HEADER HYDROLASE/HYDROLASE INHIBITOR 20-JAN-05 1YM4 TITLE CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH NVP-AMK640 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 48-453; COMPND 5 SYNONYM: BETA-SITE APP CLEAVING ENZYME 1, BETA-SITE AMYLOID PRECURSOR COMPND 6 PROTEIN CLEAVING ENZYME 1, ASPARTYL PROTEASE 2, ASP 2, ASP2, COMPND 7 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2, MEMAPSIN-2; COMPND 8 EC: 3.4.23.46; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NVP-AMK640 INHIBITOR; COMPND 12 CHAIN: X, Y, Z; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS BETA-SECRETASE, MEMAPSIN2, ALZHEIMER'S DISEASE, ASPARTIC PROTEASE, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HANESSIAN,H.YUN,Y.HOU,G.YANG,M.BAYRAKDARIAN,E.THERRIEN, AUTHOR 2 N.MOITESSIER,S.ROGGO,S.VEENSTRA REVDAT 4 15-NOV-23 1YM4 1 SEQADV LINK ATOM REVDAT 3 13-JUL-11 1YM4 1 VERSN REVDAT 2 24-FEB-09 1YM4 1 VERSN REVDAT 1 17-JAN-06 1YM4 0 JRNL AUTH S.HANESSIAN,H.YUN,Y.HOU,G.YANG,M.BAYRAKDARIAN,E.THERRIEN, JRNL AUTH 2 N.MOITESSIER,S.ROGGO,S.VEENSTRA,M.TINTELNOT-BLOMLEY, JRNL AUTH 3 J.M.RONDEAU,C.OSTERMEIER,A.STRAUSS,P.RAMAGE,P.PAGANETTI, JRNL AUTH 4 U.NEUMANN,C.BETSCHART JRNL TITL STRUCTURE-BASED DESIGN, SYNTHESIS, AND MEMAPSIN 2 (BACE) JRNL TITL 2 INHIBITORY ACTIVITY OF CARBOCYCLIC AND HETEROCYCLIC JRNL TITL 3 PEPTIDOMIMETICS JRNL REF J.MED.CHEM. V. 48 5175 2005 JRNL REFN ISSN 0022-2623 JRNL PMID 16078837 JRNL DOI 10.1021/JM050142+ REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2002 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 26040942.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 67661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6850 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 68076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9993 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1077 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9051 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.25000 REMARK 3 B22 (A**2) : -5.80000 REMARK 3 B33 (A**2) : 25.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -9.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.520 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 49.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NVP-AMK640.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.855064 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX 2000.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, POTASSIUM CHLORIDE, 1,2 REMARK 280 -PROPANEDIOL, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 111.83900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.87550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 111.83900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.87550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE BETA-SECRETASE INHIBITOR NVP-AMK640 IS PEPTIDE-LIKE, A MEMBER REMARK 400 OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: BETA-SECRETASE INHIBITOR NVP-AMK640 REMARK 400 CHAIN: X, Y, Z REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -15 REMARK 465 PRO A -14 REMARK 465 ASP A -13 REMARK 465 GLU A -12 REMARK 465 GLU A -11 REMARK 465 PRO A -10 REMARK 465 GLU A -9 REMARK 465 GLU A -8 REMARK 465 PRO A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 ARG A -4 REMARK 465 GLY A 158 REMARK 465 PHE A 159 REMARK 465 PRO A 160 REMARK 465 LEU A 161 REMARK 465 ASN A 162 REMARK 465 GLN A 163 REMARK 465 SER A 164 REMARK 465 GLU A 165 REMARK 465 VAL A 166 REMARK 465 LEU A 167 REMARK 465 ILE A 386 REMARK 465 PRO A 387 REMARK 465 GLN A 388 REMARK 465 THR A 389 REMARK 465 ASP A 390 REMARK 465 GLU A 391 REMARK 465 SER A 392 REMARK 465 GLY B -15 REMARK 465 PRO B -14 REMARK 465 ASP B -13 REMARK 465 GLU B -12 REMARK 465 GLU B -11 REMARK 465 PRO B -10 REMARK 465 GLU B -9 REMARK 465 GLU B -8 REMARK 465 PRO B -7 REMARK 465 GLY B -6 REMARK 465 ARG B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 GLY B 158 REMARK 465 PHE B 159 REMARK 465 PRO B 160 REMARK 465 LEU B 161 REMARK 465 ASN B 162 REMARK 465 GLN B 163 REMARK 465 SER B 164 REMARK 465 GLU B 165 REMARK 465 VAL B 166 REMARK 465 LEU B 167 REMARK 465 ALA B 168 REMARK 465 ILE B 386 REMARK 465 PRO B 387 REMARK 465 GLN B 388 REMARK 465 THR B 389 REMARK 465 ASP B 390 REMARK 465 GLU B 391 REMARK 465 SER B 392 REMARK 465 GLY C -15 REMARK 465 PRO C -14 REMARK 465 ASP C -13 REMARK 465 GLU C -12 REMARK 465 GLU C -11 REMARK 465 PRO C -10 REMARK 465 GLU C -9 REMARK 465 GLU C -8 REMARK 465 PRO C -7 REMARK 465 GLY C -6 REMARK 465 ARG C -5 REMARK 465 ARG C -4 REMARK 465 GLY C 158 REMARK 465 PHE C 159 REMARK 465 PRO C 160 REMARK 465 LEU C 161 REMARK 465 ASN C 162 REMARK 465 GLN C 163 REMARK 465 SER C 164 REMARK 465 GLU C 165 REMARK 465 VAL C 166 REMARK 465 LEU C 167 REMARK 465 ILE C 386 REMARK 465 PRO C 387 REMARK 465 GLN C 388 REMARK 465 THR C 389 REMARK 465 ASP C 390 REMARK 465 GLU C 391 REMARK 465 SER C 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY B 112 CA GLY B 112 2556 2.16 REMARK 500 O HOH B 2152 O HOH B 2152 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 1 CD GLU X 1 OE2 0.091 REMARK 500 GLU Y 1 CD GLU Y 1 OE2 0.088 REMARK 500 GLU Z 1 CD GLU Z 1 OE2 0.098 REMARK 500 ALA Z 5 C ALA Z 5 O 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 24M Z 4 CA - C - N ANGL. DEV. = 33.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A -1 65.16 -119.46 REMARK 500 ALA A 42 29.49 -141.13 REMARK 500 HIS A 89 46.44 -91.94 REMARK 500 ASN A 92 76.85 -69.56 REMARK 500 ASN A 114 3.28 91.22 REMARK 500 ALA A 122 -165.28 -74.65 REMARK 500 ASP A 131 6.47 -67.52 REMARK 500 LEU A 133 92.93 -67.56 REMARK 500 LEU A 149 148.08 -177.96 REMARK 500 TRP A 197 -72.46 -147.56 REMARK 500 CYS A 217 11.84 -60.63 REMARK 500 PRO A 237 152.36 -49.26 REMARK 500 GLU A 265 -74.06 -79.65 REMARK 500 ALA A 272 116.58 -31.41 REMARK 500 GLU A 310 -112.05 -66.07 REMARK 500 SER A 315 -143.12 -96.48 REMARK 500 ASP A 317 147.60 -170.91 REMARK 500 ALA A 323 37.22 -95.62 REMARK 500 PHE B -1 30.92 -142.40 REMARK 500 HIS B 89 49.04 -94.09 REMARK 500 ASN B 92 88.44 -69.53 REMARK 500 ASN B 114 -1.79 85.96 REMARK 500 ASP B 131 3.94 -58.30 REMARK 500 ASN B 148 72.06 -68.54 REMARK 500 LEU B 149 148.19 -170.88 REMARK 500 TRP B 197 -70.40 -151.13 REMARK 500 LYS B 214 17.30 49.82 REMARK 500 LYS B 224 161.62 177.23 REMARK 500 TRP B 262 1.58 -66.21 REMARK 500 GLU B 265 -73.39 -66.60 REMARK 500 ALA B 272 94.92 -31.46 REMARK 500 PRO B 276 51.90 -68.93 REMARK 500 PRO C 44 151.34 -49.58 REMARK 500 ASP C 62 151.04 -45.66 REMARK 500 LYS C 65 146.35 -172.21 REMARK 500 LEU C 80 -151.67 -68.29 REMARK 500 ASP C 83 167.51 179.61 REMARK 500 ASP C 106 109.60 -169.39 REMARK 500 ASN C 114 -6.29 80.48 REMARK 500 GLU C 125 -18.53 -49.74 REMARK 500 ASP C 131 -0.49 -55.41 REMARK 500 ARG C 194 -74.09 -71.58 REMARK 500 TRP C 197 -43.24 -140.09 REMARK 500 ARG C 205 140.61 -175.68 REMARK 500 GLU C 265 -91.59 -69.42 REMARK 500 GLN C 271 161.88 -48.05 REMARK 500 ALA C 272 94.76 -53.85 REMARK 500 THR C 274 22.27 -149.72 REMARK 500 PRO C 276 56.23 -64.49 REMARK 500 ALA C 323 30.06 -96.14 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 24M X 4 ALA X 5 -122.02 REMARK 500 24M Y 4 ALA Y 5 -112.51 REMARK 500 24M Z 4 ALA Z 5 -118.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 24M X 4 27.58 REMARK 500 24M Y 4 29.70 REMARK 500 24M Z 4 36.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN X OF NVP-AMK640 INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Y OF NVP-AMK640 INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Z OF NVP-AMK640 INHIBITOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YM2 RELATED DB: PDB REMARK 900 BETA-SECRETASE COMPLEXED WITH RELATED COMPOUND NVP-AUR200 DBREF 1YM4 A -13 392 UNP P56817 BAE1_HUMAN 48 453 DBREF 1YM4 B -13 392 UNP P56817 BAE1_HUMAN 48 453 DBREF 1YM4 C -13 392 UNP P56817 BAE1_HUMAN 48 453 DBREF 1YM4 X 1 5 PDB 1YM4 1YM4 1 5 DBREF 1YM4 Y 1 5 PDB 1YM4 1YM4 1 5 DBREF 1YM4 Z 1 5 PDB 1YM4 1YM4 1 5 SEQADV 1YM4 GLY A -15 UNP P56817 EXPRESSION TAG SEQADV 1YM4 PRO A -14 UNP P56817 EXPRESSION TAG SEQADV 1YM4 GLY B -15 UNP P56817 EXPRESSION TAG SEQADV 1YM4 PRO B -14 UNP P56817 EXPRESSION TAG SEQADV 1YM4 GLY C -15 UNP P56817 EXPRESSION TAG SEQADV 1YM4 PRO C -14 UNP P56817 EXPRESSION TAG SEQRES 1 A 408 GLY PRO ASP GLU GLU PRO GLU GLU PRO GLY ARG ARG GLY SEQRES 2 A 408 SER PHE VAL GLU MET VAL ASP ASN LEU ARG GLY LYS SER SEQRES 3 A 408 GLY GLN GLY TYR TYR VAL GLU MET THR VAL GLY SER PRO SEQRES 4 A 408 PRO GLN THR LEU ASN ILE LEU VAL ASP THR GLY SER SER SEQRES 5 A 408 ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO PHE LEU HIS SEQRES 6 A 408 ARG TYR TYR GLN ARG GLN LEU SER SER THR TYR ARG ASP SEQRES 7 A 408 LEU ARG LYS GLY VAL TYR VAL PRO TYR THR GLN GLY LYS SEQRES 8 A 408 TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SER ILE PRO SEQRES 9 A 408 HIS GLY PRO ASN VAL THR VAL ARG ALA ASN ILE ALA ALA SEQRES 10 A 408 ILE THR GLU SER ASP LYS PHE PHE ILE ASN GLY SER ASN SEQRES 11 A 408 TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA GLU ILE ALA SEQRES 12 A 408 ARG PRO ASP ASP SER LEU GLU PRO PHE PHE ASP SER LEU SEQRES 13 A 408 VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SER LEU GLN SEQRES 14 A 408 LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SER GLU VAL SEQRES 15 A 408 LEU ALA SER VAL GLY GLY SER MET ILE ILE GLY GLY ILE SEQRES 16 A 408 ASP HIS SER LEU TYR THR GLY SER LEU TRP TYR THR PRO SEQRES 17 A 408 ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE ILE VAL ARG SEQRES 18 A 408 VAL GLU ILE ASN GLY GLN ASP LEU LYS MET ASP CYS LYS SEQRES 19 A 408 GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SER GLY THR SEQRES 20 A 408 THR ASN LEU ARG LEU PRO LYS LYS VAL PHE GLU ALA ALA SEQRES 21 A 408 VAL LYS SER ILE LYS ALA ALA SER SER THR GLU LYS PHE SEQRES 22 A 408 PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU VAL CYS TRP SEQRES 23 A 408 GLN ALA GLY THR THR PRO TRP ASN ILE PHE PRO VAL ILE SEQRES 24 A 408 SER LEU TYR LEU MET GLY GLU VAL THR ASN GLN SER PHE SEQRES 25 A 408 ARG ILE THR ILE LEU PRO GLN GLN TYR LEU ARG PRO VAL SEQRES 26 A 408 GLU ASP VAL ALA THR SER GLN ASP ASP CYS TYR LYS PHE SEQRES 27 A 408 ALA ILE SER GLN SER SER THR GLY THR VAL MET GLY ALA SEQRES 28 A 408 VAL ILE MET GLU GLY PHE TYR VAL VAL PHE ASP ARG ALA SEQRES 29 A 408 ARG LYS ARG ILE GLY PHE ALA VAL SER ALA CYS HIS VAL SEQRES 30 A 408 HIS ASP GLU PHE ARG THR ALA ALA VAL GLU GLY PRO PHE SEQRES 31 A 408 VAL THR LEU ASP MET GLU ASP CYS GLY TYR ASN ILE PRO SEQRES 32 A 408 GLN THR ASP GLU SER SEQRES 1 B 408 GLY PRO ASP GLU GLU PRO GLU GLU PRO GLY ARG ARG GLY SEQRES 2 B 408 SER PHE VAL GLU MET VAL ASP ASN LEU ARG GLY LYS SER SEQRES 3 B 408 GLY GLN GLY TYR TYR VAL GLU MET THR VAL GLY SER PRO SEQRES 4 B 408 PRO GLN THR LEU ASN ILE LEU VAL ASP THR GLY SER SER SEQRES 5 B 408 ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO PHE LEU HIS SEQRES 6 B 408 ARG TYR TYR GLN ARG GLN LEU SER SER THR TYR ARG ASP SEQRES 7 B 408 LEU ARG LYS GLY VAL TYR VAL PRO TYR THR GLN GLY LYS SEQRES 8 B 408 TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SER ILE PRO SEQRES 9 B 408 HIS GLY PRO ASN VAL THR VAL ARG ALA ASN ILE ALA ALA SEQRES 10 B 408 ILE THR GLU SER ASP LYS PHE PHE ILE ASN GLY SER ASN SEQRES 11 B 408 TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA GLU ILE ALA SEQRES 12 B 408 ARG PRO ASP ASP SER LEU GLU PRO PHE PHE ASP SER LEU SEQRES 13 B 408 VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SER LEU GLN SEQRES 14 B 408 LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SER GLU VAL SEQRES 15 B 408 LEU ALA SER VAL GLY GLY SER MET ILE ILE GLY GLY ILE SEQRES 16 B 408 ASP HIS SER LEU TYR THR GLY SER LEU TRP TYR THR PRO SEQRES 17 B 408 ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE ILE VAL ARG SEQRES 18 B 408 VAL GLU ILE ASN GLY GLN ASP LEU LYS MET ASP CYS LYS SEQRES 19 B 408 GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SER GLY THR SEQRES 20 B 408 THR ASN LEU ARG LEU PRO LYS LYS VAL PHE GLU ALA ALA SEQRES 21 B 408 VAL LYS SER ILE LYS ALA ALA SER SER THR GLU LYS PHE SEQRES 22 B 408 PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU VAL CYS TRP SEQRES 23 B 408 GLN ALA GLY THR THR PRO TRP ASN ILE PHE PRO VAL ILE SEQRES 24 B 408 SER LEU TYR LEU MET GLY GLU VAL THR ASN GLN SER PHE SEQRES 25 B 408 ARG ILE THR ILE LEU PRO GLN GLN TYR LEU ARG PRO VAL SEQRES 26 B 408 GLU ASP VAL ALA THR SER GLN ASP ASP CYS TYR LYS PHE SEQRES 27 B 408 ALA ILE SER GLN SER SER THR GLY THR VAL MET GLY ALA SEQRES 28 B 408 VAL ILE MET GLU GLY PHE TYR VAL VAL PHE ASP ARG ALA SEQRES 29 B 408 ARG LYS ARG ILE GLY PHE ALA VAL SER ALA CYS HIS VAL SEQRES 30 B 408 HIS ASP GLU PHE ARG THR ALA ALA VAL GLU GLY PRO PHE SEQRES 31 B 408 VAL THR LEU ASP MET GLU ASP CYS GLY TYR ASN ILE PRO SEQRES 32 B 408 GLN THR ASP GLU SER SEQRES 1 C 408 GLY PRO ASP GLU GLU PRO GLU GLU PRO GLY ARG ARG GLY SEQRES 2 C 408 SER PHE VAL GLU MET VAL ASP ASN LEU ARG GLY LYS SER SEQRES 3 C 408 GLY GLN GLY TYR TYR VAL GLU MET THR VAL GLY SER PRO SEQRES 4 C 408 PRO GLN THR LEU ASN ILE LEU VAL ASP THR GLY SER SER SEQRES 5 C 408 ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO PHE LEU HIS SEQRES 6 C 408 ARG TYR TYR GLN ARG GLN LEU SER SER THR TYR ARG ASP SEQRES 7 C 408 LEU ARG LYS GLY VAL TYR VAL PRO TYR THR GLN GLY LYS SEQRES 8 C 408 TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SER ILE PRO SEQRES 9 C 408 HIS GLY PRO ASN VAL THR VAL ARG ALA ASN ILE ALA ALA SEQRES 10 C 408 ILE THR GLU SER ASP LYS PHE PHE ILE ASN GLY SER ASN SEQRES 11 C 408 TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA GLU ILE ALA SEQRES 12 C 408 ARG PRO ASP ASP SER LEU GLU PRO PHE PHE ASP SER LEU SEQRES 13 C 408 VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SER LEU GLN SEQRES 14 C 408 LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SER GLU VAL SEQRES 15 C 408 LEU ALA SER VAL GLY GLY SER MET ILE ILE GLY GLY ILE SEQRES 16 C 408 ASP HIS SER LEU TYR THR GLY SER LEU TRP TYR THR PRO SEQRES 17 C 408 ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE ILE VAL ARG SEQRES 18 C 408 VAL GLU ILE ASN GLY GLN ASP LEU LYS MET ASP CYS LYS SEQRES 19 C 408 GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SER GLY THR SEQRES 20 C 408 THR ASN LEU ARG LEU PRO LYS LYS VAL PHE GLU ALA ALA SEQRES 21 C 408 VAL LYS SER ILE LYS ALA ALA SER SER THR GLU LYS PHE SEQRES 22 C 408 PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU VAL CYS TRP SEQRES 23 C 408 GLN ALA GLY THR THR PRO TRP ASN ILE PHE PRO VAL ILE SEQRES 24 C 408 SER LEU TYR LEU MET GLY GLU VAL THR ASN GLN SER PHE SEQRES 25 C 408 ARG ILE THR ILE LEU PRO GLN GLN TYR LEU ARG PRO VAL SEQRES 26 C 408 GLU ASP VAL ALA THR SER GLN ASP ASP CYS TYR LYS PHE SEQRES 27 C 408 ALA ILE SER GLN SER SER THR GLY THR VAL MET GLY ALA SEQRES 28 C 408 VAL ILE MET GLU GLY PHE TYR VAL VAL PHE ASP ARG ALA SEQRES 29 C 408 ARG LYS ARG ILE GLY PHE ALA VAL SER ALA CYS HIS VAL SEQRES 30 C 408 HIS ASP GLU PHE ARG THR ALA ALA VAL GLU GLY PRO PHE SEQRES 31 C 408 VAL THR LEU ASP MET GLU ASP CYS GLY TYR ASN ILE PRO SEQRES 32 C 408 GLN THR ASP GLU SER SEQRES 1 X 5 GLU VAL ASN 24M ALA SEQRES 1 Y 5 GLU VAL ASN 24M ALA SEQRES 1 Z 5 GLU VAL ASN 24M ALA HET 24M X 4 15 HET 24M Y 4 15 HET 24M Z 4 15 HETNAM 24M (1R,2R)-2-[(1S,2S)-2-AMINO-1-HYDROXY-4- HETNAM 2 24M METHYLPENTYL]CYCLOPENTANECARBOXYLIC ACID FORMUL 4 24M 3(C12 H23 N O3) FORMUL 7 HOH *487(H2 O) HELIX 1 1 GLN A 53 SER A 57 5 5 HELIX 2 2 TYR A 123 ALA A 127 5 5 HELIX 3 3 PRO A 135 THR A 144 1 10 HELIX 4 4 LYS A 218 TYR A 222 5 5 HELIX 5 5 LYS A 238 SER A 252 1 15 HELIX 6 6 PRO A 258 GLY A 264 1 7 HELIX 7 7 PRO A 276 PHE A 280 5 5 HELIX 8 8 LEU A 301 TYR A 305 1 5 HELIX 9 9 GLY A 334 GLU A 339 1 6 HELIX 10 10 MET A 379 GLY A 383 5 5 HELIX 11 11 GLN B 53 SER B 57 5 5 HELIX 12 12 TYR B 123 ALA B 127 5 5 HELIX 13 13 PRO B 135 THR B 144 1 10 HELIX 14 14 ASP B 180 SER B 182 5 3 HELIX 15 15 ASP B 216 TYR B 222 5 7 HELIX 16 16 LYS B 238 SER B 252 1 15 HELIX 17 17 PRO B 276 PHE B 280 5 5 HELIX 18 18 LEU B 301 TYR B 305 1 5 HELIX 19 19 ASP B 311 SER B 315 5 5 HELIX 20 20 GLY B 334 GLU B 339 1 6 HELIX 21 21 ARG B 347 ARG B 349 5 3 HELIX 22 22 ASP B 378 GLY B 383 5 6 HELIX 23 23 GLN C 53 SER C 57 5 5 HELIX 24 24 TYR C 123 ALA C 127 5 5 HELIX 25 25 PRO C 135 THR C 144 1 10 HELIX 26 26 ASP C 216 ASN C 221 1 6 HELIX 27 27 LYS C 238 SER C 252 1 15 HELIX 28 28 PRO C 258 GLY C 264 1 7 HELIX 29 29 PRO C 276 PHE C 280 5 5 HELIX 30 30 LEU C 301 TYR C 305 1 5 HELIX 31 31 GLY C 334 GLU C 339 1 6 HELIX 32 32 ARG C 347 ARG C 349 5 3 HELIX 33 33 MET C 379 GLY C 383 5 5 SHEET 1 A 9 ARG A 61 PRO A 70 0 SHEET 2 A 9 LYS A 75 SER A 86 -1 O LEU A 80 N LYS A 65 SHEET 3 A 9 TYR A 14 VAL A 20 -1 N THR A 19 O SER A 86 SHEET 4 A 9 LEU A 6 LYS A 9 -1 N ARG A 7 O TYR A 15 SHEET 5 A 9 SER A 169 ILE A 176 -1 O GLY A 172 N LEU A 6 SHEET 6 A 9 PHE A 150 CYS A 155 -1 N CYS A 155 O GLY A 171 SHEET 7 A 9 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150 SHEET 8 A 9 ARG A 351 SER A 357 -1 O ARG A 351 N ASP A 346 SHEET 9 A 9 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352 SHEET 1 B13 ARG A 61 PRO A 70 0 SHEET 2 B13 LYS A 75 SER A 86 -1 O LEU A 80 N LYS A 65 SHEET 3 B13 VAL A 95 ASP A 106 -1 O ILE A 99 N GLY A 81 SHEET 4 B13 PHE A 38 GLY A 41 1 N VAL A 40 O ALA A 100 SHEET 5 B13 GLY A 117 GLY A 120 -1 O ILE A 118 N ALA A 39 SHEET 6 B13 GLN A 25 ASP A 32 1 N LEU A 30 O GLY A 117 SHEET 7 B13 TYR A 14 VAL A 20 -1 N TYR A 14 O VAL A 31 SHEET 8 B13 LEU A 6 LYS A 9 -1 N ARG A 7 O TYR A 15 SHEET 9 B13 SER A 169 ILE A 176 -1 O GLY A 172 N LEU A 6 SHEET 10 B13 PHE A 150 CYS A 155 -1 N CYS A 155 O GLY A 171 SHEET 11 B13 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150 SHEET 12 B13 ARG A 351 SER A 357 -1 O ARG A 351 N ASP A 346 SHEET 13 B13 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352 SHEET 1 C 5 GLN A 211 ASP A 212 0 SHEET 2 C 5 ILE A 203 ILE A 208 -1 N ILE A 208 O GLN A 211 SHEET 3 C 5 ILE A 283 MET A 288 -1 O TYR A 286 N ARG A 205 SHEET 4 C 5 GLN A 294 ILE A 300 -1 O ILE A 298 N LEU A 285 SHEET 5 C 5 ALA A 369 VAL A 375 -1 O GLU A 371 N ARG A 297 SHEET 1 D 4 SER A 225 VAL A 227 0 SHEET 2 D 4 THR A 331 MET A 333 1 O MET A 333 N ILE A 226 SHEET 3 D 4 LEU A 234 PRO A 237 -1 N ARG A 235 O VAL A 332 SHEET 4 D 4 ILE A 324 SER A 327 1 O SER A 325 N LEU A 236 SHEET 1 E 3 VAL A 268 TRP A 270 0 SHEET 2 E 3 ASP A 318 PHE A 322 -1 O TYR A 320 N VAL A 268 SHEET 3 E 3 LEU A 306 VAL A 309 -1 N ARG A 307 O LYS A 321 SHEET 1 F 9 ARG B 61 PRO B 70 0 SHEET 2 F 9 LYS B 75 SER B 86 -1 O LEU B 80 N LYS B 65 SHEET 3 F 9 TYR B 14 VAL B 20 -1 N THR B 19 O SER B 86 SHEET 4 F 9 LEU B 6 GLY B 8 -1 N ARG B 7 O TYR B 15 SHEET 5 F 9 VAL B 170 ILE B 176 -1 O GLY B 172 N LEU B 6 SHEET 6 F 9 PHE B 150 CYS B 155 -1 N CYS B 155 O GLY B 171 SHEET 7 F 9 PHE B 341 ASP B 346 -1 O PHE B 345 N PHE B 150 SHEET 8 F 9 ARG B 351 SER B 357 -1 O ALA B 355 N TYR B 342 SHEET 9 F 9 TYR B 184 PRO B 192 -1 N THR B 191 O ILE B 352 SHEET 1 G13 ARG B 61 PRO B 70 0 SHEET 2 G13 LYS B 75 SER B 86 -1 O LEU B 80 N LYS B 65 SHEET 3 G13 THR B 94 ASP B 106 -1 O ILE B 99 N GLY B 81 SHEET 4 G13 PHE B 38 GLY B 41 1 N VAL B 40 O ILE B 102 SHEET 5 G13 GLY B 117 GLY B 120 -1 O ILE B 118 N ALA B 39 SHEET 6 G13 GLN B 25 ASP B 32 1 N LEU B 30 O GLY B 117 SHEET 7 G13 TYR B 14 VAL B 20 -1 N MET B 18 O LEU B 27 SHEET 8 G13 LEU B 6 GLY B 8 -1 N ARG B 7 O TYR B 15 SHEET 9 G13 VAL B 170 ILE B 176 -1 O GLY B 172 N LEU B 6 SHEET 10 G13 PHE B 150 CYS B 155 -1 N CYS B 155 O GLY B 171 SHEET 11 G13 PHE B 341 ASP B 346 -1 O PHE B 345 N PHE B 150 SHEET 12 G13 ARG B 351 SER B 357 -1 O ALA B 355 N TYR B 342 SHEET 13 G13 TYR B 184 PRO B 192 -1 N THR B 191 O ILE B 352 SHEET 1 H 5 GLU B 200 VAL B 201 0 SHEET 2 H 5 SER B 225 VAL B 227 -1 O SER B 225 N VAL B 201 SHEET 3 H 5 THR B 331 MET B 333 1 O MET B 333 N ILE B 226 SHEET 4 H 5 LEU B 234 PRO B 237 -1 N ARG B 235 O VAL B 332 SHEET 5 H 5 GLN B 326 SER B 327 1 O SER B 327 N LEU B 236 SHEET 1 I 5 GLN B 211 ASP B 212 0 SHEET 2 I 5 ILE B 203 ILE B 208 -1 N ILE B 208 O GLN B 211 SHEET 3 I 5 ILE B 283 MET B 288 -1 O TYR B 286 N ARG B 205 SHEET 4 I 5 GLN B 294 ILE B 300 -1 O PHE B 296 N LEU B 287 SHEET 5 I 5 ALA B 369 VAL B 375 -1 O ALA B 369 N THR B 299 SHEET 1 J 3 VAL B 268 GLN B 271 0 SHEET 2 J 3 ASP B 317 PHE B 322 -1 O TYR B 320 N VAL B 268 SHEET 3 J 3 LEU B 306 PRO B 308 -1 N ARG B 307 O LYS B 321 SHEET 1 K 9 GLY C 66 PRO C 70 0 SHEET 2 K 9 LYS C 75 GLU C 79 -1 O TRP C 76 N VAL C 69 SHEET 3 K 9 ALA C 100 ASP C 106 -1 O ALA C 101 N GLU C 79 SHEET 4 K 9 ALA C 39 GLY C 41 1 N VAL C 40 O ILE C 102 SHEET 5 K 9 GLY C 117 GLY C 120 -1 O ILE C 118 N ALA C 39 SHEET 6 K 9 GLN C 25 ASP C 32 1 N LEU C 30 O LEU C 119 SHEET 7 K 9 TYR C 15 VAL C 20 -1 N VAL C 16 O ILE C 29 SHEET 8 K 9 THR C 82 SER C 86 -1 O SER C 86 N THR C 19 SHEET 9 K 9 THR C 94 ASN C 98 -1 O VAL C 95 N VAL C 85 SHEET 1 L13 GLY C 66 PRO C 70 0 SHEET 2 L13 LYS C 75 GLU C 79 -1 O TRP C 76 N VAL C 69 SHEET 3 L13 ALA C 100 ASP C 106 -1 O ALA C 101 N GLU C 79 SHEET 4 L13 ALA C 39 GLY C 41 1 N VAL C 40 O ILE C 102 SHEET 5 L13 GLY C 117 GLY C 120 -1 O ILE C 118 N ALA C 39 SHEET 6 L13 GLN C 25 ASP C 32 1 N LEU C 30 O LEU C 119 SHEET 7 L13 TYR C 15 VAL C 20 -1 N VAL C 16 O ILE C 29 SHEET 8 L13 LEU C 6 LYS C 9 -1 N ARG C 7 O TYR C 15 SHEET 9 L13 SER C 169 ILE C 176 -1 O GLY C 172 N LEU C 6 SHEET 10 L13 PHE C 150 CYS C 155 -1 N GLN C 153 O SER C 173 SHEET 11 L13 TYR C 342 ASP C 346 -1 O VAL C 343 N LEU C 152 SHEET 12 L13 ARG C 351 SER C 357 -1 O GLY C 353 N VAL C 344 SHEET 13 L13 TYR C 184 PRO C 192 -1 N TRP C 189 O PHE C 354 SHEET 1 M 5 GLU C 200 VAL C 201 0 SHEET 2 M 5 SER C 225 VAL C 227 -1 O SER C 225 N VAL C 201 SHEET 3 M 5 THR C 331 MET C 333 1 O THR C 331 N ILE C 226 SHEET 4 M 5 LEU C 234 PRO C 237 -1 N ARG C 235 O VAL C 332 SHEET 5 M 5 ILE C 324 SER C 327 1 O SER C 325 N LEU C 234 SHEET 1 N 5 GLN C 211 ASP C 212 0 SHEET 2 N 5 ILE C 203 ILE C 208 -1 N ILE C 208 O GLN C 211 SHEET 3 N 5 ILE C 283 MET C 288 -1 O TYR C 286 N ARG C 205 SHEET 4 N 5 GLN C 294 ILE C 300 -1 O PHE C 296 N LEU C 287 SHEET 5 N 5 ALA C 369 VAL C 375 -1 O GLU C 371 N ARG C 297 SHEET 1 O 3 CYS C 269 TRP C 270 0 SHEET 2 O 3 ASP C 318 PHE C 322 -1 O ASP C 318 N TRP C 270 SHEET 3 O 3 LEU C 306 PRO C 308 -1 N ARG C 307 O LYS C 321 SSBOND 1 CYS A 155 CYS A 359 1555 1555 2.03 SSBOND 2 CYS A 217 CYS A 382 1555 1555 2.04 SSBOND 3 CYS A 269 CYS A 319 1555 1555 2.03 SSBOND 4 CYS B 155 CYS B 359 1555 1555 2.04 SSBOND 5 CYS B 217 CYS B 382 1555 1555 2.04 SSBOND 6 CYS B 269 CYS B 319 1555 1555 2.02 SSBOND 7 CYS C 155 CYS C 359 1555 1555 2.04 SSBOND 8 CYS C 217 CYS C 382 1555 1555 2.04 SSBOND 9 CYS C 269 CYS C 319 1555 1555 2.04 LINK C ASN X 3 N 24M X 4 1555 1555 1.34 LINK C 24M X 4 N ALA X 5 1555 1555 1.34 LINK C ASN Y 3 N 24M Y 4 1555 1555 1.34 LINK C 24M Y 4 N ALA Y 5 1555 1555 1.36 LINK C ASN Z 3 N 24M Z 4 1555 1555 1.34 LINK C 24M Z 4 N ALA Z 5 1555 1555 1.35 CISPEP 1 SER A 22 PRO A 23 0 -1.62 CISPEP 2 ARG A 128 PRO A 129 0 0.56 CISPEP 3 TYR A 222 ASP A 223 0 1.88 CISPEP 4 GLY A 372 PRO A 373 0 -0.58 CISPEP 5 SER B 22 PRO B 23 0 0.09 CISPEP 6 ARG B 128 PRO B 129 0 0.56 CISPEP 7 TYR B 222 ASP B 223 0 0.93 CISPEP 8 GLY B 372 PRO B 373 0 0.44 CISPEP 9 SER C 22 PRO C 23 0 -0.31 CISPEP 10 ARG C 128 PRO C 129 0 -0.05 CISPEP 11 TYR C 222 ASP C 223 0 1.06 CISPEP 12 GLY C 372 PRO C 373 0 -0.30 SITE 1 AC1 23 GLY A 11 ASP A 32 GLY A 34 TYR A 71 SITE 2 AC1 23 THR A 72 GLN A 73 ILE A 110 ARG A 128 SITE 3 AC1 23 TYR A 198 ASP A 228 GLY A 230 THR A 231 SITE 4 AC1 23 THR A 232 ARG A 235 ARG A 307 LYS A 321 SITE 5 AC1 23 HOH A1028 HOH A1090 HOH X1012 HOH X1091 SITE 6 AC1 23 HOH X1165 HOH X1172 HOH X1192 SITE 1 AC2 22 GLY B 11 GLN B 12 GLY B 13 ASP B 32 SITE 2 AC2 22 GLY B 34 TYR B 71 THR B 72 GLN B 73 SITE 3 AC2 22 ILE B 110 TYR B 198 ASP B 228 GLY B 230 SITE 4 AC2 22 THR B 231 THR B 232 ARG B 235 ARG B 307 SITE 5 AC2 22 ASP B 311 ALA B 313 HOH B2026 HOH B2062 SITE 6 AC2 22 HOH Y2035 HOH Y2139 SITE 1 AC3 19 GLY C 11 GLN C 12 LEU C 30 ASP C 32 SITE 2 AC3 19 PRO C 70 TYR C 71 THR C 72 GLN C 73 SITE 3 AC3 19 ILE C 110 TYR C 198 ASP C 228 GLY C 230 SITE 4 AC3 19 THR C 231 THR C 232 ARG C 235 ARG C 307 SITE 5 AC3 19 HOH C3003 HOH Z3076 HOH Z3094 CRYST1 223.678 107.751 61.475 90.00 100.32 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004471 0.000000 0.000814 0.00000 SCALE2 0.000000 0.009281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016534 0.00000