123 5 3 HELIX 17 17 SER B 141 ARG B 155 1 15 HELIX 18 18 PHE B 217 ILE B 228 1 12 HELIX 19 19 ALA B 229 ARG B 231 5 3 HELIX 20 20 LEU B 238 ASP B 243 5 6 SHEET 1 A 6 THR A 27 GLU A 31 0 SHEET 2 A 6 ARG A 2 VAL A 5 1 N VAL A 3 O SER A 29 SHEET 3 A 6 VAL A 48 ASP A 51 1 O VAL A 48 N GLY A 4 SHEET 4 A 6 HIS A 71 VAL A 74 1 O VAL A 73 N ASP A 51 SHEET 5 A 6 SER A 98 ILE A 101 1 O LEU A 100 N ALA A 72 SHEET 6 A 6 GLY A 233 VAL A 236 1 O THR A 235 N VAL A 99 SHEET 1 B 9 ALA A 175 VAL A 177 0 SHEET 2 B 9 ILE A 180 ARG A 186 -1 O VAL A 182 N ALA A 175 SHEET 3 B 9 SER A 125 HIS A 132 1 N GLU A 130 O VAL A 185 SHEET 4 B 9 ALA A 192 THR A 200 -1 O GLU A 195 N ILE A 129 SHEET 5 B 9 GLU A 203 SER A 211 -1 O SER A 211 N ALA A 192 SHEET 6 B 9 GLU B 203 SER B 211 -1 O ASP B 210 N THR A 204 SHEET 7 B 9 ALA B 192 THR B 200 -1 N ALA B 192 O SER B 211 SHEET 8 B 9 SER B 125 HIS B 132 -1 N ILE B 129 O GLU B 195 SHEET 9 B 9 VAL B 182 ARG B 186 1 O VAL B 185 N GLU B 130 SHEET 1 C 6 THR B 27 LEU B 32 0 SHEET 2 C 6 ARG B 2 LEU B 6 1 N VAL B 3 O SER B 29 SHEET 3 C 6 VAL B 48 ASP B 51 1 O VAL B 48 N GLY B 4 SHEET 4 C 6 HIS B 71 VAL B 74 1 O VAL B 73 N VAL B 49 SHEET 5 C 6 SER B 98 ILE B 101 1 O LEU B 100 N VAL B 74 SHEET 6 C 6 GLY B 233 VAL B 236 1 O THR B 235 N VAL B 99 LINK O VAL A 20 MG MG A 246 1555 1555 2.93 LINK O ALA A 21 MG MG A 246 1555 1555 2.80 LINK O ALA A 23 MG MG A 246 1555 1555 2.48 LINK O LEU A 26 MG MG A 246 1555 1555 2.20 LINK O VAL B 20 MG MG B 246 1555 1555 2.74 LINK O ALA B 21 MG MG B 246 1555 1555 3.00 LINK O ALA B 23 MG MG B 246 1555 1555 2.62 LINK O LEU B 26 MG MG B 246 1555 1555 2.17 CISPEP 1 ALA A 139 PRO A 140 0 6.07 CISPEP 2 ALA B 139 PRO B 140 0 4.53 SITE 1 AC1 4 VAL A 20 ALA A 21 ALA A 23 LEU A 26 SITE 1 AC2 4 VAL B 20 ALA B 21 ALA B 23 LEU B 26 CRYST1 87.130 89.460 77.520 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012900 0.00000