data_1YLB # _entry.id 1YLB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YLB pdb_00001ylb 10.2210/pdb1ylb/pdb RCSB RCSB031647 ? ? WWPDB D_1000031647 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YLB _pdbx_database_status.recvd_initial_deposition_date 2005-01-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Musiani, F.' 1 'Dikiy, A.' 2 'Semenov, A.Y.' 3 'Ciurli, S.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the Intermolecular Complex between Plastocyanin and Cytochrome f from Spinach.' J.Biol.Chem. 280 18833 18841 2005 JBCHA3 US 0021-9258 0071 ? 15691836 10.1074/jbc.M412760200 1 'Crystal Structure of Spinach Plastocyanin at 1.7A Resolution' 'Protein Sci.' 7 2099 2105 1998 PRCIEI US 0961-8368 0795 ? 9792096 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Musiani, F.' 1 ? primary 'Dikiy, A.' 2 ? primary 'Semenov, A.Y.' 3 ? primary 'Ciurli, S.' 4 ? 1 'Xue, Y.' 5 ? 1 'Okvist, M.' 6 ? 1 'Hansson, O.' 7 ? 1 'Young, S.' 8 ? # _cell.entry_id 1YLB _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YLB _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Plastocyanin, chloroplast' 10420.557 1 ? ? 'Reduced spinach plastocyanin (Residues 70-168)' ? 2 non-polymer syn 'COPPER (I) ION' 63.546 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY KFYCSPHQGAGMVGKVTVN ; _entity_poly.pdbx_seq_one_letter_code_can ;VEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY KFYCSPHQGAGMVGKVTVN ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLU n 1 3 VAL n 1 4 LEU n 1 5 LEU n 1 6 GLY n 1 7 GLY n 1 8 GLY n 1 9 ASP n 1 10 GLY n 1 11 SER n 1 12 LEU n 1 13 ALA n 1 14 PHE n 1 15 LEU n 1 16 PRO n 1 17 GLY n 1 18 ASP n 1 19 PHE n 1 20 SER n 1 21 VAL n 1 22 ALA n 1 23 SER n 1 24 GLY n 1 25 GLU n 1 26 GLU n 1 27 ILE n 1 28 VAL n 1 29 PHE n 1 30 LYS n 1 31 ASN n 1 32 ASN n 1 33 ALA n 1 34 GLY n 1 35 PHE n 1 36 PRO n 1 37 HIS n 1 38 ASN n 1 39 VAL n 1 40 VAL n 1 41 PHE n 1 42 ASP n 1 43 GLU n 1 44 ASP n 1 45 GLU n 1 46 ILE n 1 47 PRO n 1 48 SER n 1 49 GLY n 1 50 VAL n 1 51 ASP n 1 52 ALA n 1 53 ALA n 1 54 LYS n 1 55 ILE n 1 56 SER n 1 57 MET n 1 58 SER n 1 59 GLU n 1 60 GLU n 1 61 ASP n 1 62 LEU n 1 63 LEU n 1 64 ASN n 1 65 ALA n 1 66 PRO n 1 67 GLY n 1 68 GLU n 1 69 THR n 1 70 TYR n 1 71 LYS n 1 72 VAL n 1 73 THR n 1 74 LEU n 1 75 THR n 1 76 GLU n 1 77 LYS n 1 78 GLY n 1 79 THR n 1 80 TYR n 1 81 LYS n 1 82 PHE n 1 83 TYR n 1 84 CYS n 1 85 SER n 1 86 PRO n 1 87 HIS n 1 88 GLN n 1 89 GLY n 1 90 ALA n 1 91 GLY n 1 92 MET n 1 93 VAL n 1 94 GLY n 1 95 LYS n 1 96 VAL n 1 97 THR n 1 98 VAL n 1 99 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name spinach _entity_src_nat.pdbx_organism_scientific 'Spinacia oleracea' _entity_src_nat.pdbx_ncbi_taxonomy_id 3562 _entity_src_nat.genus Spinacia _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLAS_SPIOL _struct_ref.pdbx_db_accession P00289 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY KFYCSPHQGAGMVGKVTVN ; _struct_ref.pdbx_align_begin 70 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YLB _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 99 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00289 _struct_ref_seq.db_align_beg 70 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU1 non-polymer . 'COPPER (I) ION' ? 'Cu 1' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50 mM sodium phosphate' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1-2 mM wild type reduced spinach plastocyanin, 50mM sodium phosphate buffer' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 800 ? 2 AVANCE Bruker 500 ? # _pdbx_nmr_refine.entry_id 1YLB _pdbx_nmr_refine.method ;torsion angle dynamics + restrained energy minimization + restrained molecular dynamics ; _pdbx_nmr_refine.details ;The structure was calculated using dipolar (NOESY) derived constraints supplemented with phi and psi dihedral angle constraints as well as with hydrogen bond constraints. The mean structure of the DYANA family was initially subjected to restrained energy minimization in vacuo and subsequently to restrained molecular dynamics in explicit water medium. For further experimental details please refer to the publication. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1YLB _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1YLB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ;the structure was obtained subjecting the mean structure of the dyana family to the restrained energy minimization and subsequent restrained molecular dynamics ; # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 1.3 Bruker 1 'structure solution' DYANA 1.5 'Guntert, P., Mumenthaler, C., and Wuthrich, K.' 2 refinement Amber 6.0 ;Case, D. A., Pearlman, D. A., Caldwell, J. W., Cheatham III, T. E., Ross, W. S., Simmerling, C. L., Darden, T. A., Merz, K. M., Stanton, R. V., Cheng, A. L., Vincent, J. J., Crowley, M., Tsui, V., Radmer, R. J., Duan, Y., Pitera, J., Massova, I., Seibel, G. L., Singh, U. C., Weiner, P. K., and Kollman, P. A. ; 3 'data analysis' XEASY 1.3 'Bartels, C., Xia, T., Billeter, M., Guntert, P., and Wuthrich, K.' 4 # _exptl.entry_id 1YLB _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1YLB _struct.title 'NMR solution structure of the reduced spinach plastocyanin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YLB _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'plastocyanin, copper(+)-containing, electron-transfer, spinach, photosynthesis, blue-copper protein, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 51 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 55 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 51 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 55 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 37 ND1 ? ? ? 1_555 B CU1 . CU ? ? B HIS 37 B CU1 100 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc2 metalc ? ? A CYS 84 SG ? ? ? 1_555 B CU1 . CU ? ? B CYS 84 B CU1 100 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc3 metalc ? ? A HIS 87 ND1 ? ? ? 1_555 B CU1 . CU ? ? B HIS 87 B CU1 100 1_555 ? ? ? ? ? ? ? 2.087 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 15 A . ? LEU 15 B PRO 16 A ? PRO 16 B 1 -3.88 2 PHE 35 A . ? PHE 35 B PRO 36 A ? PRO 36 B 1 -3.61 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 14 ? LEU A 15 ? PHE B 14 LEU B 15 A 2 GLU A 2 ? LEU A 5 ? GLU B 2 LEU B 5 A 3 GLU A 26 ? ASN A 31 ? GLU B 26 ASN B 31 A 4 THR A 69 ? THR A 73 ? THR B 69 THR B 73 B 1 VAL A 40 ? PHE A 41 ? VAL B 40 PHE B 41 B 2 THR A 79 ? TYR A 83 ? THR B 79 TYR B 83 B 3 VAL A 93 ? THR A 97 ? VAL B 93 THR B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 15 ? O LEU B 15 N LEU A 4 ? N LEU B 4 A 2 3 N LEU A 5 ? N LEU B 5 O LYS A 30 ? O LYS B 30 A 3 4 N ILE A 27 ? N ILE B 27 O VAL A 72 ? O VAL B 72 B 1 2 N VAL A 40 ? N VAL B 40 O TYR A 83 ? O TYR B 83 B 2 3 N TYR A 80 ? N TYR B 80 O VAL A 96 ? O VAL B 96 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CU1 _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CU1 B 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 37 ? HIS B 37 . ? 1_555 ? 2 AC1 3 CYS A 84 ? CYS B 84 . ? 1_555 ? 3 AC1 3 HIS A 87 ? HIS B 87 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YLB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YLB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL B . n A 1 2 GLU 2 2 2 GLU GLU B . n A 1 3 VAL 3 3 3 VAL VAL B . n A 1 4 LEU 4 4 4 LEU LEU B . n A 1 5 LEU 5 5 5 LEU LEU B . n A 1 6 GLY 6 6 6 GLY GLY B . n A 1 7 GLY 7 7 7 GLY GLY B . n A 1 8 GLY 8 8 8 GLY GLY B . n A 1 9 ASP 9 9 9 ASP ASP B . n A 1 10 GLY 10 10 10 GLY GLY B . n A 1 11 SER 11 11 11 SER SER B . n A 1 12 LEU 12 12 12 LEU LEU B . n A 1 13 ALA 13 13 13 ALA ALA B . n A 1 14 PHE 14 14 14 PHE PHE B . n A 1 15 LEU 15 15 15 LEU LEU B . n A 1 16 PRO 16 16 16 PRO PRO B . n A 1 17 GLY 17 17 17 GLY GLY B . n A 1 18 ASP 18 18 18 ASP ASP B . n A 1 19 PHE 19 19 19 PHE PHE B . n A 1 20 SER 20 20 20 SER SER B . n A 1 21 VAL 21 21 21 VAL VAL B . n A 1 22 ALA 22 22 22 ALA ALA B . n A 1 23 SER 23 23 23 SER SER B . n A 1 24 GLY 24 24 24 GLY GLY B . n A 1 25 GLU 25 25 25 GLU GLU B . n A 1 26 GLU 26 26 26 GLU GLU B . n A 1 27 ILE 27 27 27 ILE ILE B . n A 1 28 VAL 28 28 28 VAL VAL B . n A 1 29 PHE 29 29 29 PHE PHE B . n A 1 30 LYS 30 30 30 LYS LYS B . n A 1 31 ASN 31 31 31 ASN ASN B . n A 1 32 ASN 32 32 32 ASN ASN B . n A 1 33 ALA 33 33 33 ALA ALA B . n A 1 34 GLY 34 34 34 GLY GLY B . n A 1 35 PHE 35 35 35 PHE PHE B . n A 1 36 PRO 36 36 36 PRO PRO B . n A 1 37 HIS 37 37 37 HIS HIS B . n A 1 38 ASN 38 38 38 ASN ASN B . n A 1 39 VAL 39 39 39 VAL VAL B . n A 1 40 VAL 40 40 40 VAL VAL B . n A 1 41 PHE 41 41 41 PHE PHE B . n A 1 42 ASP 42 42 42 ASP ASP B . n A 1 43 GLU 43 43 43 GLU GLU B . n A 1 44 ASP 44 44 44 ASP ASP B . n A 1 45 GLU 45 45 45 GLU GLU B . n A 1 46 ILE 46 46 46 ILE ILE B . n A 1 47 PRO 47 47 47 PRO PRO B . n A 1 48 SER 48 48 48 SER SER B . n A 1 49 GLY 49 49 49 GLY GLY B . n A 1 50 VAL 50 50 50 VAL VAL B . n A 1 51 ASP 51 51 51 ASP ASP B . n A 1 52 ALA 52 52 52 ALA ALA B . n A 1 53 ALA 53 53 53 ALA ALA B . n A 1 54 LYS 54 54 54 LYS LYS B . n A 1 55 ILE 55 55 55 ILE ILE B . n A 1 56 SER 56 56 56 SER SER B . n A 1 57 MET 57 57 57 MET MET B . n A 1 58 SER 58 58 58 SER SER B . n A 1 59 GLU 59 59 59 GLU GLU B . n A 1 60 GLU 60 60 60 GLU GLU B . n A 1 61 ASP 61 61 61 ASP ASP B . n A 1 62 LEU 62 62 62 LEU LEU B . n A 1 63 LEU 63 63 63 LEU LEU B . n A 1 64 ASN 64 64 64 ASN ASN B . n A 1 65 ALA 65 65 65 ALA ALA B . n A 1 66 PRO 66 66 66 PRO PRO B . n A 1 67 GLY 67 67 67 GLY GLY B . n A 1 68 GLU 68 68 68 GLU GLU B . n A 1 69 THR 69 69 69 THR THR B . n A 1 70 TYR 70 70 70 TYR TYR B . n A 1 71 LYS 71 71 71 LYS LYS B . n A 1 72 VAL 72 72 72 VAL VAL B . n A 1 73 THR 73 73 73 THR THR B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 THR 75 75 75 THR THR B . n A 1 76 GLU 76 76 76 GLU GLU B . n A 1 77 LYS 77 77 77 LYS LYS B . n A 1 78 GLY 78 78 78 GLY GLY B . n A 1 79 THR 79 79 79 THR THR B . n A 1 80 TYR 80 80 80 TYR TYR B . n A 1 81 LYS 81 81 81 LYS LYS B . n A 1 82 PHE 82 82 82 PHE PHE B . n A 1 83 TYR 83 83 83 TYR TYR B . n A 1 84 CYS 84 84 84 CYS CYS B . n A 1 85 SER 85 85 85 SER SER B . n A 1 86 PRO 86 86 86 PRO PRO B . n A 1 87 HIS 87 87 87 HIS HIS B . n A 1 88 GLN 88 88 88 GLN GLN B . n A 1 89 GLY 89 89 89 GLY GLY B . n A 1 90 ALA 90 90 90 ALA ALA B . n A 1 91 GLY 91 91 91 GLY GLY B . n A 1 92 MET 92 92 92 MET MET B . n A 1 93 VAL 93 93 93 VAL VAL B . n A 1 94 GLY 94 94 94 GLY GLY B . n A 1 95 LYS 95 95 95 LYS LYS B . n A 1 96 VAL 96 96 96 VAL VAL B . n A 1 97 THR 97 97 97 THR THR B . n A 1 98 VAL 98 98 98 VAL VAL B . n A 1 99 ASN 99 99 99 ASN ASN B . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CU1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 100 _pdbx_nonpoly_scheme.auth_seq_num 100 _pdbx_nonpoly_scheme.pdb_mon_id CU1 _pdbx_nonpoly_scheme.auth_mon_id CU1 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 37 ? B HIS 37 ? 1_555 CU ? B CU1 . ? B CU1 100 ? 1_555 SG ? A CYS 84 ? B CYS 84 ? 1_555 124.6 ? 2 ND1 ? A HIS 37 ? B HIS 37 ? 1_555 CU ? B CU1 . ? B CU1 100 ? 1_555 ND1 ? A HIS 87 ? B HIS 87 ? 1_555 100.7 ? 3 SG ? A CYS 84 ? B CYS 84 ? 1_555 CU ? B CU1 . ? B CU1 100 ? 1_555 ND1 ? A HIS 87 ? B HIS 87 ? 1_555 119.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-05 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 82 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CD1 _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PHE _pdbx_validate_rmsd_angle.auth_seq_id_2 82 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PHE _pdbx_validate_rmsd_angle.auth_seq_id_3 82 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.40 _pdbx_validate_rmsd_angle.angle_target_value 120.80 _pdbx_validate_rmsd_angle.angle_deviation -7.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 9 ? ? 69.17 -39.91 2 1 ASN B 32 ? ? -138.34 -43.25 3 1 GLU B 76 ? ? 78.28 115.53 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 PHE B 14 ? ? 0.077 'SIDE CHAIN' 2 1 PHE B 19 ? ? 0.093 'SIDE CHAIN' 3 1 TYR B 80 ? ? 0.128 'SIDE CHAIN' 4 1 PHE B 82 ? ? 0.245 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'COPPER (I) ION' _pdbx_entity_nonpoly.comp_id CU1 #