HEADER OXIDOREDUCTASE 25-JAN-05 1YNP TITLE ALDO-KETO REDUCTASE AKR11C1 FROM BACILLUS HALODURANS (APO FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AKR11C1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125; SOURCE 5 GENE: BH1011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALDO-KETO REDUCTASE, AKR11C1, NADPH, BACILLUS HALODURANS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MARQUARDT,D.KOSTREWA,F.K.WINKLER,X.D.LI REVDAT 6 13-MAR-24 1YNP 1 HETSYN REVDAT 5 29-JUL-20 1YNP 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 11-OCT-17 1YNP 1 REMARK REVDAT 3 13-JUL-11 1YNP 1 VERSN REVDAT 2 24-FEB-09 1YNP 1 VERSN REVDAT 1 06-DEC-05 1YNP 0 JRNL AUTH T.MARQUARDT,D.KOSTREWA,R.BALAKRISHNAN,A.GASPERINA,C.KAMBACH, JRNL AUTH 2 A.PODJARNY,F.K.WINKLER,G.K.BALENDIRAN,X.D.LI JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF AKR11C1 FROM BACILLUS JRNL TITL 2 HALODURANS: AN NADPH-DEPENDENT 4-HYDROXY-2,3-TRANS-NONENAL JRNL TITL 3 REDUCTASE JRNL REF J.MOL.BIOL. V. 354 304 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16242712 JRNL DOI 10.1016/J.JMB.2005.09.067 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 169110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 606 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 586 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.499 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4849 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6555 ; 1.691 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 5.710 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;34.234 ;23.891 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 887 ;12.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;12.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 721 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3601 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2348 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3301 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 465 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 94 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2887 ; 2.729 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4657 ; 3.723 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 5.065 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1897 ; 6.794 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4899 ; 3.141 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 587 ; 9.146 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4781 ; 6.530 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97784, 1.3783 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 38.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, LI2SO4, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.33450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.71350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.71350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.33450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 2 BIOLOGICAL UNITS IN THE ASU (CHAIN A AND CHAIN B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A 78 REMARK 465 ASN A 79 REMARK 465 ARG A 80 REMARK 465 PHE A 81 REMARK 465 GLU A 82 REMARK 465 GLN A 83 REMARK 465 GLY A 84 REMARK 465 LYS A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 TRP A 88 REMARK 465 TRP A 89 REMARK 465 TRP A 90 REMARK 465 ASP A 91 REMARK 465 PRO A 92 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 421 O HOH A 557 2.04 REMARK 500 OE1 GLU A 297 O HOH A 566 2.04 REMARK 500 NZ LYS B 29 O HOH B 599 2.06 REMARK 500 O HOH B 488 O HOH B 509 2.09 REMARK 500 OE1 GLN A 294 O HOH A 351 2.13 REMARK 500 NH1 ARG A 219 OD1 ASP A 221 2.15 REMARK 500 O HOH A 431 O HOH A 550 2.16 REMARK 500 O2 SO4 B 298 O HOH B 563 2.16 REMARK 500 O HOH B 430 O HOH B 528 2.18 REMARK 500 O HOH B 444 O HOH B 505 2.18 REMARK 500 OE1 GLN A 187 O HOH A 567 2.18 REMARK 500 OE1 GLU B 82 O HOH B 531 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A -1 C MET A 1 N 0.187 REMARK 500 HIS B -1 C MET B 1 N 0.307 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 HIS B -1 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 LYS B 3 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 67 26.99 -140.88 REMARK 500 LEU A 204 45.87 -100.49 REMARK 500 SER A 205 -155.42 -143.90 REMARK 500 LEU A 216 -128.64 53.56 REMARK 500 ALA A 246 3.28 -69.92 REMARK 500 THR B 47 -165.32 -126.04 REMARK 500 ARG B 67 30.90 -149.17 REMARK 500 LEU B 204 48.54 -103.90 REMARK 500 LEU B 216 -122.43 49.07 REMARK 500 ALA B 257 115.62 -162.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B -1 19.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 299 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 HOH A 342 O 116.9 REMARK 620 3 ILE B 143 O 111.1 117.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YNQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND COFACTOR NADPH DBREF 1YNP A 1 297 UNP Q9KE47 Q9KE47_BACHD 1 297 DBREF 1YNP B 1 297 UNP Q9KE47 Q9KE47_BACHD 1 297 SEQADV 1YNP MET A -20 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -19 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -18 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -17 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -16 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -15 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -14 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -13 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -12 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -11 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -10 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -9 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -8 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP LEU A -7 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP VAL A -6 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP PRO A -5 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP ARG A -4 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY A -3 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER A -2 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS A -1 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP MET B -20 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -19 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -18 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -17 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -16 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -15 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -14 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -13 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -12 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -11 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -10 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -9 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -8 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP LEU B -7 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP VAL B -6 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP PRO B -5 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP ARG B -4 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP GLY B -3 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP SER B -2 UNP Q9KE47 CLONING ARTIFACT SEQADV 1YNP HIS B -1 UNP Q9KE47 CLONING ARTIFACT SEQRES 1 A 317 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 317 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ARG GLN LEU SEQRES 3 A 317 GLY THR SER ASP LEU HIS VAL SER GLU LEU GLY PHE GLY SEQRES 4 A 317 CYS MET SER LEU GLY THR ASP GLU THR LYS ALA ARG ARG SEQRES 5 A 317 ILE MET ASP GLU VAL LEU GLU LEU GLY ILE ASN TYR LEU SEQRES 6 A 317 ASP THR ALA ASP LEU TYR ASN GLN GLY LEU ASN GLU GLN SEQRES 7 A 317 PHE VAL GLY LYS ALA LEU LYS GLY ARG ARG GLN ASP ILE SEQRES 8 A 317 ILE LEU ALA THR LYS VAL GLY ASN ARG PHE GLU GLN GLY SEQRES 9 A 317 LYS GLU GLY TRP TRP TRP ASP PRO SER LYS ALA TYR ILE SEQRES 10 A 317 LYS GLU ALA VAL LYS ASP SER LEU ARG ARG LEU GLN THR SEQRES 11 A 317 ASP TYR ILE ASP LEU TYR GLN LEU HIS GLY GLY THR ILE SEQRES 12 A 317 ASP ASP PRO ILE ASP GLU THR ILE GLU ALA PHE GLU GLU SEQRES 13 A 317 LEU LYS GLN GLU GLY VAL ILE ARG TYR TYR GLY ILE SER SEQRES 14 A 317 SER ILE ARG PRO ASN VAL ILE LYS GLU TYR LEU LYS ARG SEQRES 15 A 317 SER ASN ILE VAL SER ILE MET MET GLN TYR SER ILE LEU SEQRES 16 A 317 ASP ARG ARG PRO GLU GLU TRP PHE PRO LEU ILE GLN GLU SEQRES 17 A 317 HIS GLY VAL SER VAL VAL VAL ARG GLY PRO VAL ALA ARG SEQRES 18 A 317 GLY LEU LEU SER ARG ARG PRO LEU PRO GLU GLY GLU GLY SEQRES 19 A 317 TYR LEU ASN TYR ARG TYR ASP GLU LEU LYS LEU LEU ARG SEQRES 20 A 317 GLU SER LEU PRO THR ASP ARG PRO LEU HIS GLU LEU ALA SEQRES 21 A 317 LEU GLN TYR CYS LEU ALA HIS ASP VAL VAL ALA THR VAL SEQRES 22 A 317 ALA ALA GLY ALA SER SER ILE ASP GLN VAL LYS ALA ASN SEQRES 23 A 317 VAL GLN ALA VAL GLU ALA THR PRO LEU THR ALA GLU GLU SEQRES 24 A 317 ARG GLN HIS ILE GLN LYS LEU ALA LYS ALA ALA VAL TYR SEQRES 25 A 317 GLU GLN HIS ARG GLU SEQRES 1 B 317 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 317 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ARG GLN LEU SEQRES 3 B 317 GLY THR SER ASP LEU HIS VAL SER GLU LEU GLY PHE GLY SEQRES 4 B 317 CYS MET SER LEU GLY THR ASP GLU THR LYS ALA ARG ARG SEQRES 5 B 317 ILE MET ASP GLU VAL LEU GLU LEU GLY ILE ASN TYR LEU SEQRES 6 B 317 ASP THR ALA ASP LEU TYR ASN GLN GLY LEU ASN GLU GLN SEQRES 7 B 317 PHE VAL GLY LYS ALA LEU LYS GLY ARG ARG GLN ASP ILE SEQRES 8 B 317 ILE LEU ALA THR LYS VAL GLY ASN ARG PHE GLU GLN GLY SEQRES 9 B 317 LYS GLU GLY TRP TRP TRP ASP PRO SER LYS ALA TYR ILE SEQRES 10 B 317 LYS GLU ALA VAL LYS ASP SER LEU ARG ARG LEU GLN THR SEQRES 11 B 317 ASP TYR ILE ASP LEU TYR GLN LEU HIS GLY GLY THR ILE SEQRES 12 B 317 ASP ASP PRO ILE ASP GLU THR ILE GLU ALA PHE GLU GLU SEQRES 13 B 317 LEU LYS GLN GLU GLY VAL ILE ARG TYR TYR GLY ILE SER SEQRES 14 B 317 SER ILE ARG PRO ASN VAL ILE LYS GLU TYR LEU LYS ARG SEQRES 15 B 317 SER ASN ILE VAL SER ILE MET MET GLN TYR SER ILE LEU SEQRES 16 B 317 ASP ARG ARG PRO GLU GLU TRP PHE PRO LEU ILE GLN GLU SEQRES 17 B 317 HIS GLY VAL SER VAL VAL VAL ARG GLY PRO VAL ALA ARG SEQRES 18 B 317 GLY LEU LEU SER ARG ARG PRO LEU PRO GLU GLY GLU GLY SEQRES 19 B 317 TYR LEU ASN TYR ARG TYR ASP GLU LEU LYS LEU LEU ARG SEQRES 20 B 317 GLU SER LEU PRO THR ASP ARG PRO LEU HIS GLU LEU ALA SEQRES 21 B 317 LEU GLN TYR CYS LEU ALA HIS ASP VAL VAL ALA THR VAL SEQRES 22 B 317 ALA ALA GLY ALA SER SER ILE ASP GLN VAL LYS ALA ASN SEQRES 23 B 317 VAL GLN ALA VAL GLU ALA THR PRO LEU THR ALA GLU GLU SEQRES 24 B 317 ARG GLN HIS ILE GLN LYS LEU ALA LYS ALA ALA VAL TYR SEQRES 25 B 317 GLU GLN HIS ARG GLU HET GLC C 1 11 HET FRU C 2 12 HET NA A 299 1 HET SO4 A 300 5 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET GOL A 308 6 HET SO4 B 298 5 HET SO4 B 299 5 HET SO4 B 300 5 HET SO4 B 301 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLC C6 H12 O6 FORMUL 3 FRU C6 H12 O6 FORMUL 4 NA NA 1+ FORMUL 5 SO4 12(O4 S 2-) FORMUL 13 GOL C3 H8 O3 FORMUL 18 HOH *586(H2 O) HELIX 1 1 ASP A 26 LEU A 40 1 15 HELIX 2 2 ASN A 56 LYS A 65 1 10 HELIX 3 3 ARG A 67 ILE A 71 5 5 HELIX 4 4 SER A 93 GLN A 109 1 17 HELIX 5 5 PRO A 126 GLU A 140 1 15 HELIX 6 6 ARG A 152 SER A 163 1 12 HELIX 7 7 ARG A 177 GLU A 181 5 5 HELIX 8 8 TRP A 182 HIS A 189 1 8 HELIX 9 9 VAL A 199 LEU A 203 5 5 HELIX 10 10 ARG A 219 LEU A 230 1 12 HELIX 11 11 PRO A 235 ALA A 246 1 12 HELIX 12 12 SER A 259 GLU A 271 1 13 HELIX 13 13 THR A 276 ALA A 287 1 12 HELIX 14 14 MET B 21 GLY B 24 5 4 HELIX 15 15 ASP B 26 LEU B 40 1 15 HELIX 16 16 LEU B 50 GLN B 53 5 4 HELIX 17 17 GLY B 54 LYS B 65 1 12 HELIX 18 18 SER B 93 GLN B 109 1 17 HELIX 19 19 PRO B 126 GLU B 140 1 15 HELIX 20 20 ARG B 152 SER B 163 1 12 HELIX 21 21 ARG B 177 GLU B 181 5 5 HELIX 22 22 TRP B 182 HIS B 189 1 8 HELIX 23 23 ARG B 219 LEU B 230 1 12 HELIX 24 24 PRO B 235 ALA B 246 1 12 HELIX 25 25 SER B 259 GLU B 271 1 13 HELIX 26 26 THR B 276 ALA B 287 1 12 SHEET 1 A 2 LYS A 3 GLN A 5 0 SHEET 2 A 2 HIS A 12 SER A 14 -1 O VAL A 13 N ARG A 4 SHEET 1 B 7 TYR A 44 ASP A 46 0 SHEET 2 B 7 ILE A 72 VAL A 77 1 O ALA A 74 N LEU A 45 SHEET 3 B 7 ILE A 113 LEU A 118 1 O GLN A 117 N VAL A 77 SHEET 4 B 7 ILE A 143 SER A 149 1 O SER A 149 N LEU A 118 SHEET 5 B 7 SER A 167 GLN A 171 1 O MET A 169 N ILE A 148 SHEET 6 B 7 SER A 192 ARG A 196 1 O VAL A 194 N MET A 170 SHEET 7 B 7 VAL A 250 ALA A 254 1 O ALA A 254 N VAL A 195 SHEET 1 C 2 LYS B 3 GLN B 5 0 SHEET 2 C 2 HIS B 12 SER B 14 -1 O VAL B 13 N ARG B 4 SHEET 1 D 9 LEU B 16 GLY B 19 0 SHEET 2 D 9 TYR B 44 ASP B 46 1 O ASP B 46 N PHE B 18 SHEET 3 D 9 ILE B 72 VAL B 77 1 O ALA B 74 N LEU B 45 SHEET 4 D 9 ILE B 113 LEU B 118 1 O GLN B 117 N VAL B 77 SHEET 5 D 9 ILE B 143 SER B 149 1 O SER B 149 N LEU B 118 SHEET 6 D 9 SER B 167 GLN B 171 1 O MET B 169 N ILE B 148 SHEET 7 D 9 SER B 192 ARG B 196 1 O VAL B 194 N MET B 170 SHEET 8 D 9 VAL B 250 ALA B 255 1 O ALA B 254 N VAL B 195 SHEET 9 D 9 LEU B 16 GLY B 19 1 N GLY B 17 O VAL B 253 SHEET 1 E 2 ASN B 79 ARG B 80 0 SHEET 2 E 2 TRP B 89 TRP B 90 -1 O TRP B 89 N ARG B 80 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.42 LINK OE2 GLU A 181 NA NA A 299 1555 1555 2.64 LINK NA NA A 299 O HOH A 342 1555 1555 2.69 LINK NA NA A 299 O ILE B 143 1555 1555 2.84 CRYST1 74.669 86.566 105.427 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009500 0.00000