data_1YO5 # _entry.id 1YO5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YO5 pdb_00001yo5 10.2210/pdb1yo5/pdb NDB PD0627 ? ? RCSB RCSB031741 ? ? WWPDB D_1000031741 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YO5 _pdbx_database_status.recvd_initial_deposition_date 2005-01-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, Y.' 1 'Feng, L.' 2 'Said, M.' 3 'Balderman, S.' 4 'Fayazi, Z.' 5 'Liu, Y.' 6 'Ghosh, D.' 7 'Gulick, A.M.' 8 # _citation.id primary _citation.title ;Analysis of the 2.0 A Crystal Structure of the Protein-DNA Complex of the Human PDEF Ets Domain Bound to the Prostate Specific Antigen Regulatory Site ; _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 7095 _citation.page_last 7106 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15882048 _citation.pdbx_database_id_DOI 10.1021/bi047352t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, Y.' 1 ? primary 'Feng, L.' 2 ? primary 'Said, M.' 3 ? primary 'Balderman, S.' 4 ? primary 'Fayazi, Z.' 5 ? primary 'Liu, Y.' 6 ? primary 'Ghosh, D.' 7 ? primary 'Gulick, A.M.' 8 ? # _cell.entry_id 1YO5 _cell.length_a 36.160 _cell.length_b 71.476 _cell.length_c 39.136 _cell.angle_alpha 90.00 _cell.angle_beta 113.45 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YO5 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.cell_setting monoclinic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Enhancer site of Prostate Specific Antigen Promoter Region' 4046.645 1 ? ? 'Sense Strand of E site' ? 2 polymer syn 'Enhancer site of Prostate Specific Antigen Promoter Region' 3895.563 1 ? ? 'Antisense Strand of E site' ? 3 polymer man 'SAM pointed domain containing ets transcription factor' 11587.606 1 ? ? 'PDEF C-terminal Ets domain' ? 4 water nat water 18.015 156 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DC)(DA)(DG)(DG)(DA)(DT)(DG)(DT)(DG)(DT)' TAGCAGGATGTGT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DA)(DC)(DA)(DT)(DC)(DC)(DT)(DG)(DC)(DT)(DA)' ACACATCCTGCTA B ? 3 'polypeptide(L)' no no ;GSLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGII RKPDISQRLVYQFVHPI ; ;GSLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGII RKPDISQRLVYQFVHPI ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DG n 1 7 DG n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DG n 1 13 DT n 2 1 DA n 2 2 DC n 2 3 DA n 2 4 DC n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DG n 2 11 DC n 2 12 DT n 2 13 DA n 3 1 GLY n 3 2 SER n 3 3 LEU n 3 4 ASP n 3 5 ALA n 3 6 LEU n 3 7 GLY n 3 8 SER n 3 9 GLN n 3 10 PRO n 3 11 ILE n 3 12 HIS n 3 13 LEU n 3 14 TRP n 3 15 GLN n 3 16 PHE n 3 17 LEU n 3 18 LYS n 3 19 GLU n 3 20 LEU n 3 21 LEU n 3 22 LEU n 3 23 LYS n 3 24 PRO n 3 25 HIS n 3 26 SER n 3 27 TYR n 3 28 GLY n 3 29 ARG n 3 30 PHE n 3 31 ILE n 3 32 ARG n 3 33 TRP n 3 34 LEU n 3 35 ASN n 3 36 LYS n 3 37 GLU n 3 38 LYS n 3 39 GLY n 3 40 ILE n 3 41 PHE n 3 42 LYS n 3 43 ILE n 3 44 GLU n 3 45 ASP n 3 46 SER n 3 47 ALA n 3 48 GLN n 3 49 VAL n 3 50 ALA n 3 51 ARG n 3 52 LEU n 3 53 TRP n 3 54 GLY n 3 55 ILE n 3 56 ARG n 3 57 LYS n 3 58 ASN n 3 59 ARG n 3 60 PRO n 3 61 ALA n 3 62 MET n 3 63 ASN n 3 64 TYR n 3 65 ASP n 3 66 LYS n 3 67 LEU n 3 68 SER n 3 69 ARG n 3 70 SER n 3 71 ILE n 3 72 ARG n 3 73 GLN n 3 74 TYR n 3 75 TYR n 3 76 LYS n 3 77 LYS n 3 78 GLY n 3 79 ILE n 3 80 ILE n 3 81 ARG n 3 82 LYS n 3 83 PRO n 3 84 ASP n 3 85 ILE n 3 86 SER n 3 87 GLN n 3 88 ARG n 3 89 LEU n 3 90 VAL n 3 91 TYR n 3 92 GLN n 3 93 PHE n 3 94 VAL n 3 95 HIS n 3 96 PRO n 3 97 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PDEF _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (Lambda DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-GST-T-A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in humans. DNA substrate for protein is synthesized chemically and purified through chromatography' 2 1 sample ? ? ? ? ? 'This sequence occurs naturally in humans. DNA substrate for protein is synthesized chemically and purified through chromatography' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 3 UNP O95238_HUMAN O95238 247 ;QPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQR LVYQFVHPI ; ? 2 1 PDB 1YO5 1YO5 ? ? ? 3 2 PDB 1YO5 1YO5 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YO5 C 9 ? 97 ? O95238 247 ? 335 ? 247 335 2 2 1YO5 A 1 ? 13 ? 1YO5 1 ? 13 ? 1 13 3 3 1YO5 B 1 ? 13 ? 1YO5 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YO5 GLY C 1 ? UNP O95238 ? ? 'SEE REMARK 999' 239 1 1 1YO5 SER C 2 ? UNP O95238 ? ? 'SEE REMARK 999' 240 2 1 1YO5 LEU C 3 ? UNP O95238 ? ? 'SEE REMARK 999' 241 3 1 1YO5 ASP C 4 ? UNP O95238 ? ? 'SEE REMARK 999' 242 4 1 1YO5 ALA C 5 ? UNP O95238 ? ? 'SEE REMARK 999' 243 5 1 1YO5 LEU C 6 ? UNP O95238 ? ? 'SEE REMARK 999' 244 6 1 1YO5 GLY C 7 ? UNP O95238 ? ? 'SEE REMARK 999' 245 7 1 1YO5 SER C 8 ? UNP O95238 ? ? 'SEE REMARK 999' 246 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YO5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 46.6 _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'PEG 4000, Citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 Citrate ? ? ? 1 3 2 'PEG 4000' ? ? ? 1 4 2 Citrate, ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-08-09 _diffrn_detector.details 'Osmic Max-FLUX confocal' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1YO5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 35.9 _reflns.number_all 11755 _reflns.number_obs 11176 _reflns.percent_possible_obs 94.7 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.1 _reflns.B_iso_Wilson_estimate 25.73 _reflns.pdbx_redundancy 3.74 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 85.4 _reflns_shell.Rmerge_I_obs 0.23 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YO5 _refine.ls_number_reflns_obs 11799 _refine.ls_number_reflns_all 11799 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.90 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 94.72 _refine.ls_R_factor_obs 0.2049 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20321 _refine.ls_R_factor_R_free 0.23889 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 561 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 25.592 _refine.aniso_B[1][1] 3.12 _refine.aniso_B[2][2] -2.84 _refine.aniso_B[3][3] -1.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.96 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1DUX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.217 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.109 _refine.overall_SU_B 3.742 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 759 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1442 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 35.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1371 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.314 2.437 ? 1956 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.223 5.000 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.841 21.316 ? 38 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.293 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.731 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 207 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 851 'X-RAY DIFFRACTION' ? r_nbd_refined 0.181 0.200 ? 539 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 862 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.134 0.200 ? 158 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.150 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.114 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 0.604 1.500 ? 459 'X-RAY DIFFRACTION' ? r_mcangle_it 1.052 2.000 ? 712 'X-RAY DIFFRACTION' ? r_scbond_it 1.150 3.000 ? 1218 'X-RAY DIFFRACTION' ? r_scangle_it 1.817 4.500 ? 1244 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 726 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 84.72 _refine_ls_shell.R_factor_R_free 0.287 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YO5 _struct.title ;Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YO5 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'ETS; PROTEIN-DNA Complex; DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS C 12 ? LYS C 23 ? HIS C 250 LYS C 261 1 ? 12 HELX_P HELX_P2 2 LYS C 23 ? GLY C 28 ? LYS C 261 GLY C 266 1 ? 6 HELX_P HELX_P3 3 ASP C 45 ? ASN C 58 ? ASP C 283 ASN C 296 1 ? 14 HELX_P HELX_P4 4 ASN C 63 ? TYR C 74 ? ASN C 301 TYR C 312 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 1 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 2 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 2 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 3 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 3 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 3 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 4 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 4 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 4 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 5 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 5 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 6 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 7 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 7 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 7 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 8 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 8 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 9 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 9 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 10 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 10 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 10 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 11 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 11 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 12 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 12 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 12 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 13 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 13 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 31 ? ASN C 35 ? ILE C 269 ASN C 273 A 2 ILE C 40 ? ILE C 43 ? ILE C 278 ILE C 281 A 3 VAL C 90 ? PHE C 93 ? VAL C 328 PHE C 331 A 4 ILE C 80 ? ARG C 81 ? ILE C 318 ARG C 319 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU C 34 ? N LEU C 272 O ILE C 40 ? O ILE C 278 A 2 3 N PHE C 41 ? N PHE C 279 O TYR C 91 ? O TYR C 329 A 3 4 O GLN C 92 ? O GLN C 330 N ARG C 81 ? N ARG C 319 # _atom_sites.entry_id 1YO5 _atom_sites.fract_transf_matrix[1][1] 0.027655 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011996 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013991 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027852 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DT 13 13 13 DT T A . n B 2 1 DA 1 1 1 DA A B . n B 2 2 DC 2 2 2 DC C B . n B 2 3 DA 3 3 3 DA A B . n B 2 4 DC 4 4 4 DC C B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DT 6 6 6 DT T B . n B 2 7 DC 7 7 7 DC C B . n B 2 8 DC 8 8 8 DC C B . n B 2 9 DT 9 9 9 DT T B . n B 2 10 DG 10 10 10 DG G B . n B 2 11 DC 11 11 11 DC C B . n B 2 12 DT 12 12 12 DT T B . n B 2 13 DA 13 13 13 DA A B . n C 3 1 GLY 1 239 ? ? ? C . n C 3 2 SER 2 240 ? ? ? C . n C 3 3 LEU 3 241 ? ? ? C . n C 3 4 ASP 4 242 ? ? ? C . n C 3 5 ALA 5 243 ? ? ? C . n C 3 6 LEU 6 244 ? ? ? C . n C 3 7 GLY 7 245 ? ? ? C . n C 3 8 SER 8 246 ? ? ? C . n C 3 9 GLN 9 247 247 GLN GLN C . n C 3 10 PRO 10 248 248 PRO PRO C . n C 3 11 ILE 11 249 249 ILE ILE C . n C 3 12 HIS 12 250 250 HIS HIS C . n C 3 13 LEU 13 251 251 LEU LEU C . n C 3 14 TRP 14 252 252 TRP TRP C . n C 3 15 GLN 15 253 253 GLN GLN C . n C 3 16 PHE 16 254 254 PHE PHE C . n C 3 17 LEU 17 255 255 LEU LEU C . n C 3 18 LYS 18 256 256 LYS LYS C . n C 3 19 GLU 19 257 257 GLU GLU C . n C 3 20 LEU 20 258 258 LEU LEU C . n C 3 21 LEU 21 259 259 LEU LEU C . n C 3 22 LEU 22 260 260 LEU LEU C . n C 3 23 LYS 23 261 261 LYS LYS C . n C 3 24 PRO 24 262 262 PRO PRO C . n C 3 25 HIS 25 263 263 HIS HIS C . n C 3 26 SER 26 264 264 SER SER C . n C 3 27 TYR 27 265 265 TYR TYR C . n C 3 28 GLY 28 266 266 GLY GLY C . n C 3 29 ARG 29 267 267 ARG ARG C . n C 3 30 PHE 30 268 268 PHE PHE C . n C 3 31 ILE 31 269 269 ILE ILE C . n C 3 32 ARG 32 270 270 ARG ARG C . n C 3 33 TRP 33 271 271 TRP TRP C . n C 3 34 LEU 34 272 272 LEU LEU C . n C 3 35 ASN 35 273 273 ASN ASN C . n C 3 36 LYS 36 274 274 LYS LYS C . n C 3 37 GLU 37 275 275 GLU GLU C . n C 3 38 LYS 38 276 276 LYS LYS C . n C 3 39 GLY 39 277 277 GLY GLY C . n C 3 40 ILE 40 278 278 ILE ILE C . n C 3 41 PHE 41 279 279 PHE PHE C . n C 3 42 LYS 42 280 280 LYS LYS C . n C 3 43 ILE 43 281 281 ILE ILE C . n C 3 44 GLU 44 282 282 GLU GLU C . n C 3 45 ASP 45 283 283 ASP ASP C . n C 3 46 SER 46 284 284 SER SER C . n C 3 47 ALA 47 285 285 ALA ALA C . n C 3 48 GLN 48 286 286 GLN GLN C . n C 3 49 VAL 49 287 287 VAL VAL C . n C 3 50 ALA 50 288 288 ALA ALA C . n C 3 51 ARG 51 289 289 ARG ARG C . n C 3 52 LEU 52 290 290 LEU LEU C . n C 3 53 TRP 53 291 291 TRP TRP C . n C 3 54 GLY 54 292 292 GLY GLY C . n C 3 55 ILE 55 293 293 ILE ILE C . n C 3 56 ARG 56 294 294 ARG ARG C . n C 3 57 LYS 57 295 295 LYS LYS C . n C 3 58 ASN 58 296 296 ASN ASN C . n C 3 59 ARG 59 297 297 ARG ARG C . n C 3 60 PRO 60 298 298 PRO PRO C . n C 3 61 ALA 61 299 299 ALA ALA C . n C 3 62 MET 62 300 300 MET MET C . n C 3 63 ASN 63 301 301 ASN ASN C . n C 3 64 TYR 64 302 302 TYR TYR C . n C 3 65 ASP 65 303 303 ASP ASP C . n C 3 66 LYS 66 304 304 LYS LYS C . n C 3 67 LEU 67 305 305 LEU LEU C . n C 3 68 SER 68 306 306 SER SER C . n C 3 69 ARG 69 307 307 ARG ARG C . n C 3 70 SER 70 308 308 SER SER C . n C 3 71 ILE 71 309 309 ILE ILE C . n C 3 72 ARG 72 310 310 ARG ARG C . n C 3 73 GLN 73 311 311 GLN GLN C . n C 3 74 TYR 74 312 312 TYR TYR C . n C 3 75 TYR 75 313 313 TYR TYR C . n C 3 76 LYS 76 314 314 LYS LYS C . n C 3 77 LYS 77 315 315 LYS LYS C . n C 3 78 GLY 78 316 316 GLY GLY C . n C 3 79 ILE 79 317 317 ILE ILE C . n C 3 80 ILE 80 318 318 ILE ILE C . n C 3 81 ARG 81 319 319 ARG ARG C . n C 3 82 LYS 82 320 320 LYS LYS C . n C 3 83 PRO 83 321 321 PRO PRO C . n C 3 84 ASP 84 322 322 ASP ASP C . n C 3 85 ILE 85 323 323 ILE ILE C . n C 3 86 SER 86 324 324 SER SER C . n C 3 87 GLN 87 325 325 GLN GLN C . n C 3 88 ARG 88 326 326 ARG ARG C . n C 3 89 LEU 89 327 327 LEU LEU C . n C 3 90 VAL 90 328 328 VAL VAL C . n C 3 91 TYR 91 329 329 TYR TYR C . n C 3 92 GLN 92 330 330 GLN GLN C . n C 3 93 PHE 93 331 331 PHE PHE C . n C 3 94 VAL 94 332 332 VAL VAL C . n C 3 95 HIS 95 333 333 HIS HIS C . n C 3 96 PRO 96 334 334 PRO PRO C . n C 3 97 ILE 97 335 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 30 30 HOH HOH A . D 4 HOH 2 39 39 HOH HOH A . D 4 HOH 3 41 41 HOH HOH A . D 4 HOH 4 42 42 HOH HOH A . D 4 HOH 5 43 43 HOH HOH A . D 4 HOH 6 44 44 HOH HOH A . D 4 HOH 7 45 45 HOH HOH A . D 4 HOH 8 46 46 HOH HOH A . D 4 HOH 9 55 55 HOH HOH A . D 4 HOH 10 56 56 HOH HOH A . D 4 HOH 11 57 57 HOH HOH A . D 4 HOH 12 59 59 HOH HOH A . D 4 HOH 13 62 62 HOH HOH A . D 4 HOH 14 63 63 HOH HOH A . D 4 HOH 15 65 65 HOH HOH A . D 4 HOH 16 66 66 HOH HOH A . D 4 HOH 17 68 68 HOH HOH A . D 4 HOH 18 69 69 HOH HOH A . D 4 HOH 19 71 71 HOH HOH A . D 4 HOH 20 72 72 HOH HOH A . D 4 HOH 21 75 75 HOH HOH A . D 4 HOH 22 101 101 HOH HOH A . D 4 HOH 23 108 108 HOH HOH A . D 4 HOH 24 109 109 HOH HOH A . D 4 HOH 25 113 113 HOH HOH A . D 4 HOH 26 114 114 HOH HOH A . D 4 HOH 27 115 115 HOH HOH A . D 4 HOH 28 116 116 HOH HOH A . D 4 HOH 29 117 117 HOH HOH A . D 4 HOH 30 118 118 HOH HOH A . D 4 HOH 31 119 119 HOH HOH A . D 4 HOH 32 120 120 HOH HOH A . D 4 HOH 33 146 146 HOH HOH A . E 4 HOH 1 14 1 HOH HOH B . E 4 HOH 2 15 2 HOH HOH B . E 4 HOH 3 16 22 HOH HOH B . E 4 HOH 4 17 24 HOH HOH B . E 4 HOH 5 18 27 HOH HOH B . E 4 HOH 6 19 34 HOH HOH B . E 4 HOH 7 20 47 HOH HOH B . E 4 HOH 8 21 48 HOH HOH B . E 4 HOH 9 22 50 HOH HOH B . E 4 HOH 10 23 51 HOH HOH B . E 4 HOH 11 24 52 HOH HOH B . E 4 HOH 12 25 53 HOH HOH B . E 4 HOH 13 26 60 HOH HOH B . E 4 HOH 14 27 61 HOH HOH B . E 4 HOH 15 28 67 HOH HOH B . E 4 HOH 16 29 70 HOH HOH B . E 4 HOH 17 30 73 HOH HOH B . E 4 HOH 18 31 74 HOH HOH B . E 4 HOH 19 32 76 HOH HOH B . E 4 HOH 20 33 77 HOH HOH B . E 4 HOH 21 34 78 HOH HOH B . E 4 HOH 22 35 79 HOH HOH B . E 4 HOH 23 36 80 HOH HOH B . E 4 HOH 24 37 81 HOH HOH B . E 4 HOH 25 38 82 HOH HOH B . E 4 HOH 26 39 83 HOH HOH B . E 4 HOH 27 40 84 HOH HOH B . E 4 HOH 28 41 85 HOH HOH B . E 4 HOH 29 42 86 HOH HOH B . E 4 HOH 30 43 87 HOH HOH B . E 4 HOH 31 44 97 HOH HOH B . E 4 HOH 32 45 111 HOH HOH B . E 4 HOH 33 46 121 HOH HOH B . E 4 HOH 34 47 122 HOH HOH B . E 4 HOH 35 48 124 HOH HOH B . E 4 HOH 36 49 125 HOH HOH B . E 4 HOH 37 50 126 HOH HOH B . E 4 HOH 38 51 127 HOH HOH B . E 4 HOH 39 52 128 HOH HOH B . E 4 HOH 40 53 129 HOH HOH B . E 4 HOH 41 54 130 HOH HOH B . E 4 HOH 42 55 131 HOH HOH B . E 4 HOH 43 56 147 HOH HOH B . E 4 HOH 44 57 148 HOH HOH B . E 4 HOH 45 58 149 HOH HOH B . E 4 HOH 46 59 150 HOH HOH B . F 4 HOH 1 3 3 HOH HOH C . F 4 HOH 2 4 4 HOH HOH C . F 4 HOH 3 5 5 HOH HOH C . F 4 HOH 4 6 6 HOH HOH C . F 4 HOH 5 7 7 HOH HOH C . F 4 HOH 6 8 8 HOH HOH C . F 4 HOH 7 9 9 HOH HOH C . F 4 HOH 8 10 10 HOH HOH C . F 4 HOH 9 11 11 HOH HOH C . F 4 HOH 10 12 12 HOH HOH C . F 4 HOH 11 13 13 HOH HOH C . F 4 HOH 12 14 14 HOH HOH C . F 4 HOH 13 15 15 HOH HOH C . F 4 HOH 14 16 16 HOH HOH C . F 4 HOH 15 17 17 HOH HOH C . F 4 HOH 16 18 18 HOH HOH C . F 4 HOH 17 19 19 HOH HOH C . F 4 HOH 18 20 20 HOH HOH C . F 4 HOH 19 21 21 HOH HOH C . F 4 HOH 20 23 23 HOH HOH C . F 4 HOH 21 25 25 HOH HOH C . F 4 HOH 22 26 26 HOH HOH C . F 4 HOH 23 28 28 HOH HOH C . F 4 HOH 24 29 29 HOH HOH C . F 4 HOH 25 31 31 HOH HOH C . F 4 HOH 26 32 32 HOH HOH C . F 4 HOH 27 33 33 HOH HOH C . F 4 HOH 28 35 35 HOH HOH C . F 4 HOH 29 36 36 HOH HOH C . F 4 HOH 30 37 37 HOH HOH C . F 4 HOH 31 38 38 HOH HOH C . F 4 HOH 32 40 40 HOH HOH C . F 4 HOH 33 49 49 HOH HOH C . F 4 HOH 34 54 54 HOH HOH C . F 4 HOH 35 58 58 HOH HOH C . F 4 HOH 36 64 64 HOH HOH C . F 4 HOH 37 88 88 HOH HOH C . F 4 HOH 38 89 89 HOH HOH C . F 4 HOH 39 90 90 HOH HOH C . F 4 HOH 40 91 91 HOH HOH C . F 4 HOH 41 92 92 HOH HOH C . F 4 HOH 42 93 93 HOH HOH C . F 4 HOH 43 94 94 HOH HOH C . F 4 HOH 44 95 95 HOH HOH C . F 4 HOH 45 96 96 HOH HOH C . F 4 HOH 46 98 98 HOH HOH C . F 4 HOH 47 99 99 HOH HOH C . F 4 HOH 48 100 100 HOH HOH C . F 4 HOH 49 102 102 HOH HOH C . F 4 HOH 50 103 103 HOH HOH C . F 4 HOH 51 104 104 HOH HOH C . F 4 HOH 52 105 105 HOH HOH C . F 4 HOH 53 106 106 HOH HOH C . F 4 HOH 54 107 107 HOH HOH C . F 4 HOH 55 110 110 HOH HOH C . F 4 HOH 56 112 112 HOH HOH C . F 4 HOH 57 123 123 HOH HOH C . F 4 HOH 58 132 132 HOH HOH C . F 4 HOH 59 133 133 HOH HOH C . F 4 HOH 60 134 134 HOH HOH C . F 4 HOH 61 135 135 HOH HOH C . F 4 HOH 62 136 136 HOH HOH C . F 4 HOH 63 137 137 HOH HOH C . F 4 HOH 64 138 138 HOH HOH C . F 4 HOH 65 139 139 HOH HOH C . F 4 HOH 66 140 140 HOH HOH C . F 4 HOH 67 141 141 HOH HOH C . F 4 HOH 68 142 142 HOH HOH C . F 4 HOH 69 143 143 HOH HOH C . F 4 HOH 70 144 144 HOH HOH C . F 4 HOH 71 145 145 HOH HOH C . F 4 HOH 72 151 151 HOH HOH C . F 4 HOH 73 152 152 HOH HOH C . F 4 HOH 74 153 153 HOH HOH C . F 4 HOH 75 154 154 HOH HOH C . F 4 HOH 76 155 155 HOH HOH C . F 4 HOH 77 156 156 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MOLREP phasing . ? 3 REFMAC refinement 5.2 ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 3 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 57 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.89 108.30 2.59 0.30 N 2 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.44 108.30 2.14 0.30 N 3 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.15 108.30 2.85 0.30 N 4 1 "C3'" A DT 9 ? ? "O3'" A DT 9 ? ? P A DG 10 ? ? 128.30 119.70 8.60 1.20 Y 5 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 110.69 108.30 2.39 0.30 N 6 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 103.02 108.00 -4.98 0.70 N 7 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 110.53 108.30 2.23 0.30 N 8 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.89 108.30 2.59 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 333 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -99.78 _pdbx_validate_torsion.psi -156.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C GLN 247 ? CG ? C GLN 9 CG 2 1 Y 1 C GLN 247 ? CD ? C GLN 9 CD 3 1 Y 1 C GLN 247 ? OE1 ? C GLN 9 OE1 4 1 Y 1 C GLN 247 ? NE2 ? C GLN 9 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY 239 ? C GLY 1 2 1 Y 1 C SER 240 ? C SER 2 3 1 Y 1 C LEU 241 ? C LEU 3 4 1 Y 1 C ASP 242 ? C ASP 4 5 1 Y 1 C ALA 243 ? C ALA 5 6 1 Y 1 C LEU 244 ? C LEU 6 7 1 Y 1 C GLY 245 ? C GLY 7 8 1 Y 1 C SER 246 ? C SER 8 9 1 Y 1 C ILE 335 ? C ILE 97 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 VAL N N N N 484 VAL CA C N S 485 VAL C C N N 486 VAL O O N N 487 VAL CB C N N 488 VAL CG1 C N N 489 VAL CG2 C N N 490 VAL OXT O N N 491 VAL H H N N 492 VAL H2 H N N 493 VAL HA H N N 494 VAL HB H N N 495 VAL HG11 H N N 496 VAL HG12 H N N 497 VAL HG13 H N N 498 VAL HG21 H N N 499 VAL HG22 H N N 500 VAL HG23 H N N 501 VAL HXT H N N 502 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 TRP N CA sing N N 426 TRP N H sing N N 427 TRP N H2 sing N N 428 TRP CA C sing N N 429 TRP CA CB sing N N 430 TRP CA HA sing N N 431 TRP C O doub N N 432 TRP C OXT sing N N 433 TRP CB CG sing N N 434 TRP CB HB2 sing N N 435 TRP CB HB3 sing N N 436 TRP CG CD1 doub Y N 437 TRP CG CD2 sing Y N 438 TRP CD1 NE1 sing Y N 439 TRP CD1 HD1 sing N N 440 TRP CD2 CE2 doub Y N 441 TRP CD2 CE3 sing Y N 442 TRP NE1 CE2 sing Y N 443 TRP NE1 HE1 sing N N 444 TRP CE2 CZ2 sing Y N 445 TRP CE3 CZ3 doub Y N 446 TRP CE3 HE3 sing N N 447 TRP CZ2 CH2 doub Y N 448 TRP CZ2 HZ2 sing N N 449 TRP CZ3 CH2 sing Y N 450 TRP CZ3 HZ3 sing N N 451 TRP CH2 HH2 sing N N 452 TRP OXT HXT sing N N 453 TYR N CA sing N N 454 TYR N H sing N N 455 TYR N H2 sing N N 456 TYR CA C sing N N 457 TYR CA CB sing N N 458 TYR CA HA sing N N 459 TYR C O doub N N 460 TYR C OXT sing N N 461 TYR CB CG sing N N 462 TYR CB HB2 sing N N 463 TYR CB HB3 sing N N 464 TYR CG CD1 doub Y N 465 TYR CG CD2 sing Y N 466 TYR CD1 CE1 sing Y N 467 TYR CD1 HD1 sing N N 468 TYR CD2 CE2 doub Y N 469 TYR CD2 HD2 sing N N 470 TYR CE1 CZ doub Y N 471 TYR CE1 HE1 sing N N 472 TYR CE2 CZ sing Y N 473 TYR CE2 HE2 sing N N 474 TYR CZ OH sing N N 475 TYR OH HH sing N N 476 TYR OXT HXT sing N N 477 VAL N CA sing N N 478 VAL N H sing N N 479 VAL N H2 sing N N 480 VAL CA C sing N N 481 VAL CA CB sing N N 482 VAL CA HA sing N N 483 VAL C O doub N N 484 VAL C OXT sing N N 485 VAL CB CG1 sing N N 486 VAL CB CG2 sing N N 487 VAL CB HB sing N N 488 VAL CG1 HG11 sing N N 489 VAL CG1 HG12 sing N N 490 VAL CG1 HG13 sing N N 491 VAL CG2 HG21 sing N N 492 VAL CG2 HG22 sing N N 493 VAL CG2 HG23 sing N N 494 VAL OXT HXT sing N N 495 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1YO5 'double helix' 1YO5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 -0.425 -0.027 0.161 13.234 -6.245 2.392 1 A_DT1:DA13_B A 1 ? B 13 ? 20 1 1 A DA 2 1_555 B DT 12 1_555 -0.024 -0.111 0.194 15.118 -9.443 4.328 2 A_DA2:DT12_B A 2 ? B 12 ? 20 1 1 A DG 3 1_555 B DC 11 1_555 -0.267 -0.113 0.223 8.029 -8.671 1.190 3 A_DG3:DC11_B A 3 ? B 11 ? 19 1 1 A DC 4 1_555 B DG 10 1_555 0.340 -0.289 -0.117 -6.971 -9.451 0.534 4 A_DC4:DG10_B A 4 ? B 10 ? 19 1 1 A DA 5 1_555 B DT 9 1_555 0.157 -0.130 0.019 -10.247 6.331 -1.518 5 A_DA5:DT9_B A 5 ? B 9 ? 20 1 1 A DG 6 1_555 B DC 8 1_555 -0.191 0.001 0.389 19.008 0.912 2.541 6 A_DG6:DC8_B A 6 ? B 8 ? 19 1 1 A DG 7 1_555 B DC 7 1_555 -0.298 -0.074 -0.034 4.491 -13.693 1.941 7 A_DG7:DC7_B A 7 ? B 7 ? 19 1 1 A DA 8 1_555 B DT 6 1_555 0.127 -0.077 -0.019 -0.556 -11.839 5.735 8 A_DA8:DT6_B A 8 ? B 6 ? 20 1 1 A DT 9 1_555 B DA 5 1_555 0.049 -0.065 0.079 -1.906 -12.607 6.323 9 A_DT9:DA5_B A 9 ? B 5 ? 20 1 1 A DG 10 1_555 B DC 4 1_555 -0.270 -0.172 0.006 -14.335 -11.303 -0.486 10 A_DG10:DC4_B A 10 ? B 4 ? 19 1 1 A DT 11 1_555 B DA 3 1_555 0.024 0.028 0.296 -16.578 -6.010 2.457 11 A_DT11:DA3_B A 11 ? B 3 ? 20 1 1 A DG 12 1_555 B DC 2 1_555 -0.427 -0.036 0.198 -0.062 -7.621 2.355 12 A_DG12:DC2_B A 12 ? B 2 ? 19 1 1 A DT 13 1_555 B DA 1 1_555 0.057 -0.203 0.386 -0.652 -8.858 -0.509 13 A_DT13:DA1_B A 13 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DA 2 1_555 B DT 12 1_555 1.018 -0.050 3.211 3.499 4.380 35.585 -0.701 -1.152 3.265 7.112 -5.682 36.009 1 AA_DT1DA2:DT12DA13_BB A 1 ? B 13 ? A 2 ? B 12 ? 1 A DA 2 1_555 B DT 12 1_555 A DG 3 1_555 B DC 11 1_555 0.098 -0.917 3.440 -2.452 1.164 31.676 -1.898 -0.648 3.388 2.129 4.482 31.789 2 AA_DA2DG3:DC11DT12_BB A 2 ? B 12 ? A 3 ? B 11 ? 1 A DG 3 1_555 B DC 11 1_555 A DC 4 1_555 B DG 10 1_555 -0.198 -1.427 3.620 3.098 2.396 35.851 -2.675 0.799 3.492 3.878 -5.015 36.058 3 AA_DG3DC4:DG10DC11_BB A 3 ? B 11 ? A 4 ? B 10 ? 1 A DC 4 1_555 B DG 10 1_555 A DA 5 1_555 B DT 9 1_555 -0.804 -0.536 3.297 -3.162 8.903 32.881 -2.319 0.868 3.112 15.338 5.448 34.175 4 AA_DC4DA5:DT9DG10_BB A 4 ? B 10 ? A 5 ? B 9 ? 1 A DA 5 1_555 B DT 9 1_555 A DG 6 1_555 B DC 8 1_555 0.730 -0.662 2.717 -4.624 6.646 23.875 -3.045 -2.736 2.273 15.505 10.788 25.192 5 AA_DA5DG6:DC8DT9_BB A 5 ? B 9 ? A 6 ? B 8 ? 1 A DG 6 1_555 B DC 8 1_555 A DG 7 1_555 B DC 7 1_555 -1.180 -1.239 3.598 -3.012 6.630 35.101 -3.044 1.451 3.401 10.848 4.928 35.825 6 AA_DG6DG7:DC7DC8_BB A 6 ? B 8 ? A 7 ? B 7 ? 1 A DG 7 1_555 B DC 7 1_555 A DA 8 1_555 B DT 6 1_555 -0.189 -0.417 3.338 0.902 -0.137 36.524 -0.646 0.428 3.334 -0.218 -1.439 36.535 7 AA_DG7DA8:DT6DC7_BB A 7 ? B 7 ? A 8 ? B 6 ? 1 A DA 8 1_555 B DT 6 1_555 A DT 9 1_555 B DA 5 1_555 0.030 -0.683 3.255 0.455 3.634 26.664 -2.382 0.050 3.136 7.832 -0.981 26.910 8 AA_DA8DT9:DA5DT6_BB A 8 ? B 6 ? A 9 ? B 5 ? 1 A DT 9 1_555 B DA 5 1_555 A DG 10 1_555 B DC 4 1_555 -0.411 -0.276 3.528 -5.543 4.318 43.849 -0.798 -0.013 3.512 5.738 7.366 44.381 9 AA_DT9DG10:DC4DA5_BB A 9 ? B 5 ? A 10 ? B 4 ? 1 A DG 10 1_555 B DC 4 1_555 A DT 11 1_555 B DA 3 1_555 -0.712 -0.950 3.343 -0.463 -1.857 27.988 -1.507 1.356 3.409 -3.835 0.957 28.052 10 AA_DG10DT11:DA3DC4_BB A 10 ? B 4 ? A 11 ? B 3 ? 1 A DT 11 1_555 B DA 3 1_555 A DG 12 1_555 B DC 2 1_555 0.098 0.182 2.966 -1.549 8.952 26.832 -1.527 -0.530 2.866 18.626 3.223 28.302 11 AA_DT11DG12:DC2DA3_BB A 11 ? B 3 ? A 12 ? B 2 ? 1 A DG 12 1_555 B DC 2 1_555 A DT 13 1_555 B DA 1 1_555 -0.613 -0.677 3.301 -1.117 5.771 31.351 -2.276 0.913 3.149 10.562 2.045 31.884 12 AA_DG12DT13:DA1DC2_BB A 12 ? B 2 ? A 13 ? B 1 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DUX _pdbx_initial_refinement_model.details ? #