data_1YMD # _entry.id 1YMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YMD pdb_00001ymd 10.2210/pdb1ymd/pdb RCSB RCSB031681 ? ? WWPDB D_1000031681 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YM9 'Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form' unspecified PDB 1YMK 'Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form' unspecified PDB 1YML 'Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form' unspecified PDB 1YS0 ;Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the disulfide form ; unspecified # _pdbx_database_status.entry_id 1YMD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.recvd_initial_deposition_date 2005-01-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buhrman, G.K.' 1 'Parker, B.' 2 'Sohn, J.' 3 'Rudolph, J.' 4 'Mattos, C.' 5 # _citation.id primary _citation.title 'Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 5307 _citation.page_last 5316 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15807524 _citation.pdbx_database_id_DOI '10.1021/bi047449fS0006-2960(04)07449-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Buhrman, G.K.' 1 ? primary 'Parker, B.' 2 ? primary 'Sohn, J.' 3 ? primary 'Rudolph, J.' 4 ? primary 'Mattos, C.' 5 ? # _cell.entry_id 1YMD _cell.length_a 49.702 _cell.length_b 71.152 _cell.length_c 74.431 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YMD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting orthorhombic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M-phase inducer phosphatase 2' 20729.801 1 3.1.3.48 ? 'catalytic domain' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 203 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CDC25B Phosphatase; Dual specificity phosphatase Cdc25B' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.3.1.3.48 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFH(OCS)EFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPM NHEAFKDELKTFRLKTRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEA FKDELKTFRLKTRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ILE n 1 5 GLY n 1 6 ASP n 1 7 TYR n 1 8 SER n 1 9 LYS n 1 10 ALA n 1 11 PHE n 1 12 LEU n 1 13 LEU n 1 14 GLN n 1 15 THR n 1 16 VAL n 1 17 ASP n 1 18 GLY n 1 19 LYS n 1 20 HIS n 1 21 GLN n 1 22 ASP n 1 23 LEU n 1 24 LYS n 1 25 TYR n 1 26 ILE n 1 27 SER n 1 28 PRO n 1 29 GLU n 1 30 THR n 1 31 MET n 1 32 VAL n 1 33 ALA n 1 34 LEU n 1 35 LEU n 1 36 THR n 1 37 GLY n 1 38 LYS n 1 39 PHE n 1 40 SER n 1 41 ASN n 1 42 ILE n 1 43 VAL n 1 44 ASP n 1 45 LYS n 1 46 PHE n 1 47 VAL n 1 48 ILE n 1 49 VAL n 1 50 ASP n 1 51 CYS n 1 52 ARG n 1 53 TYR n 1 54 PRO n 1 55 TYR n 1 56 GLU n 1 57 TYR n 1 58 GLU n 1 59 GLY n 1 60 GLY n 1 61 HIS n 1 62 ILE n 1 63 LYS n 1 64 THR n 1 65 ALA n 1 66 VAL n 1 67 ASN n 1 68 LEU n 1 69 PRO n 1 70 LEU n 1 71 GLU n 1 72 ARG n 1 73 ASP n 1 74 ALA n 1 75 GLU n 1 76 SER n 1 77 PHE n 1 78 LEU n 1 79 LEU n 1 80 LYS n 1 81 SER n 1 82 PRO n 1 83 ILE n 1 84 ALA n 1 85 PRO n 1 86 CYS n 1 87 SER n 1 88 LEU n 1 89 ASP n 1 90 LYS n 1 91 ARG n 1 92 VAL n 1 93 ILE n 1 94 LEU n 1 95 ILE n 1 96 PHE n 1 97 HIS n 1 98 OCS n 1 99 GLU n 1 100 PHE n 1 101 SER n 1 102 SER n 1 103 GLU n 1 104 ARG n 1 105 GLY n 1 106 PRO n 1 107 ARG n 1 108 MET n 1 109 CYS n 1 110 ARG n 1 111 PHE n 1 112 ILE n 1 113 ARG n 1 114 GLU n 1 115 ARG n 1 116 ASP n 1 117 ARG n 1 118 ALA n 1 119 VAL n 1 120 ASN n 1 121 ASP n 1 122 TYR n 1 123 PRO n 1 124 SER n 1 125 LEU n 1 126 TYR n 1 127 TYR n 1 128 PRO n 1 129 GLU n 1 130 MET n 1 131 TYR n 1 132 ILE n 1 133 LEU n 1 134 LYS n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 LYS n 1 139 GLU n 1 140 PHE n 1 141 PHE n 1 142 PRO n 1 143 GLN n 1 144 HIS n 1 145 PRO n 1 146 ASN n 1 147 PHE n 1 148 CYS n 1 149 GLU n 1 150 PRO n 1 151 GLN n 1 152 ASP n 1 153 TYR n 1 154 ARG n 1 155 PRO n 1 156 MET n 1 157 ASN n 1 158 HIS n 1 159 GLU n 1 160 ALA n 1 161 PHE n 1 162 LYS n 1 163 ASP n 1 164 GLU n 1 165 LEU n 1 166 LYS n 1 167 THR n 1 168 PHE n 1 169 ARG n 1 170 LEU n 1 171 LYS n 1 172 THR n 1 173 ARG n 1 174 SER n 1 175 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CDC25B, CDC25HU2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code MPIP2_HUMAN _struct_ref.pdbx_db_accession P30305 _struct_ref.pdbx_align_begin 391 _struct_ref.pdbx_seq_one_letter_code ;ELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS PIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAF KDELKTFRLKTRSW ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YMD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30305 _struct_ref_seq.db_align_beg 391 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 564 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 377 _struct_ref_seq.pdbx_auth_seq_align_end 550 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YMD MET A 1 ? UNP P30305 ? ? 'initiating methionine' 376 1 1 1YMD OCS A 98 ? UNP P30305 CYS 487 'modified residue' 473 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YMD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 57.6 _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.pH 7.25 _exptl_crystal_grow.pdbx_details 'DTT, Tris, Ammonium Sulfate, pH 7.25, VAPOR DIFFUSION, HANGING DROP, temperature 100.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 1YMD _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.74 _reflns.d_resolution_high 1.70 _reflns.number_obs 28852 _reflns.number_all 28852 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 18.1 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1YMD _refine.ls_number_reflns_obs 28852 _refine.ls_number_reflns_all 28852 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 254602.00 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.74 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.19 _refine.ls_R_factor_all 0.19 _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.209 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2865 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.4 _refine.aniso_B[1][1] 3.04 _refine.aniso_B[2][2] -1.69 _refine.aniso_B[3][3] -1.36 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.370394 _refine.solvent_model_param_bsol 23.2853 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1QB0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YMD _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1430 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 203 _refine_hist.number_atoms_total 1634 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 35.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.68 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.15 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.81 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.21 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.40 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 3948 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs 91.2 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error 0.012 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 478 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN3.PARAM PROTEIN3.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1YMD _struct.title 'Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YMD _struct_keywords.pdbx_keywords 'HYDROLASE, CELL CYCLE' _struct_keywords.text 'Sulfinic Cysteine, HYDROLASE, CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? THR A 36 ? SER A 402 THR A 411 1 ? 10 HELX_P HELX_P2 2 TYR A 53 ? GLY A 59 ? TYR A 428 GLY A 434 1 ? 7 HELX_P HELX_P3 3 LEU A 70 ? LYS A 80 ? LEU A 445 LYS A 455 1 ? 11 HELX_P HELX_P4 4 GLU A 103 ? VAL A 119 ? GLU A 478 VAL A 494 1 ? 17 HELX_P HELX_P5 5 GLY A 135 ? PHE A 141 ? GLY A 510 PHE A 516 1 ? 7 HELX_P HELX_P6 6 HIS A 144 ? ASN A 146 ? HIS A 519 ASN A 521 5 ? 3 HELX_P HELX_P7 7 HIS A 158 ? ALA A 160 ? HIS A 533 ALA A 535 5 ? 3 HELX_P HELX_P8 8 PHE A 161 ? LEU A 170 ? PHE A 536 LEU A 545 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 97 C ? ? ? 1_555 A OCS 98 N ? ? A HIS 472 A OCS 473 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A OCS 98 C ? ? ? 1_555 A GLU 99 N ? ? A OCS 473 A GLU 474 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 122 A . ? TYR 497 A PRO 123 A ? PRO 498 A 1 -0.19 2 GLU 149 A . ? GLU 524 A PRO 150 A ? PRO 525 A 1 -0.70 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 25 ? ILE A 26 ? TYR A 400 ILE A 401 A 2 MET A 130 ? LEU A 133 ? MET A 505 LEU A 508 A 3 ARG A 91 ? HIS A 97 ? ARG A 466 HIS A 472 A 4 VAL A 43 ? ASP A 50 ? VAL A 418 ASP A 425 A 5 VAL A 66 ? ASN A 67 ? VAL A 441 ASN A 442 B 1 HIS A 61 ? ILE A 62 ? HIS A 436 ILE A 437 B 2 CYS A 148 ? GLU A 149 ? CYS A 523 GLU A 524 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 26 ? N ILE A 401 O ILE A 132 ? O ILE A 507 A 2 3 O TYR A 131 ? O TYR A 506 N PHE A 96 ? N PHE A 471 A 3 4 O ILE A 95 ? O ILE A 470 N VAL A 49 ? N VAL A 424 A 4 5 N ILE A 48 ? N ILE A 423 O VAL A 66 ? O VAL A 441 B 1 2 N HIS A 61 ? N HIS A 436 O GLU A 149 ? O GLU A 524 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 1001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH C . ? HOH A 13 . ? 1_555 ? 2 AC1 4 HOH C . ? HOH A 126 . ? 1_555 ? 3 AC1 4 GLU A 71 ? GLU A 446 . ? 1_555 ? 4 AC1 4 ARG A 173 ? ARG A 548 . ? 1_555 ? # _atom_sites.entry_id 1YMD _atom_sites.fract_transf_matrix[1][1] 0.020120 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014054 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013435 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 376 376 MET MET A . n A 1 2 GLU 2 377 377 GLU GLU A . n A 1 3 LEU 3 378 378 LEU LEU A . n A 1 4 ILE 4 379 379 ILE ILE A . n A 1 5 GLY 5 380 380 GLY GLY A . n A 1 6 ASP 6 381 381 ASP ASP A . n A 1 7 TYR 7 382 382 TYR TYR A . n A 1 8 SER 8 383 383 SER SER A . n A 1 9 LYS 9 384 384 LYS LYS A . n A 1 10 ALA 10 385 385 ALA ALA A . n A 1 11 PHE 11 386 386 PHE PHE A . n A 1 12 LEU 12 387 387 LEU LEU A . n A 1 13 LEU 13 388 388 LEU LEU A . n A 1 14 GLN 14 389 389 GLN GLN A . n A 1 15 THR 15 390 390 THR THR A . n A 1 16 VAL 16 391 391 VAL VAL A . n A 1 17 ASP 17 392 392 ASP ASP A . n A 1 18 GLY 18 393 393 GLY GLY A . n A 1 19 LYS 19 394 394 LYS LYS A . n A 1 20 HIS 20 395 395 HIS HIS A . n A 1 21 GLN 21 396 396 GLN GLN A . n A 1 22 ASP 22 397 397 ASP ASP A . n A 1 23 LEU 23 398 398 LEU LEU A . n A 1 24 LYS 24 399 399 LYS LYS A . n A 1 25 TYR 25 400 400 TYR TYR A . n A 1 26 ILE 26 401 401 ILE ILE A . n A 1 27 SER 27 402 402 SER SER A . n A 1 28 PRO 28 403 403 PRO PRO A . n A 1 29 GLU 29 404 404 GLU GLU A . n A 1 30 THR 30 405 405 THR THR A . n A 1 31 MET 31 406 406 MET MET A . n A 1 32 VAL 32 407 407 VAL VAL A . n A 1 33 ALA 33 408 408 ALA ALA A . n A 1 34 LEU 34 409 409 LEU LEU A . n A 1 35 LEU 35 410 410 LEU LEU A . n A 1 36 THR 36 411 411 THR THR A . n A 1 37 GLY 37 412 412 GLY GLY A . n A 1 38 LYS 38 413 413 LYS LYS A . n A 1 39 PHE 39 414 414 PHE PHE A . n A 1 40 SER 40 415 415 SER SER A . n A 1 41 ASN 41 416 416 ASN ASN A . n A 1 42 ILE 42 417 417 ILE ILE A . n A 1 43 VAL 43 418 418 VAL VAL A . n A 1 44 ASP 44 419 419 ASP ASP A . n A 1 45 LYS 45 420 420 LYS LYS A . n A 1 46 PHE 46 421 421 PHE PHE A . n A 1 47 VAL 47 422 422 VAL VAL A . n A 1 48 ILE 48 423 423 ILE ILE A . n A 1 49 VAL 49 424 424 VAL VAL A . n A 1 50 ASP 50 425 425 ASP ASP A . n A 1 51 CYS 51 426 426 CYS CYS A . n A 1 52 ARG 52 427 427 ARG ARG A . n A 1 53 TYR 53 428 428 TYR TYR A . n A 1 54 PRO 54 429 429 PRO PRO A . n A 1 55 TYR 55 430 430 TYR TYR A . n A 1 56 GLU 56 431 431 GLU GLU A . n A 1 57 TYR 57 432 432 TYR TYR A . n A 1 58 GLU 58 433 433 GLU GLU A . n A 1 59 GLY 59 434 434 GLY GLY A . n A 1 60 GLY 60 435 435 GLY GLY A . n A 1 61 HIS 61 436 436 HIS HIS A . n A 1 62 ILE 62 437 437 ILE ILE A . n A 1 63 LYS 63 438 438 LYS LYS A . n A 1 64 THR 64 439 439 THR THR A . n A 1 65 ALA 65 440 440 ALA ALA A . n A 1 66 VAL 66 441 441 VAL VAL A . n A 1 67 ASN 67 442 442 ASN ASN A . n A 1 68 LEU 68 443 443 LEU LEU A . n A 1 69 PRO 69 444 444 PRO PRO A . n A 1 70 LEU 70 445 445 LEU LEU A . n A 1 71 GLU 71 446 446 GLU GLU A . n A 1 72 ARG 72 447 447 ARG ARG A . n A 1 73 ASP 73 448 448 ASP ASP A . n A 1 74 ALA 74 449 449 ALA ALA A . n A 1 75 GLU 75 450 450 GLU GLU A . n A 1 76 SER 76 451 451 SER SER A . n A 1 77 PHE 77 452 452 PHE PHE A . n A 1 78 LEU 78 453 453 LEU LEU A . n A 1 79 LEU 79 454 454 LEU LEU A . n A 1 80 LYS 80 455 455 LYS LYS A . n A 1 81 SER 81 456 456 SER SER A . n A 1 82 PRO 82 457 457 PRO PRO A . n A 1 83 ILE 83 458 458 ILE ILE A . n A 1 84 ALA 84 459 459 ALA ALA A . n A 1 85 PRO 85 460 460 PRO PRO A . n A 1 86 CYS 86 461 ? ? ? A . n A 1 87 SER 87 462 ? ? ? A . n A 1 88 LEU 88 463 ? ? ? A . n A 1 89 ASP 89 464 ? ? ? A . n A 1 90 LYS 90 465 465 LYS LYS A . n A 1 91 ARG 91 466 466 ARG ARG A . n A 1 92 VAL 92 467 467 VAL VAL A . n A 1 93 ILE 93 468 468 ILE ILE A . n A 1 94 LEU 94 469 469 LEU LEU A . n A 1 95 ILE 95 470 470 ILE ILE A . n A 1 96 PHE 96 471 471 PHE PHE A . n A 1 97 HIS 97 472 472 HIS HIS A . n A 1 98 OCS 98 473 473 OCS OCS A . n A 1 99 GLU 99 474 474 GLU GLU A . n A 1 100 PHE 100 475 475 PHE PHE A . n A 1 101 SER 101 476 476 SER SER A . n A 1 102 SER 102 477 477 SER SER A . n A 1 103 GLU 103 478 478 GLU GLU A . n A 1 104 ARG 104 479 479 ARG ARG A . n A 1 105 GLY 105 480 480 GLY GLY A . n A 1 106 PRO 106 481 481 PRO PRO A . n A 1 107 ARG 107 482 482 ARG ARG A . n A 1 108 MET 108 483 483 MET MET A . n A 1 109 CYS 109 484 484 CYS CYS A . n A 1 110 ARG 110 485 485 ARG ARG A . n A 1 111 PHE 111 486 486 PHE PHE A . n A 1 112 ILE 112 487 487 ILE ILE A . n A 1 113 ARG 113 488 488 ARG ARG A . n A 1 114 GLU 114 489 489 GLU GLU A . n A 1 115 ARG 115 490 490 ARG ARG A . n A 1 116 ASP 116 491 491 ASP ASP A . n A 1 117 ARG 117 492 492 ARG ARG A . n A 1 118 ALA 118 493 493 ALA ALA A . n A 1 119 VAL 119 494 494 VAL VAL A . n A 1 120 ASN 120 495 495 ASN ASN A . n A 1 121 ASP 121 496 496 ASP ASP A . n A 1 122 TYR 122 497 497 TYR TYR A . n A 1 123 PRO 123 498 498 PRO PRO A . n A 1 124 SER 124 499 499 SER SER A . n A 1 125 LEU 125 500 500 LEU LEU A . n A 1 126 TYR 126 501 501 TYR TYR A . n A 1 127 TYR 127 502 502 TYR TYR A . n A 1 128 PRO 128 503 503 PRO PRO A . n A 1 129 GLU 129 504 504 GLU GLU A . n A 1 130 MET 130 505 505 MET MET A . n A 1 131 TYR 131 506 506 TYR TYR A . n A 1 132 ILE 132 507 507 ILE ILE A . n A 1 133 LEU 133 508 508 LEU LEU A . n A 1 134 LYS 134 509 509 LYS LYS A . n A 1 135 GLY 135 510 510 GLY GLY A . n A 1 136 GLY 136 511 511 GLY GLY A . n A 1 137 TYR 137 512 512 TYR TYR A . n A 1 138 LYS 138 513 513 LYS LYS A . n A 1 139 GLU 139 514 514 GLU GLU A . n A 1 140 PHE 140 515 515 PHE PHE A . n A 1 141 PHE 141 516 516 PHE PHE A . n A 1 142 PRO 142 517 517 PRO PRO A . n A 1 143 GLN 143 518 518 GLN GLN A . n A 1 144 HIS 144 519 519 HIS HIS A . n A 1 145 PRO 145 520 520 PRO PRO A . n A 1 146 ASN 146 521 521 ASN ASN A . n A 1 147 PHE 147 522 522 PHE PHE A . n A 1 148 CYS 148 523 523 CYS CYS A . n A 1 149 GLU 149 524 524 GLU GLU A . n A 1 150 PRO 150 525 525 PRO PRO A . n A 1 151 GLN 151 526 526 GLN GLN A . n A 1 152 ASP 152 527 527 ASP ASP A . n A 1 153 TYR 153 528 528 TYR TYR A . n A 1 154 ARG 154 529 529 ARG ARG A . n A 1 155 PRO 155 530 530 PRO PRO A . n A 1 156 MET 156 531 531 MET MET A . n A 1 157 ASN 157 532 532 ASN ASN A . n A 1 158 HIS 158 533 533 HIS HIS A . n A 1 159 GLU 159 534 534 GLU GLU A . n A 1 160 ALA 160 535 535 ALA ALA A . n A 1 161 PHE 161 536 536 PHE PHE A . n A 1 162 LYS 162 537 537 LYS LYS A . n A 1 163 ASP 163 538 538 ASP ASP A . n A 1 164 GLU 164 539 539 GLU GLU A . n A 1 165 LEU 165 540 540 LEU LEU A . n A 1 166 LYS 166 541 541 LYS LYS A . n A 1 167 THR 167 542 542 THR THR A . n A 1 168 PHE 168 543 543 PHE PHE A . n A 1 169 ARG 169 544 544 ARG ARG A . n A 1 170 LEU 170 545 545 LEU LEU A . n A 1 171 LYS 171 546 546 LYS LYS A . n A 1 172 THR 172 547 547 THR THR A . n A 1 173 ARG 173 548 548 ARG ARG A . n A 1 174 SER 174 549 549 SER SER A . n A 1 175 TRP 175 550 550 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1001 1001 CL CL A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . C 3 HOH 49 49 49 HOH HOH A . C 3 HOH 50 50 50 HOH HOH A . C 3 HOH 51 51 51 HOH HOH A . C 3 HOH 52 52 52 HOH HOH A . C 3 HOH 53 53 53 HOH HOH A . C 3 HOH 54 54 54 HOH HOH A . C 3 HOH 55 55 55 HOH HOH A . C 3 HOH 56 56 56 HOH HOH A . C 3 HOH 57 57 57 HOH HOH A . C 3 HOH 58 58 58 HOH HOH A . C 3 HOH 59 59 59 HOH HOH A . C 3 HOH 60 60 60 HOH HOH A . C 3 HOH 61 61 61 HOH HOH A . C 3 HOH 62 62 62 HOH HOH A . C 3 HOH 63 63 63 HOH HOH A . C 3 HOH 64 64 64 HOH HOH A . C 3 HOH 65 65 65 HOH HOH A . C 3 HOH 66 66 66 HOH HOH A . C 3 HOH 67 67 67 HOH HOH A . C 3 HOH 68 68 68 HOH HOH A . C 3 HOH 69 69 69 HOH HOH A . C 3 HOH 70 70 70 HOH HOH A . C 3 HOH 71 71 71 HOH HOH A . C 3 HOH 72 72 72 HOH HOH A . C 3 HOH 73 73 73 HOH HOH A . C 3 HOH 74 74 74 HOH HOH A . C 3 HOH 75 75 75 HOH HOH A . C 3 HOH 76 76 76 HOH HOH A . C 3 HOH 77 77 77 HOH HOH A . C 3 HOH 78 78 78 HOH HOH A . C 3 HOH 79 79 79 HOH HOH A . C 3 HOH 80 80 80 HOH HOH A . C 3 HOH 81 81 81 HOH HOH A . C 3 HOH 82 82 82 HOH HOH A . C 3 HOH 83 83 83 HOH HOH A . C 3 HOH 84 84 84 HOH HOH A . C 3 HOH 85 85 85 HOH HOH A . C 3 HOH 86 86 86 HOH HOH A . C 3 HOH 87 87 87 HOH HOH A . C 3 HOH 88 88 88 HOH HOH A . C 3 HOH 89 89 89 HOH HOH A . C 3 HOH 90 90 90 HOH HOH A . C 3 HOH 91 91 91 HOH HOH A . C 3 HOH 92 92 92 HOH HOH A . C 3 HOH 93 93 93 HOH HOH A . C 3 HOH 94 94 94 HOH HOH A . C 3 HOH 95 95 95 HOH HOH A . C 3 HOH 96 96 96 HOH HOH A . C 3 HOH 97 97 97 HOH HOH A . C 3 HOH 98 98 98 HOH HOH A . C 3 HOH 99 99 99 HOH HOH A . C 3 HOH 100 100 100 HOH HOH A . C 3 HOH 101 101 101 HOH HOH A . C 3 HOH 102 102 102 HOH HOH A . C 3 HOH 103 103 103 HOH HOH A . C 3 HOH 104 104 104 HOH HOH A . C 3 HOH 105 105 105 HOH HOH A . C 3 HOH 106 106 106 HOH HOH A . C 3 HOH 107 107 107 HOH HOH A . C 3 HOH 108 108 108 HOH HOH A . C 3 HOH 109 109 109 HOH HOH A . C 3 HOH 110 110 110 HOH HOH A . C 3 HOH 111 111 111 HOH HOH A . C 3 HOH 112 112 112 HOH HOH A . C 3 HOH 113 113 113 HOH HOH A . C 3 HOH 114 114 114 HOH HOH A . C 3 HOH 115 115 115 HOH HOH A . C 3 HOH 116 116 116 HOH HOH A . C 3 HOH 117 117 117 HOH HOH A . C 3 HOH 118 118 118 HOH HOH A . C 3 HOH 119 119 119 HOH HOH A . C 3 HOH 120 120 120 HOH HOH A . C 3 HOH 121 121 121 HOH HOH A . C 3 HOH 122 122 122 HOH HOH A . C 3 HOH 123 123 123 HOH HOH A . C 3 HOH 124 124 124 HOH HOH A . C 3 HOH 125 125 125 HOH HOH A . C 3 HOH 126 126 126 HOH HOH A . C 3 HOH 127 127 127 HOH HOH A . C 3 HOH 128 128 128 HOH HOH A . C 3 HOH 129 129 129 HOH HOH A . C 3 HOH 130 130 130 HOH HOH A . C 3 HOH 131 131 131 HOH HOH A . C 3 HOH 132 132 132 HOH HOH A . C 3 HOH 133 133 133 HOH HOH A . C 3 HOH 134 134 134 HOH HOH A . C 3 HOH 135 135 135 HOH HOH A . C 3 HOH 136 136 136 HOH HOH A . C 3 HOH 137 137 137 HOH HOH A . C 3 HOH 138 138 138 HOH HOH A . C 3 HOH 139 139 139 HOH HOH A . C 3 HOH 140 140 140 HOH HOH A . C 3 HOH 141 141 141 HOH HOH A . C 3 HOH 142 142 142 HOH HOH A . C 3 HOH 143 143 143 HOH HOH A . C 3 HOH 144 144 144 HOH HOH A . C 3 HOH 145 145 145 HOH HOH A . C 3 HOH 146 146 146 HOH HOH A . C 3 HOH 147 147 147 HOH HOH A . C 3 HOH 148 148 148 HOH HOH A . C 3 HOH 149 149 149 HOH HOH A . C 3 HOH 150 150 150 HOH HOH A . C 3 HOH 151 151 151 HOH HOH A . C 3 HOH 152 152 152 HOH HOH A . C 3 HOH 153 153 153 HOH HOH A . C 3 HOH 154 154 154 HOH HOH A . C 3 HOH 155 155 155 HOH HOH A . C 3 HOH 156 156 156 HOH HOH A . C 3 HOH 157 157 157 HOH HOH A . C 3 HOH 158 158 158 HOH HOH A . C 3 HOH 159 159 159 HOH HOH A . C 3 HOH 160 160 160 HOH HOH A . C 3 HOH 161 161 161 HOH HOH A . C 3 HOH 162 162 162 HOH HOH A . C 3 HOH 163 163 163 HOH HOH A . C 3 HOH 164 164 164 HOH HOH A . C 3 HOH 165 165 165 HOH HOH A . C 3 HOH 166 166 166 HOH HOH A . C 3 HOH 167 167 167 HOH HOH A . C 3 HOH 168 168 168 HOH HOH A . C 3 HOH 169 169 169 HOH HOH A . C 3 HOH 170 170 170 HOH HOH A . C 3 HOH 171 171 171 HOH HOH A . C 3 HOH 172 172 172 HOH HOH A . C 3 HOH 173 173 173 HOH HOH A . C 3 HOH 174 174 174 HOH HOH A . C 3 HOH 175 175 175 HOH HOH A . C 3 HOH 176 176 176 HOH HOH A . C 3 HOH 177 177 177 HOH HOH A . C 3 HOH 178 178 178 HOH HOH A . C 3 HOH 179 179 179 HOH HOH A . C 3 HOH 180 180 180 HOH HOH A . C 3 HOH 181 181 181 HOH HOH A . C 3 HOH 182 182 182 HOH HOH A . C 3 HOH 183 183 183 HOH HOH A . C 3 HOH 184 184 184 HOH HOH A . C 3 HOH 185 185 185 HOH HOH A . C 3 HOH 186 186 186 HOH HOH A . C 3 HOH 187 187 187 HOH HOH A . C 3 HOH 188 188 188 HOH HOH A . C 3 HOH 189 189 189 HOH HOH A . C 3 HOH 190 190 190 HOH HOH A . C 3 HOH 191 191 191 HOH HOH A . C 3 HOH 192 192 192 HOH HOH A . C 3 HOH 193 193 193 HOH HOH A . C 3 HOH 194 194 194 HOH HOH A . C 3 HOH 195 195 195 HOH HOH A . C 3 HOH 196 196 196 HOH HOH A . C 3 HOH 197 197 197 HOH HOH A . C 3 HOH 198 198 198 HOH HOH A . C 3 HOH 199 199 199 HOH HOH A . C 3 HOH 200 200 200 HOH HOH A . C 3 HOH 201 201 201 HOH HOH A . C 3 HOH 202 202 202 HOH HOH A . C 3 HOH 203 203 203 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCS _pdbx_struct_mod_residue.label_seq_id 98 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCS _pdbx_struct_mod_residue.auth_seq_id 473 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'CYSTEINESULFONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2023-08-23 6 'Structure model' 1 5 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site 9 6 'Structure model' chem_comp_atom 10 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 6 'Structure model' '_chem_comp_atom.atom_id' 10 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 439 ? ? 80.88 -4.81 2 1 OCS A 473 ? ? -133.38 -148.06 3 1 PHE A 475 ? ? -139.23 -105.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 461 ? A CYS 86 2 1 Y 1 A SER 462 ? A SER 87 3 1 Y 1 A LEU 463 ? A LEU 88 4 1 Y 1 A ASP 464 ? A ASP 89 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 OCS N N N N 251 OCS CA C N R 252 OCS CB C N N 253 OCS SG S N N 254 OCS C C N N 255 OCS O O N N 256 OCS OXT O N N 257 OCS OD1 O N N 258 OCS OD2 O N N 259 OCS OD3 O N N 260 OCS H H N N 261 OCS H2 H N N 262 OCS HA H N N 263 OCS HB2 H N N 264 OCS HB3 H N N 265 OCS HXT H N N 266 OCS HD2 H N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PRO N N N N 291 PRO CA C N S 292 PRO C C N N 293 PRO O O N N 294 PRO CB C N N 295 PRO CG C N N 296 PRO CD C N N 297 PRO OXT O N N 298 PRO H H N N 299 PRO HA H N N 300 PRO HB2 H N N 301 PRO HB3 H N N 302 PRO HG2 H N N 303 PRO HG3 H N N 304 PRO HD2 H N N 305 PRO HD3 H N N 306 PRO HXT H N N 307 SER N N N N 308 SER CA C N S 309 SER C C N N 310 SER O O N N 311 SER CB C N N 312 SER OG O N N 313 SER OXT O N N 314 SER H H N N 315 SER H2 H N N 316 SER HA H N N 317 SER HB2 H N N 318 SER HB3 H N N 319 SER HG H N N 320 SER HXT H N N 321 THR N N N N 322 THR CA C N S 323 THR C C N N 324 THR O O N N 325 THR CB C N R 326 THR OG1 O N N 327 THR CG2 C N N 328 THR OXT O N N 329 THR H H N N 330 THR H2 H N N 331 THR HA H N N 332 THR HB H N N 333 THR HG1 H N N 334 THR HG21 H N N 335 THR HG22 H N N 336 THR HG23 H N N 337 THR HXT H N N 338 TRP N N N N 339 TRP CA C N S 340 TRP C C N N 341 TRP O O N N 342 TRP CB C N N 343 TRP CG C Y N 344 TRP CD1 C Y N 345 TRP CD2 C Y N 346 TRP NE1 N Y N 347 TRP CE2 C Y N 348 TRP CE3 C Y N 349 TRP CZ2 C Y N 350 TRP CZ3 C Y N 351 TRP CH2 C Y N 352 TRP OXT O N N 353 TRP H H N N 354 TRP H2 H N N 355 TRP HA H N N 356 TRP HB2 H N N 357 TRP HB3 H N N 358 TRP HD1 H N N 359 TRP HE1 H N N 360 TRP HE3 H N N 361 TRP HZ2 H N N 362 TRP HZ3 H N N 363 TRP HH2 H N N 364 TRP HXT H N N 365 TYR N N N N 366 TYR CA C N S 367 TYR C C N N 368 TYR O O N N 369 TYR CB C N N 370 TYR CG C Y N 371 TYR CD1 C Y N 372 TYR CD2 C Y N 373 TYR CE1 C Y N 374 TYR CE2 C Y N 375 TYR CZ C Y N 376 TYR OH O N N 377 TYR OXT O N N 378 TYR H H N N 379 TYR H2 H N N 380 TYR HA H N N 381 TYR HB2 H N N 382 TYR HB3 H N N 383 TYR HD1 H N N 384 TYR HD2 H N N 385 TYR HE1 H N N 386 TYR HE2 H N N 387 TYR HH H N N 388 TYR HXT H N N 389 VAL N N N N 390 VAL CA C N S 391 VAL C C N N 392 VAL O O N N 393 VAL CB C N N 394 VAL CG1 C N N 395 VAL CG2 C N N 396 VAL OXT O N N 397 VAL H H N N 398 VAL H2 H N N 399 VAL HA H N N 400 VAL HB H N N 401 VAL HG11 H N N 402 VAL HG12 H N N 403 VAL HG13 H N N 404 VAL HG21 H N N 405 VAL HG22 H N N 406 VAL HG23 H N N 407 VAL HXT H N N 408 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 OCS N CA sing N N 237 OCS N H sing N N 238 OCS N H2 sing N N 239 OCS CA CB sing N N 240 OCS CA C sing N N 241 OCS CA HA sing N N 242 OCS CB SG sing N N 243 OCS CB HB2 sing N N 244 OCS CB HB3 sing N N 245 OCS SG OD1 doub N N 246 OCS SG OD2 sing N N 247 OCS SG OD3 doub N N 248 OCS C O doub N N 249 OCS C OXT sing N N 250 OCS OXT HXT sing N N 251 OCS OD2 HD2 sing N N 252 PHE N CA sing N N 253 PHE N H sing N N 254 PHE N H2 sing N N 255 PHE CA C sing N N 256 PHE CA CB sing N N 257 PHE CA HA sing N N 258 PHE C O doub N N 259 PHE C OXT sing N N 260 PHE CB CG sing N N 261 PHE CB HB2 sing N N 262 PHE CB HB3 sing N N 263 PHE CG CD1 doub Y N 264 PHE CG CD2 sing Y N 265 PHE CD1 CE1 sing Y N 266 PHE CD1 HD1 sing N N 267 PHE CD2 CE2 doub Y N 268 PHE CD2 HD2 sing N N 269 PHE CE1 CZ doub Y N 270 PHE CE1 HE1 sing N N 271 PHE CE2 CZ sing Y N 272 PHE CE2 HE2 sing N N 273 PHE CZ HZ sing N N 274 PHE OXT HXT sing N N 275 PRO N CA sing N N 276 PRO N CD sing N N 277 PRO N H sing N N 278 PRO CA C sing N N 279 PRO CA CB sing N N 280 PRO CA HA sing N N 281 PRO C O doub N N 282 PRO C OXT sing N N 283 PRO CB CG sing N N 284 PRO CB HB2 sing N N 285 PRO CB HB3 sing N N 286 PRO CG CD sing N N 287 PRO CG HG2 sing N N 288 PRO CG HG3 sing N N 289 PRO CD HD2 sing N N 290 PRO CD HD3 sing N N 291 PRO OXT HXT sing N N 292 SER N CA sing N N 293 SER N H sing N N 294 SER N H2 sing N N 295 SER CA C sing N N 296 SER CA CB sing N N 297 SER CA HA sing N N 298 SER C O doub N N 299 SER C OXT sing N N 300 SER CB OG sing N N 301 SER CB HB2 sing N N 302 SER CB HB3 sing N N 303 SER OG HG sing N N 304 SER OXT HXT sing N N 305 THR N CA sing N N 306 THR N H sing N N 307 THR N H2 sing N N 308 THR CA C sing N N 309 THR CA CB sing N N 310 THR CA HA sing N N 311 THR C O doub N N 312 THR C OXT sing N N 313 THR CB OG1 sing N N 314 THR CB CG2 sing N N 315 THR CB HB sing N N 316 THR OG1 HG1 sing N N 317 THR CG2 HG21 sing N N 318 THR CG2 HG22 sing N N 319 THR CG2 HG23 sing N N 320 THR OXT HXT sing N N 321 TRP N CA sing N N 322 TRP N H sing N N 323 TRP N H2 sing N N 324 TRP CA C sing N N 325 TRP CA CB sing N N 326 TRP CA HA sing N N 327 TRP C O doub N N 328 TRP C OXT sing N N 329 TRP CB CG sing N N 330 TRP CB HB2 sing N N 331 TRP CB HB3 sing N N 332 TRP CG CD1 doub Y N 333 TRP CG CD2 sing Y N 334 TRP CD1 NE1 sing Y N 335 TRP CD1 HD1 sing N N 336 TRP CD2 CE2 doub Y N 337 TRP CD2 CE3 sing Y N 338 TRP NE1 CE2 sing Y N 339 TRP NE1 HE1 sing N N 340 TRP CE2 CZ2 sing Y N 341 TRP CE3 CZ3 doub Y N 342 TRP CE3 HE3 sing N N 343 TRP CZ2 CH2 doub Y N 344 TRP CZ2 HZ2 sing N N 345 TRP CZ3 CH2 sing Y N 346 TRP CZ3 HZ3 sing N N 347 TRP CH2 HH2 sing N N 348 TRP OXT HXT sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 VAL N CA sing N N 374 VAL N H sing N N 375 VAL N H2 sing N N 376 VAL CA C sing N N 377 VAL CA CB sing N N 378 VAL CA HA sing N N 379 VAL C O doub N N 380 VAL C OXT sing N N 381 VAL CB CG1 sing N N 382 VAL CB CG2 sing N N 383 VAL CB HB sing N N 384 VAL CG1 HG11 sing N N 385 VAL CG1 HG12 sing N N 386 VAL CG1 HG13 sing N N 387 VAL CG2 HG21 sing N N 388 VAL CG2 HG22 sing N N 389 VAL CG2 HG23 sing N N 390 VAL OXT HXT sing N N 391 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QB0 _pdbx_initial_refinement_model.details 'PDB ENTRY 1QB0' #