data_1YOA # _entry.id 1YOA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YOA pdb_00001yoa 10.2210/pdb1yoa/pdb RCSB RCSB031746 ? ? WWPDB D_1000031746 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-27 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YOA _pdbx_database_status.recvd_initial_deposition_date 2005-01-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1WGB 'The same protein apo-enzyme' unspecified TargetDB ttk003001382.2 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Imagawa, T.' 1 'Tsuge, H.' 2 'Sugimoto, Y.' 3 'Utsunomiya, H.' 4 'Yokoyama, S.' 5 'Kuramitsu, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Crystal structure of a flavoenzyme TTHA0420 from Thermus thermophilus HB8' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Imagawa, T.' 1 ? primary 'Tsuge, H.' 2 ? primary 'Sugimoto, Y.' 3 ? primary 'Utsunomiya, H.' 4 ? primary 'Yokoyama, S.' 5 ? primary 'Kuramitsu, S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative flavoprotein' 17750.268 1 ? ? ? ? 2 non-polymer syn 'FLAVIN-ADENINE DINUCLEOTIDE' 785.550 1 ? ? ? ? 3 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 4 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQ DFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG ; _entity_poly.pdbx_seq_one_letter_code_can ;MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQ DFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001382.2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN-ADENINE DINUCLEOTIDE' FAD 3 'FLAVIN MONONUCLEOTIDE' FMN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 LEU n 1 4 GLU n 1 5 ALA n 1 6 LYS n 1 7 LYS n 1 8 LYS n 1 9 VAL n 1 10 LEU n 1 11 ARG n 1 12 SER n 1 13 PHE n 1 14 THR n 1 15 TYR n 1 16 GLY n 1 17 LEU n 1 18 TYR n 1 19 VAL n 1 20 LEU n 1 21 THR n 1 22 ALA n 1 23 LYS n 1 24 ASP n 1 25 GLY n 1 26 ASP n 1 27 GLU n 1 28 VAL n 1 29 ALA n 1 30 ALA n 1 31 GLY n 1 32 THR n 1 33 VAL n 1 34 ASN n 1 35 TRP n 1 36 VAL n 1 37 THR n 1 38 GLN n 1 39 ALA n 1 40 SER n 1 41 PHE n 1 42 GLN n 1 43 PRO n 1 44 PRO n 1 45 LEU n 1 46 VAL n 1 47 ALA n 1 48 VAL n 1 49 GLY n 1 50 LEU n 1 51 LYS n 1 52 ARG n 1 53 ASP n 1 54 SER n 1 55 HIS n 1 56 LEU n 1 57 HIS n 1 58 ALA n 1 59 LEU n 1 60 VAL n 1 61 GLU n 1 62 ARG n 1 63 THR n 1 64 GLY n 1 65 LYS n 1 66 LEU n 1 67 ALA n 1 68 LEU n 1 69 MET n 1 70 THR n 1 71 LEU n 1 72 ALA n 1 73 HIS n 1 74 ASP n 1 75 GLN n 1 76 LYS n 1 77 ALA n 1 78 ILE n 1 79 ALA n 1 80 GLN n 1 81 ASP n 1 82 PHE n 1 83 PHE n 1 84 LYS n 1 85 PRO n 1 86 THR n 1 87 VAL n 1 88 ARG n 1 89 GLU n 1 90 GLY n 1 91 ASP n 1 92 ARG n 1 93 LEU n 1 94 ASN n 1 95 GLY n 1 96 HIS n 1 97 PRO n 1 98 PHE n 1 99 GLU n 1 100 PRO n 1 101 SER n 1 102 PRO n 1 103 THR n 1 104 PHE n 1 105 GLY n 1 106 LEU n 1 107 PRO n 1 108 LEU n 1 109 LEU n 1 110 THR n 1 111 GLU n 1 112 LEU n 1 113 PRO n 1 114 TYR n 1 115 TRP n 1 116 LEU n 1 117 GLU n 1 118 ALA n 1 119 GLU n 1 120 VAL n 1 121 ARG n 1 122 HIS n 1 123 LEU n 1 124 TYR n 1 125 PRO n 1 126 GLY n 1 127 GLY n 1 128 ASP n 1 129 HIS n 1 130 SER n 1 131 LEU n 1 132 VAL n 1 133 VAL n 1 134 ALA n 1 135 GLU n 1 136 VAL n 1 137 VAL n 1 138 GLU n 1 139 ALA n 1 140 GLY n 1 141 VAL n 1 142 ARG n 1 143 ARG n 1 144 GLU n 1 145 GLU n 1 146 LYS n 1 147 PRO n 1 148 LEU n 1 149 VAL n 1 150 MET n 1 151 TRP n 1 152 ASP n 1 153 THR n 1 154 GLY n 1 155 TRP n 1 156 PHE n 1 157 TYR n 1 158 GLY n 1 159 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FAD non-polymer . 'FLAVIN-ADENINE DINUCLEOTIDE' ? 'C27 H33 N9 O15 P2' 785.550 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 HIS 129 129 129 HIS HIS A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 MET 150 150 150 MET MET A . n A 1 151 TRP 151 151 151 TRP TRP A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 GLY 159 159 159 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD 1 401 401 FAD FAD A . C 3 FMN 1 402 402 FMN FMN A . D 4 HOH 1 403 1 HOH HOH A . D 4 HOH 2 404 2 HOH HOH A . D 4 HOH 3 405 3 HOH HOH A . D 4 HOH 4 406 4 HOH HOH A . D 4 HOH 5 407 5 HOH HOH A . D 4 HOH 6 408 6 HOH HOH A . D 4 HOH 7 409 7 HOH HOH A . D 4 HOH 8 410 8 HOH HOH A . D 4 HOH 9 411 9 HOH HOH A . D 4 HOH 10 412 11 HOH HOH A . D 4 HOH 11 413 12 HOH HOH A . D 4 HOH 12 414 13 HOH HOH A . D 4 HOH 13 415 14 HOH HOH A . D 4 HOH 14 416 15 HOH HOH A . D 4 HOH 15 417 16 HOH HOH A . D 4 HOH 16 418 17 HOH HOH A . D 4 HOH 17 419 18 HOH HOH A . D 4 HOH 18 420 19 HOH HOH A . D 4 HOH 19 421 20 HOH HOH A . D 4 HOH 20 422 21 HOH HOH A . D 4 HOH 21 423 22 HOH HOH A . D 4 HOH 22 424 23 HOH HOH A . D 4 HOH 23 425 24 HOH HOH A . D 4 HOH 24 426 25 HOH HOH A . D 4 HOH 25 427 26 HOH HOH A . D 4 HOH 26 428 27 HOH HOH A . D 4 HOH 27 429 28 HOH HOH A . D 4 HOH 28 430 29 HOH HOH A . D 4 HOH 29 431 30 HOH HOH A . D 4 HOH 30 432 31 HOH HOH A . D 4 HOH 31 433 32 HOH HOH A . D 4 HOH 32 434 33 HOH HOH A . D 4 HOH 33 435 34 HOH HOH A . D 4 HOH 34 436 35 HOH HOH A . D 4 HOH 35 437 36 HOH HOH A . D 4 HOH 36 438 37 HOH HOH A . D 4 HOH 37 439 38 HOH HOH A . D 4 HOH 38 440 39 HOH HOH A . D 4 HOH 39 441 40 HOH HOH A . D 4 HOH 40 442 41 HOH HOH A . D 4 HOH 41 443 42 HOH HOH A . D 4 HOH 42 444 43 HOH HOH A . D 4 HOH 43 445 44 HOH HOH A . D 4 HOH 44 446 45 HOH HOH A . D 4 HOH 45 447 47 HOH HOH A . D 4 HOH 46 448 48 HOH HOH A . D 4 HOH 47 449 49 HOH HOH A . D 4 HOH 48 450 50 HOH HOH A . D 4 HOH 49 451 51 HOH HOH A . D 4 HOH 50 452 52 HOH HOH A . D 4 HOH 51 453 53 HOH HOH A . D 4 HOH 52 454 54 HOH HOH A . D 4 HOH 53 455 55 HOH HOH A . D 4 HOH 54 456 56 HOH HOH A . D 4 HOH 55 457 57 HOH HOH A . D 4 HOH 56 458 58 HOH HOH A . D 4 HOH 57 459 59 HOH HOH A . D 4 HOH 58 460 60 HOH HOH A . D 4 HOH 59 461 61 HOH HOH A . D 4 HOH 60 462 62 HOH HOH A . D 4 HOH 61 463 63 HOH HOH A . D 4 HOH 62 464 64 HOH HOH A . D 4 HOH 63 465 65 HOH HOH A . D 4 HOH 64 466 66 HOH HOH A . D 4 HOH 65 467 67 HOH HOH A . D 4 HOH 66 468 68 HOH HOH A . D 4 HOH 67 469 69 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1YOA _cell.length_a 132.966 _cell.length_b 132.966 _cell.length_c 132.966 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YOA _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YOA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'PEG400, ammonium sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-10-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 1YOA _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 95.35 _reflns.number_all 16153 _reflns.number_obs 16153 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.11 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 41.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.292 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 43.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1568 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YOA _refine.ls_number_reflns_obs 15335 _refine.ls_number_reflns_all 16159 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.54 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.2013 _refine.ls_R_factor_all 0.201 _refine.ls_R_factor_R_work 0.19989 _refine.ls_R_factor_R_free 0.22761 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 813 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 20.486 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.147 _refine.pdbx_overall_ESU_R_Free 0.133 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 2.588 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1255 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1406 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 35.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1381 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1216 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.510 2.031 ? 1894 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.850 3.000 ? 2824 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.934 5.000 ? 158 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 202 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1473 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.007 0.020 ? 267 'X-RAY DIFFRACTION' ? r_nbd_refined 0.196 0.200 ? 214 'X-RAY DIFFRACTION' ? r_nbd_other 0.249 0.200 ? 1339 'X-RAY DIFFRACTION' ? r_nbtor_other 0.085 0.200 ? 811 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 74 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.242 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.300 0.200 ? 85 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.380 0.200 ? 8 'X-RAY DIFFRACTION' ? r_mcbond_it 0.861 1.500 ? 791 'X-RAY DIFFRACTION' ? r_mcangle_it 1.636 2.000 ? 1271 'X-RAY DIFFRACTION' ? r_scbond_it 2.620 3.000 ? 590 'X-RAY DIFFRACTION' ? r_scangle_it 4.323 4.500 ? 623 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1088 _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YOA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YOA _struct.title 'Crystal structure of a probable flavoprotein from Thermus thermophilus HB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YOA _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'flavoprotein, HB8, FAD, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SL73_THET8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQ DFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession Q5SL73 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YOA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SL73 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8130 ? 1 MORE -63 ? 1 'SSA (A^2)' 12260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 43_555 -x+1/2,-z+1/2,-y+1/2 -1.0000000000 0.0000000000 0.0000000000 66.4830000000 0.0000000000 0.0000000000 -1.0000000000 66.4830000000 0.0000000000 -1.0000000000 0.0000000000 66.4830000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? ARG A 11 ? ASN A 2 ARG A 11 1 ? 10 HELX_P HELX_P2 2 SER A 54 ? GLY A 64 ? SER A 54 GLY A 64 1 ? 11 HELX_P HELX_P3 3 GLN A 75 ? PHE A 82 ? GLN A 75 PHE A 82 1 ? 8 HELX_P HELX_P4 4 VAL A 149 ? GLY A 154 ? VAL A 149 GLY A 154 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 42 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 42 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 43 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 43 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -12.43 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 27 ? VAL A 33 ? GLU A 27 VAL A 33 A 2 TYR A 18 ? ASP A 24 ? TYR A 18 ASP A 24 A 3 LYS A 65 ? THR A 70 ? LYS A 65 THR A 70 A 4 TYR A 114 ? TYR A 124 ? TYR A 114 TYR A 124 A 5 HIS A 129 ? VAL A 141 ? HIS A 129 VAL A 141 A 6 LEU A 45 ? LYS A 51 ? LEU A 45 LYS A 51 A 7 VAL A 36 ? SER A 40 ? VAL A 36 SER A 40 B 1 ARG A 88 ? GLU A 89 ? ARG A 88 GLU A 89 B 2 ARG A 92 ? LEU A 93 ? ARG A 92 LEU A 93 B 3 HIS A 96 ? PRO A 100 ? HIS A 96 PRO A 100 B 4 PRO A 107 ? LEU A 109 ? PRO A 107 LEU A 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 31 ? O GLY A 31 N LEU A 20 ? N LEU A 20 A 2 3 N THR A 21 ? N THR A 21 O ALA A 67 ? O ALA A 67 A 3 4 N LEU A 66 ? N LEU A 66 O ALA A 118 ? O ALA A 118 A 4 5 N HIS A 122 ? N HIS A 122 O VAL A 133 ? O VAL A 133 A 5 6 O VAL A 132 ? O VAL A 132 N VAL A 48 ? N VAL A 48 A 6 7 O ALA A 47 ? O ALA A 47 N THR A 37 ? N THR A 37 B 1 2 N GLU A 89 ? N GLU A 89 O ARG A 92 ? O ARG A 92 B 2 3 N LEU A 93 ? N LEU A 93 O HIS A 96 ? O HIS A 96 B 3 4 N GLU A 99 ? N GLU A 99 O LEU A 108 ? O LEU A 108 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FAD 401 ? 23 'BINDING SITE FOR RESIDUE FAD A 401' AC2 Software A FMN 402 ? 11 'BINDING SITE FOR RESIDUE FMN A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 ALA A 29 ? ALA A 29 . ? 1_555 ? 2 AC1 23 ALA A 30 ? ALA A 30 . ? 1_555 ? 3 AC1 23 GLY A 31 ? GLY A 31 . ? 1_555 ? 4 AC1 23 THR A 32 ? THR A 32 . ? 1_555 ? 5 AC1 23 VAL A 33 ? VAL A 33 . ? 1_555 ? 6 AC1 23 ASN A 34 ? ASN A 34 . ? 1_555 ? 7 AC1 23 TRP A 35 ? TRP A 35 . ? 1_555 ? 8 AC1 23 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 23 LEU A 50 ? LEU A 50 . ? 1_555 ? 10 AC1 23 LYS A 51 ? LYS A 51 . ? 1_555 ? 11 AC1 23 HIS A 55 ? HIS A 55 . ? 1_555 ? 12 AC1 23 PHE A 82 ? PHE A 82 . ? 1_555 ? 13 AC1 23 PHE A 83 ? PHE A 83 . ? 1_555 ? 14 AC1 23 PRO A 85 ? PRO A 85 . ? 1_555 ? 15 AC1 23 THR A 86 ? THR A 86 . ? 1_555 ? 16 AC1 23 GLU A 144 ? GLU A 144 . ? 23_555 ? 17 AC1 23 GLU A 145 ? GLU A 145 . ? 23_555 ? 18 AC1 23 MET A 150 ? MET A 150 . ? 1_555 ? 19 AC1 23 TYR A 157 ? TYR A 157 . ? 1_555 ? 20 AC1 23 HOH D . ? HOH A 419 . ? 1_555 ? 21 AC1 23 HOH D . ? HOH A 424 . ? 23_555 ? 22 AC1 23 HOH D . ? HOH A 449 . ? 1_555 ? 23 AC1 23 HOH D . ? HOH A 456 . ? 1_555 ? 24 AC2 11 ARG A 11 ? ARG A 11 . ? 1_555 ? 25 AC2 11 ARG A 11 ? ARG A 11 . ? 22_565 ? 26 AC2 11 PHE A 41 ? PHE A 41 . ? 43_555 ? 27 AC2 11 LYS A 51 ? LYS A 51 . ? 1_555 ? 28 AC2 11 PHE A 156 ? PHE A 156 . ? 1_555 ? 29 AC2 11 PHE A 156 ? PHE A 156 . ? 22_565 ? 30 AC2 11 TYR A 157 ? TYR A 157 . ? 1_555 ? 31 AC2 11 GLY A 158 ? GLY A 158 . ? 1_555 ? 32 AC2 11 HOH D . ? HOH A 446 . ? 1_555 ? 33 AC2 11 HOH D . ? HOH A 459 . ? 1_555 ? 34 AC2 11 HOH D . ? HOH A 468 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N6A _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 FAD _pdbx_validate_close_contact.auth_seq_id_1 401 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 456 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N3A _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 FAD _pdbx_validate_symm_contact.auth_seq_id_1 401 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 424 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 23_555 _pdbx_validate_symm_contact.dist 1.77 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 24 ? ? CG A ASP 24 ? ? OD2 A ASP 24 ? ? 124.40 118.30 6.10 0.90 N 2 1 CB A ASP 128 ? ? CG A ASP 128 ? ? OD2 A ASP 128 ? ? 124.37 118.30 6.07 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 40 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 173.87 _pdbx_validate_torsion.psi 150.59 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 FAD PA P N R 74 FAD O1A O N N 75 FAD O2A O N N 76 FAD O5B O N N 77 FAD C5B C N N 78 FAD C4B C N R 79 FAD O4B O N N 80 FAD C3B C N S 81 FAD O3B O N N 82 FAD C2B C N R 83 FAD O2B O N N 84 FAD C1B C N R 85 FAD N9A N Y N 86 FAD C8A C Y N 87 FAD N7A N Y N 88 FAD C5A C Y N 89 FAD C6A C Y N 90 FAD N6A N N N 91 FAD N1A N Y N 92 FAD C2A C Y N 93 FAD N3A N Y N 94 FAD C4A C Y N 95 FAD N1 N N N 96 FAD C2 C N N 97 FAD O2 O N N 98 FAD N3 N N N 99 FAD C4 C N N 100 FAD O4 O N N 101 FAD C4X C N N 102 FAD N5 N N N 103 FAD C5X C Y N 104 FAD C6 C Y N 105 FAD C7 C Y N 106 FAD C7M C N N 107 FAD C8 C Y N 108 FAD C8M C N N 109 FAD C9 C Y N 110 FAD C9A C Y N 111 FAD N10 N N N 112 FAD C10 C N N 113 FAD "C1'" C N N 114 FAD "C2'" C N S 115 FAD "O2'" O N N 116 FAD "C3'" C N S 117 FAD "O3'" O N N 118 FAD "C4'" C N R 119 FAD "O4'" O N N 120 FAD "C5'" C N N 121 FAD "O5'" O N N 122 FAD P P N R 123 FAD O1P O N N 124 FAD O2P O N N 125 FAD O3P O N N 126 FAD HOA2 H N N 127 FAD H51A H N N 128 FAD H52A H N N 129 FAD H4B H N N 130 FAD H3B H N N 131 FAD HO3A H N N 132 FAD H2B H N N 133 FAD HO2A H N N 134 FAD H1B H N N 135 FAD H8A H N N 136 FAD H61A H N N 137 FAD H62A H N N 138 FAD H2A H N N 139 FAD HN3 H N N 140 FAD H6 H N N 141 FAD HM71 H N N 142 FAD HM72 H N N 143 FAD HM73 H N N 144 FAD HM81 H N N 145 FAD HM82 H N N 146 FAD HM83 H N N 147 FAD H9 H N N 148 FAD "H1'1" H N N 149 FAD "H1'2" H N N 150 FAD "H2'" H N N 151 FAD "HO2'" H N N 152 FAD "H3'" H N N 153 FAD "HO3'" H N N 154 FAD "H4'" H N N 155 FAD "HO4'" H N N 156 FAD "H5'1" H N N 157 FAD "H5'2" H N N 158 FAD HOP2 H N N 159 FMN N1 N N N 160 FMN C2 C N N 161 FMN O2 O N N 162 FMN N3 N N N 163 FMN C4 C N N 164 FMN O4 O N N 165 FMN C4A C N N 166 FMN N5 N N N 167 FMN C5A C Y N 168 FMN C6 C Y N 169 FMN C7 C Y N 170 FMN C7M C N N 171 FMN C8 C Y N 172 FMN C8M C N N 173 FMN C9 C Y N 174 FMN C9A C Y N 175 FMN N10 N N N 176 FMN C10 C N N 177 FMN "C1'" C N N 178 FMN "C2'" C N S 179 FMN "O2'" O N N 180 FMN "C3'" C N S 181 FMN "O3'" O N N 182 FMN "C4'" C N R 183 FMN "O4'" O N N 184 FMN "C5'" C N N 185 FMN "O5'" O N N 186 FMN P P N N 187 FMN O1P O N N 188 FMN O2P O N N 189 FMN O3P O N N 190 FMN HN3 H N N 191 FMN H6 H N N 192 FMN HM71 H N N 193 FMN HM72 H N N 194 FMN HM73 H N N 195 FMN HM81 H N N 196 FMN HM82 H N N 197 FMN HM83 H N N 198 FMN H9 H N N 199 FMN "H1'1" H N N 200 FMN "H1'2" H N N 201 FMN "H2'" H N N 202 FMN "HO2'" H N N 203 FMN "H3'" H N N 204 FMN "HO3'" H N N 205 FMN "H4'" H N N 206 FMN "HO4'" H N N 207 FMN "H5'1" H N N 208 FMN "H5'2" H N N 209 FMN HOP2 H N N 210 FMN HOP3 H N N 211 GLN N N N N 212 GLN CA C N S 213 GLN C C N N 214 GLN O O N N 215 GLN CB C N N 216 GLN CG C N N 217 GLN CD C N N 218 GLN OE1 O N N 219 GLN NE2 N N N 220 GLN OXT O N N 221 GLN H H N N 222 GLN H2 H N N 223 GLN HA H N N 224 GLN HB2 H N N 225 GLN HB3 H N N 226 GLN HG2 H N N 227 GLN HG3 H N N 228 GLN HE21 H N N 229 GLN HE22 H N N 230 GLN HXT H N N 231 GLU N N N N 232 GLU CA C N S 233 GLU C C N N 234 GLU O O N N 235 GLU CB C N N 236 GLU CG C N N 237 GLU CD C N N 238 GLU OE1 O N N 239 GLU OE2 O N N 240 GLU OXT O N N 241 GLU H H N N 242 GLU H2 H N N 243 GLU HA H N N 244 GLU HB2 H N N 245 GLU HB3 H N N 246 GLU HG2 H N N 247 GLU HG3 H N N 248 GLU HE2 H N N 249 GLU HXT H N N 250 GLY N N N N 251 GLY CA C N N 252 GLY C C N N 253 GLY O O N N 254 GLY OXT O N N 255 GLY H H N N 256 GLY H2 H N N 257 GLY HA2 H N N 258 GLY HA3 H N N 259 GLY HXT H N N 260 HIS N N N N 261 HIS CA C N S 262 HIS C C N N 263 HIS O O N N 264 HIS CB C N N 265 HIS CG C Y N 266 HIS ND1 N Y N 267 HIS CD2 C Y N 268 HIS CE1 C Y N 269 HIS NE2 N Y N 270 HIS OXT O N N 271 HIS H H N N 272 HIS H2 H N N 273 HIS HA H N N 274 HIS HB2 H N N 275 HIS HB3 H N N 276 HIS HD1 H N N 277 HIS HD2 H N N 278 HIS HE1 H N N 279 HIS HE2 H N N 280 HIS HXT H N N 281 HOH O O N N 282 HOH H1 H N N 283 HOH H2 H N N 284 ILE N N N N 285 ILE CA C N S 286 ILE C C N N 287 ILE O O N N 288 ILE CB C N S 289 ILE CG1 C N N 290 ILE CG2 C N N 291 ILE CD1 C N N 292 ILE OXT O N N 293 ILE H H N N 294 ILE H2 H N N 295 ILE HA H N N 296 ILE HB H N N 297 ILE HG12 H N N 298 ILE HG13 H N N 299 ILE HG21 H N N 300 ILE HG22 H N N 301 ILE HG23 H N N 302 ILE HD11 H N N 303 ILE HD12 H N N 304 ILE HD13 H N N 305 ILE HXT H N N 306 LEU N N N N 307 LEU CA C N S 308 LEU C C N N 309 LEU O O N N 310 LEU CB C N N 311 LEU CG C N N 312 LEU CD1 C N N 313 LEU CD2 C N N 314 LEU OXT O N N 315 LEU H H N N 316 LEU H2 H N N 317 LEU HA H N N 318 LEU HB2 H N N 319 LEU HB3 H N N 320 LEU HG H N N 321 LEU HD11 H N N 322 LEU HD12 H N N 323 LEU HD13 H N N 324 LEU HD21 H N N 325 LEU HD22 H N N 326 LEU HD23 H N N 327 LEU HXT H N N 328 LYS N N N N 329 LYS CA C N S 330 LYS C C N N 331 LYS O O N N 332 LYS CB C N N 333 LYS CG C N N 334 LYS CD C N N 335 LYS CE C N N 336 LYS NZ N N N 337 LYS OXT O N N 338 LYS H H N N 339 LYS H2 H N N 340 LYS HA H N N 341 LYS HB2 H N N 342 LYS HB3 H N N 343 LYS HG2 H N N 344 LYS HG3 H N N 345 LYS HD2 H N N 346 LYS HD3 H N N 347 LYS HE2 H N N 348 LYS HE3 H N N 349 LYS HZ1 H N N 350 LYS HZ2 H N N 351 LYS HZ3 H N N 352 LYS HXT H N N 353 MET N N N N 354 MET CA C N S 355 MET C C N N 356 MET O O N N 357 MET CB C N N 358 MET CG C N N 359 MET SD S N N 360 MET CE C N N 361 MET OXT O N N 362 MET H H N N 363 MET H2 H N N 364 MET HA H N N 365 MET HB2 H N N 366 MET HB3 H N N 367 MET HG2 H N N 368 MET HG3 H N N 369 MET HE1 H N N 370 MET HE2 H N N 371 MET HE3 H N N 372 MET HXT H N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 FAD PA O1A doub N N 70 FAD PA O2A sing N N 71 FAD PA O5B sing N N 72 FAD PA O3P sing N N 73 FAD O2A HOA2 sing N N 74 FAD O5B C5B sing N N 75 FAD C5B C4B sing N N 76 FAD C5B H51A sing N N 77 FAD C5B H52A sing N N 78 FAD C4B O4B sing N N 79 FAD C4B C3B sing N N 80 FAD C4B H4B sing N N 81 FAD O4B C1B sing N N 82 FAD C3B O3B sing N N 83 FAD C3B C2B sing N N 84 FAD C3B H3B sing N N 85 FAD O3B HO3A sing N N 86 FAD C2B O2B sing N N 87 FAD C2B C1B sing N N 88 FAD C2B H2B sing N N 89 FAD O2B HO2A sing N N 90 FAD C1B N9A sing N N 91 FAD C1B H1B sing N N 92 FAD N9A C8A sing Y N 93 FAD N9A C4A sing Y N 94 FAD C8A N7A doub Y N 95 FAD C8A H8A sing N N 96 FAD N7A C5A sing Y N 97 FAD C5A C6A sing Y N 98 FAD C5A C4A doub Y N 99 FAD C6A N6A sing N N 100 FAD C6A N1A doub Y N 101 FAD N6A H61A sing N N 102 FAD N6A H62A sing N N 103 FAD N1A C2A sing Y N 104 FAD C2A N3A doub Y N 105 FAD C2A H2A sing N N 106 FAD N3A C4A sing Y N 107 FAD N1 C2 sing N N 108 FAD N1 C10 doub N N 109 FAD C2 O2 doub N N 110 FAD C2 N3 sing N N 111 FAD N3 C4 sing N N 112 FAD N3 HN3 sing N N 113 FAD C4 O4 doub N N 114 FAD C4 C4X sing N N 115 FAD C4X N5 doub N N 116 FAD C4X C10 sing N N 117 FAD N5 C5X sing N N 118 FAD C5X C6 doub Y N 119 FAD C5X C9A sing Y N 120 FAD C6 C7 sing Y N 121 FAD C6 H6 sing N N 122 FAD C7 C7M sing N N 123 FAD C7 C8 doub Y N 124 FAD C7M HM71 sing N N 125 FAD C7M HM72 sing N N 126 FAD C7M HM73 sing N N 127 FAD C8 C8M sing N N 128 FAD C8 C9 sing Y N 129 FAD C8M HM81 sing N N 130 FAD C8M HM82 sing N N 131 FAD C8M HM83 sing N N 132 FAD C9 C9A doub Y N 133 FAD C9 H9 sing N N 134 FAD C9A N10 sing N N 135 FAD N10 C10 sing N N 136 FAD N10 "C1'" sing N N 137 FAD "C1'" "C2'" sing N N 138 FAD "C1'" "H1'1" sing N N 139 FAD "C1'" "H1'2" sing N N 140 FAD "C2'" "O2'" sing N N 141 FAD "C2'" "C3'" sing N N 142 FAD "C2'" "H2'" sing N N 143 FAD "O2'" "HO2'" sing N N 144 FAD "C3'" "O3'" sing N N 145 FAD "C3'" "C4'" sing N N 146 FAD "C3'" "H3'" sing N N 147 FAD "O3'" "HO3'" sing N N 148 FAD "C4'" "O4'" sing N N 149 FAD "C4'" "C5'" sing N N 150 FAD "C4'" "H4'" sing N N 151 FAD "O4'" "HO4'" sing N N 152 FAD "C5'" "O5'" sing N N 153 FAD "C5'" "H5'1" sing N N 154 FAD "C5'" "H5'2" sing N N 155 FAD "O5'" P sing N N 156 FAD P O1P doub N N 157 FAD P O2P sing N N 158 FAD P O3P sing N N 159 FAD O2P HOP2 sing N N 160 FMN N1 C2 sing N N 161 FMN N1 C10 doub N N 162 FMN C2 O2 doub N N 163 FMN C2 N3 sing N N 164 FMN N3 C4 sing N N 165 FMN N3 HN3 sing N N 166 FMN C4 O4 doub N N 167 FMN C4 C4A sing N N 168 FMN C4A N5 doub N N 169 FMN C4A C10 sing N N 170 FMN N5 C5A sing N N 171 FMN C5A C6 doub Y N 172 FMN C5A C9A sing Y N 173 FMN C6 C7 sing Y N 174 FMN C6 H6 sing N N 175 FMN C7 C7M sing N N 176 FMN C7 C8 doub Y N 177 FMN C7M HM71 sing N N 178 FMN C7M HM72 sing N N 179 FMN C7M HM73 sing N N 180 FMN C8 C8M sing N N 181 FMN C8 C9 sing Y N 182 FMN C8M HM81 sing N N 183 FMN C8M HM82 sing N N 184 FMN C8M HM83 sing N N 185 FMN C9 C9A doub Y N 186 FMN C9 H9 sing N N 187 FMN C9A N10 sing N N 188 FMN N10 C10 sing N N 189 FMN N10 "C1'" sing N N 190 FMN "C1'" "C2'" sing N N 191 FMN "C1'" "H1'1" sing N N 192 FMN "C1'" "H1'2" sing N N 193 FMN "C2'" "O2'" sing N N 194 FMN "C2'" "C3'" sing N N 195 FMN "C2'" "H2'" sing N N 196 FMN "O2'" "HO2'" sing N N 197 FMN "C3'" "O3'" sing N N 198 FMN "C3'" "C4'" sing N N 199 FMN "C3'" "H3'" sing N N 200 FMN "O3'" "HO3'" sing N N 201 FMN "C4'" "O4'" sing N N 202 FMN "C4'" "C5'" sing N N 203 FMN "C4'" "H4'" sing N N 204 FMN "O4'" "HO4'" sing N N 205 FMN "C5'" "O5'" sing N N 206 FMN "C5'" "H5'1" sing N N 207 FMN "C5'" "H5'2" sing N N 208 FMN "O5'" P sing N N 209 FMN P O1P doub N N 210 FMN P O2P sing N N 211 FMN P O3P sing N N 212 FMN O2P HOP2 sing N N 213 FMN O3P HOP3 sing N N 214 GLN N CA sing N N 215 GLN N H sing N N 216 GLN N H2 sing N N 217 GLN CA C sing N N 218 GLN CA CB sing N N 219 GLN CA HA sing N N 220 GLN C O doub N N 221 GLN C OXT sing N N 222 GLN CB CG sing N N 223 GLN CB HB2 sing N N 224 GLN CB HB3 sing N N 225 GLN CG CD sing N N 226 GLN CG HG2 sing N N 227 GLN CG HG3 sing N N 228 GLN CD OE1 doub N N 229 GLN CD NE2 sing N N 230 GLN NE2 HE21 sing N N 231 GLN NE2 HE22 sing N N 232 GLN OXT HXT sing N N 233 GLU N CA sing N N 234 GLU N H sing N N 235 GLU N H2 sing N N 236 GLU CA C sing N N 237 GLU CA CB sing N N 238 GLU CA HA sing N N 239 GLU C O doub N N 240 GLU C OXT sing N N 241 GLU CB CG sing N N 242 GLU CB HB2 sing N N 243 GLU CB HB3 sing N N 244 GLU CG CD sing N N 245 GLU CG HG2 sing N N 246 GLU CG HG3 sing N N 247 GLU CD OE1 doub N N 248 GLU CD OE2 sing N N 249 GLU OE2 HE2 sing N N 250 GLU OXT HXT sing N N 251 GLY N CA sing N N 252 GLY N H sing N N 253 GLY N H2 sing N N 254 GLY CA C sing N N 255 GLY CA HA2 sing N N 256 GLY CA HA3 sing N N 257 GLY C O doub N N 258 GLY C OXT sing N N 259 GLY OXT HXT sing N N 260 HIS N CA sing N N 261 HIS N H sing N N 262 HIS N H2 sing N N 263 HIS CA C sing N N 264 HIS CA CB sing N N 265 HIS CA HA sing N N 266 HIS C O doub N N 267 HIS C OXT sing N N 268 HIS CB CG sing N N 269 HIS CB HB2 sing N N 270 HIS CB HB3 sing N N 271 HIS CG ND1 sing Y N 272 HIS CG CD2 doub Y N 273 HIS ND1 CE1 doub Y N 274 HIS ND1 HD1 sing N N 275 HIS CD2 NE2 sing Y N 276 HIS CD2 HD2 sing N N 277 HIS CE1 NE2 sing Y N 278 HIS CE1 HE1 sing N N 279 HIS NE2 HE2 sing N N 280 HIS OXT HXT sing N N 281 HOH O H1 sing N N 282 HOH O H2 sing N N 283 ILE N CA sing N N 284 ILE N H sing N N 285 ILE N H2 sing N N 286 ILE CA C sing N N 287 ILE CA CB sing N N 288 ILE CA HA sing N N 289 ILE C O doub N N 290 ILE C OXT sing N N 291 ILE CB CG1 sing N N 292 ILE CB CG2 sing N N 293 ILE CB HB sing N N 294 ILE CG1 CD1 sing N N 295 ILE CG1 HG12 sing N N 296 ILE CG1 HG13 sing N N 297 ILE CG2 HG21 sing N N 298 ILE CG2 HG22 sing N N 299 ILE CG2 HG23 sing N N 300 ILE CD1 HD11 sing N N 301 ILE CD1 HD12 sing N N 302 ILE CD1 HD13 sing N N 303 ILE OXT HXT sing N N 304 LEU N CA sing N N 305 LEU N H sing N N 306 LEU N H2 sing N N 307 LEU CA C sing N N 308 LEU CA CB sing N N 309 LEU CA HA sing N N 310 LEU C O doub N N 311 LEU C OXT sing N N 312 LEU CB CG sing N N 313 LEU CB HB2 sing N N 314 LEU CB HB3 sing N N 315 LEU CG CD1 sing N N 316 LEU CG CD2 sing N N 317 LEU CG HG sing N N 318 LEU CD1 HD11 sing N N 319 LEU CD1 HD12 sing N N 320 LEU CD1 HD13 sing N N 321 LEU CD2 HD21 sing N N 322 LEU CD2 HD22 sing N N 323 LEU CD2 HD23 sing N N 324 LEU OXT HXT sing N N 325 LYS N CA sing N N 326 LYS N H sing N N 327 LYS N H2 sing N N 328 LYS CA C sing N N 329 LYS CA CB sing N N 330 LYS CA HA sing N N 331 LYS C O doub N N 332 LYS C OXT sing N N 333 LYS CB CG sing N N 334 LYS CB HB2 sing N N 335 LYS CB HB3 sing N N 336 LYS CG CD sing N N 337 LYS CG HG2 sing N N 338 LYS CG HG3 sing N N 339 LYS CD CE sing N N 340 LYS CD HD2 sing N N 341 LYS CD HD3 sing N N 342 LYS CE NZ sing N N 343 LYS CE HE2 sing N N 344 LYS CE HE3 sing N N 345 LYS NZ HZ1 sing N N 346 LYS NZ HZ2 sing N N 347 LYS NZ HZ3 sing N N 348 LYS OXT HXT sing N N 349 MET N CA sing N N 350 MET N H sing N N 351 MET N H2 sing N N 352 MET CA C sing N N 353 MET CA CB sing N N 354 MET CA HA sing N N 355 MET C O doub N N 356 MET C OXT sing N N 357 MET CB CG sing N N 358 MET CB HB2 sing N N 359 MET CB HB3 sing N N 360 MET CG SD sing N N 361 MET CG HG2 sing N N 362 MET CG HG3 sing N N 363 MET SD CE sing N N 364 MET CE HE1 sing N N 365 MET CE HE2 sing N N 366 MET CE HE3 sing N N 367 MET OXT HXT sing N N 368 PHE N CA sing N N 369 PHE N H sing N N 370 PHE N H2 sing N N 371 PHE CA C sing N N 372 PHE CA CB sing N N 373 PHE CA HA sing N N 374 PHE C O doub N N 375 PHE C OXT sing N N 376 PHE CB CG sing N N 377 PHE CB HB2 sing N N 378 PHE CB HB3 sing N N 379 PHE CG CD1 doub Y N 380 PHE CG CD2 sing Y N 381 PHE CD1 CE1 sing Y N 382 PHE CD1 HD1 sing N N 383 PHE CD2 CE2 doub Y N 384 PHE CD2 HD2 sing N N 385 PHE CE1 CZ doub Y N 386 PHE CE1 HE1 sing N N 387 PHE CE2 CZ sing Y N 388 PHE CE2 HE2 sing N N 389 PHE CZ HZ sing N N 390 PHE OXT HXT sing N N 391 PRO N CA sing N N 392 PRO N CD sing N N 393 PRO N H sing N N 394 PRO CA C sing N N 395 PRO CA CB sing N N 396 PRO CA HA sing N N 397 PRO C O doub N N 398 PRO C OXT sing N N 399 PRO CB CG sing N N 400 PRO CB HB2 sing N N 401 PRO CB HB3 sing N N 402 PRO CG CD sing N N 403 PRO CG HG2 sing N N 404 PRO CG HG3 sing N N 405 PRO CD HD2 sing N N 406 PRO CD HD3 sing N N 407 PRO OXT HXT sing N N 408 SER N CA sing N N 409 SER N H sing N N 410 SER N H2 sing N N 411 SER CA C sing N N 412 SER CA CB sing N N 413 SER CA HA sing N N 414 SER C O doub N N 415 SER C OXT sing N N 416 SER CB OG sing N N 417 SER CB HB2 sing N N 418 SER CB HB3 sing N N 419 SER OG HG sing N N 420 SER OXT HXT sing N N 421 THR N CA sing N N 422 THR N H sing N N 423 THR N H2 sing N N 424 THR CA C sing N N 425 THR CA CB sing N N 426 THR CA HA sing N N 427 THR C O doub N N 428 THR C OXT sing N N 429 THR CB OG1 sing N N 430 THR CB CG2 sing N N 431 THR CB HB sing N N 432 THR OG1 HG1 sing N N 433 THR CG2 HG21 sing N N 434 THR CG2 HG22 sing N N 435 THR CG2 HG23 sing N N 436 THR OXT HXT sing N N 437 TRP N CA sing N N 438 TRP N H sing N N 439 TRP N H2 sing N N 440 TRP CA C sing N N 441 TRP CA CB sing N N 442 TRP CA HA sing N N 443 TRP C O doub N N 444 TRP C OXT sing N N 445 TRP CB CG sing N N 446 TRP CB HB2 sing N N 447 TRP CB HB3 sing N N 448 TRP CG CD1 doub Y N 449 TRP CG CD2 sing Y N 450 TRP CD1 NE1 sing Y N 451 TRP CD1 HD1 sing N N 452 TRP CD2 CE2 doub Y N 453 TRP CD2 CE3 sing Y N 454 TRP NE1 CE2 sing Y N 455 TRP NE1 HE1 sing N N 456 TRP CE2 CZ2 sing Y N 457 TRP CE3 CZ3 doub Y N 458 TRP CE3 HE3 sing N N 459 TRP CZ2 CH2 doub Y N 460 TRP CZ2 HZ2 sing N N 461 TRP CZ3 CH2 sing Y N 462 TRP CZ3 HZ3 sing N N 463 TRP CH2 HH2 sing N N 464 TRP OXT HXT sing N N 465 TYR N CA sing N N 466 TYR N H sing N N 467 TYR N H2 sing N N 468 TYR CA C sing N N 469 TYR CA CB sing N N 470 TYR CA HA sing N N 471 TYR C O doub N N 472 TYR C OXT sing N N 473 TYR CB CG sing N N 474 TYR CB HB2 sing N N 475 TYR CB HB3 sing N N 476 TYR CG CD1 doub Y N 477 TYR CG CD2 sing Y N 478 TYR CD1 CE1 sing Y N 479 TYR CD1 HD1 sing N N 480 TYR CD2 CE2 doub Y N 481 TYR CD2 HD2 sing N N 482 TYR CE1 CZ doub Y N 483 TYR CE1 HE1 sing N N 484 TYR CE2 CZ sing Y N 485 TYR CE2 HE2 sing N N 486 TYR CZ OH sing N N 487 TYR OH HH sing N N 488 TYR OXT HXT sing N N 489 VAL N CA sing N N 490 VAL N H sing N N 491 VAL N H2 sing N N 492 VAL CA C sing N N 493 VAL CA CB sing N N 494 VAL CA HA sing N N 495 VAL C O doub N N 496 VAL C OXT sing N N 497 VAL CB CG1 sing N N 498 VAL CB CG2 sing N N 499 VAL CB HB sing N N 500 VAL CG1 HG11 sing N N 501 VAL CG1 HG12 sing N N 502 VAL CG1 HG13 sing N N 503 VAL CG2 HG21 sing N N 504 VAL CG2 HG22 sing N N 505 VAL CG2 HG23 sing N N 506 VAL OXT HXT sing N N 507 # _atom_sites.entry_id 1YOA _atom_sites.fract_transf_matrix[1][1] 0.007521 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007521 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007521 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_