HEADER HYDROLASE 20-JAN-05 1YM0 TITLE CRYSTAL STRUCTURE OF EARTHWORM FIBRINOLYTIC ENZYME COMPONENT B: A TITLE 2 NOVEL, GLYCOSYLATED TWO-CHAINED TRYPSIN CAVEAT 1YM0 MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRINOTIC ENZYME COMPONENT B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 16-245; COMPND 5 EC: 3.4.21.-; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FIBRINOTIC ENZYME COMPONENT B; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 1J-13D; COMPND 10 EC: 3.4.21.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EISENIA FETIDA; SOURCE 3 ORGANISM_COMMON: COMMON BRANDLING WORM; SOURCE 4 ORGANISM_TAXID: 6396; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: EISENIA FETIDA; SOURCE 7 ORGANISM_COMMON: COMMON BRANDLING WORM; SOURCE 8 ORGANISM_TAXID: 6396 KEYWDS TWO CHAINS, GLYCOSYLATION, PYROGLUTAMATION, EIGHT-MEMBERED RING, CIS KEYWDS 2 PEPTIDE BOND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,C.WANG,M.LI,J.P.ZHANG,L.L.GUI,X.M.AN,W.R.CHANG REVDAT 7 16-OCT-24 1YM0 1 REMARK REVDAT 6 25-OCT-23 1YM0 1 HETSYN LINK REVDAT 5 29-JUL-20 1YM0 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 25-DEC-19 1YM0 1 SEQRES LINK REVDAT 3 13-JUL-11 1YM0 1 VERSN REVDAT 2 24-FEB-09 1YM0 1 VERSN REVDAT 1 19-APR-05 1YM0 0 JRNL AUTH F.WANG,C.WANG,M.LI,J.P.ZHANG,L.L.GUI,X.M.AN,W.R.CHANG JRNL TITL CRYSTAL STRUCTURE OF EARTHWORM FIBRINOLYTIC ENZYME COMPONENT JRNL TITL 2 B: A NOVEL, GLYCOSYLATED TWO-CHAINED TRYPSIN. JRNL REF J.MOL.BIOL. V. 348 671 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15826663 JRNL DOI 10.1016/J.JMB.2005.02.055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.WANG,C.WANG,M.LI,L.L.GUI,J.P.ZHANG,W.R.CHANG REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 EARTHWORM FIBRINOLYTIC ENZYME COMPONENT B FROM EISENIA REMARK 1 TITL 3 FETIDA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 933 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15103143 REMARK 1 DOI 10.1107/S0907444904004895 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 25660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2305 REMARK 3 BIN FREE R VALUE : 0.1968 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.359 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.46 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4CHA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM SULFATE, MES, PH 6.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.40450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.40450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.40450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.40450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.40450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.40450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 144.52950 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 83.44415 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 7.44 -69.08 REMARK 500 HIS A 71 -72.14 -145.87 REMARK 500 ASP A 115 -163.10 -160.84 REMARK 500 ALA A 127 41.64 -88.79 REMARK 500 ASP A 189 168.45 177.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 169 O REMARK 620 2 ASP A 169 OD1 88.6 REMARK 620 3 TYR A 172 O 82.8 165.2 REMARK 620 4 ASP A 174A O 150.1 102.8 79.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 504 O 90.7 REMARK 620 3 HOH A 505 O 85.9 175.0 REMARK 620 4 HOH A 506 O 88.7 92.9 90.7 REMARK 620 5 HOH A 507 O 84.0 89.9 86.0 172.2 REMARK 620 6 HOH A 508 O 177.5 91.2 92.0 92.8 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 572 O REMARK 620 2 HOH A 599 O 73.2 REMARK 620 3 HOH A 624 O 82.6 80.8 REMARK 620 4 HOH A 625 O 94.2 165.1 89.7 REMARK 620 5 HOH A 626 O 85.3 87.0 164.8 100.4 REMARK 620 6 HOH A 627 O 154.0 82.7 84.1 107.9 103.3 REMARK 620 N 1 2 3 4 5 DBREF 1YM0 A 16 245 UNP Q3HR18 Q3HR18_EISFO 8 245 DBREF 1YM0 B 1J 13D PDB 1YM0 1YM0 1 13 SEQRES 1 A 238 ILE VAL GLY GLY ILE GLU ALA ARG PRO TYR GLU PHE PRO SEQRES 2 A 238 TRP GLN VAL SER VAL ARG ARG LYS SER SER ASP SER HIS SEQRES 3 A 238 PHE CYS GLY GLY SER ILE ILE ASN ASP ARG TRP VAL VAL SEQRES 4 A 238 CYS ALA ALA HIS CYS MET GLN GLY GLU ALA PRO ALA LEU SEQRES 5 A 238 VAL SER LEU VAL VAL GLY GLU HIS ASP SER SER ALA ALA SEQRES 6 A 238 SER THR VAL ARG GLN THR HIS ASP VAL ASP SER ILE PHE SEQRES 7 A 238 VAL ASN GLU ASN TYR ASP PRO ALA THR LEU GLU ASN ASP SEQRES 8 A 238 VAL SER VAL ILE LYS THR ALA VAL ALA ILE THR PHE ASP SEQRES 9 A 238 ILE ASN VAL GLY PRO ILE CYS ALA PRO ASP PRO ALA ASN SEQRES 10 A 238 ASP TYR VAL TYR ARG LYS SER GLN CYS SER GLY TRP GLY SEQRES 11 A 238 THR ILE ASN SER GLY GLY VAL CYS CYS PRO ALA VAL LEU SEQRES 12 A 238 ARG TYR VAL THR LEU ASN ILE THR THR ASN ALA PHE CYS SEQRES 13 A 238 ASP ALA VAL TYR THR SER ASP THR ILE TYR ASP ASP MET SEQRES 14 A 238 ILE CYS ALA THR ASP ASN THR GLY MET THR ASP ARG ASP SEQRES 15 A 238 SER CYS GLN GLY ASP SER GLY GLY PRO LEU SER VAL LYS SEQRES 16 A 238 ASP GLY SER GLY ILE PHE SER LEU VAL GLY ILE VAL SER SEQRES 17 A 238 TRP GLY ILE GLY CYS ALA SER GLY TYR PRO GLY VAL TYR SEQRES 18 A 238 SER ARG VAL GLY PHE HIS ALA GLY TRP ILE THR ASP THR SEQRES 19 A 238 ILE THR ASN ASN SEQRES 1 B 27 PCA PRO PRO VAL TRP TYR PRO GLY GLY GLN CYS GLY VAL SEQRES 2 B 27 SER GLN TYR SER ASP ALA GLY ASP MET GLU LEU PRO PRO SEQRES 3 B 27 GLY MODRES 1YM0 ASN A 161 ASN GLYCOSYLATION SITE MODRES 1YM0 PCA B 1J GLN PYROGLUTAMIC ACID HET PCA B 1J 8 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET FUC C 6 10 HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET SO4 A 501 5 HET SO4 A 502 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 PCA C5 H7 N O3 FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 MG 3(MG 2+) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *252(H2 O) HELIX 1 1 ALA A 55 GLN A 60 1 6 HELIX 2 2 ALA A 60C ALA A 62 5 3 HELIX 3 3 THR A 164 TYR A 172 1 9 HELIX 4 4 VAL A 231 ASN A 244 1 14 SHEET 1 A 8 ILE A 20 GLU A 21 0 SHEET 2 A 8 ARG A 156 ILE A 162 -1 O TYR A 157 N ILE A 20 SHEET 3 A 8 MET A 180 THR A 184 -1 O THR A 184 N ASN A 161 SHEET 4 A 8 GLY A 226 ARG A 230 -1 O TYR A 228 N ILE A 181 SHEET 5 A 8 PHE A 207 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 A 8 PRO A 198 LYS A 202 -1 N VAL A 201 O SER A 208 SHEET 7 A 8 LYS A 135 GLY A 140 -1 N GLN A 137 O SER A 200 SHEET 8 A 8 ARG A 156 ILE A 162 -1 O LEU A 160 N SER A 136 SHEET 1 B 7 GLN A 30 ARG A 35 0 SHEET 2 B 7 SER A 39 ASN A 48 -1 O CYS A 42 N VAL A 33 SHEET 3 B 7 TRP A 51 CYS A 54 -1 O VAL A 53 N SER A 45 SHEET 4 B 7 SER A 104 THR A 108 -1 O SER A 104 N CYS A 54 SHEET 5 B 7 GLN A 81 VAL A 90 -1 N ASP A 86 O LYS A 107 SHEET 6 B 7 VAL A 64 VAL A 68 -1 N LEU A 66 O HIS A 83 SHEET 7 B 7 GLN A 30 ARG A 35 -1 N SER A 32 O VAL A 67 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 2 CYS A 122 CYS B 1 1555 1555 2.03 SSBOND 3 CYS A 150 CYS A 151 1555 1555 2.03 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 5 CYS A 191 CYS A 220 1555 1555 2.03 LINK ND2 ASN A 161 C1 NAG C 1 1555 1555 1.45 LINK N PRO B 1I C PCA B 1J 1555 1555 1.35 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O3 NAG C 1 C1 FUC C 5 1555 1555 1.40 LINK O6 NAG C 1 C1 FUC C 6 1555 1555 1.40 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.39 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.40 LINK O ASP A 169 MG MG A 402 1555 1555 2.43 LINK OD1 ASP A 169 MG MG A 402 1555 1555 2.20 LINK O TYR A 172 MG MG A 402 1555 1555 2.43 LINK O ASP A 174A MG MG A 402 1555 1555 2.04 LINK MG MG A 401 O HOH A 503 1555 1555 2.11 LINK MG MG A 401 O HOH A 504 1555 1555 2.02 LINK MG MG A 401 O HOH A 505 1555 1555 2.10 LINK MG MG A 401 O HOH A 506 1555 1555 2.10 LINK MG MG A 401 O HOH A 507 1555 1555 1.99 LINK MG MG A 401 O HOH A 508 1555 1555 2.07 LINK MG MG A 403 O HOH A 572 1555 1555 2.50 LINK MG MG A 403 O HOH A 599 1555 1555 2.37 LINK MG MG A 403 O HOH A 624 1555 1555 2.14 LINK MG MG A 403 O HOH A 625 1555 1555 1.95 LINK MG MG A 403 O HOH A 626 1555 1555 2.05 LINK MG MG A 403 O HOH A 627 1555 1555 1.93 CISPEP 1 CYS A 150 CYS A 151 0 0.13 CRYST1 96.353 96.353 150.809 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010379 0.005992 0.000000 0.00000 SCALE2 0.000000 0.011984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006631 0.00000