HEADER METAL BINDING PROTEIN 28-JAN-05 1YOP TITLE THE SOLUTION STRUCTURE OF KTI11P COMPND MOL_ID: 1; COMPND 2 MOLECULE: KTI11P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS ZINC FINGER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SUN,J.ZHANG,F.WU,C.XU,S.LI,W.ZHAO,Z.WU,J.WU,C.-Z.ZHOU,Y.SHI REVDAT 4 02-MAR-22 1YOP 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1YOP 1 VERSN REVDAT 2 05-JUL-05 1YOP 1 JRNL REVDAT 1 05-APR-05 1YOP 0 JRNL AUTH J.SUN,J.ZHANG,F.WU,C.XU,S.LI,W.ZHAO,Z.WU,J.WU,C.Z.ZHOU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF KTI11P FROM SACCHAROMYCES CEREVISIAE JRNL TITL 2 REVEALS A NOVEL ZINC-BINDING MODULE. JRNL REF BIOCHEMISTRY V. 44 8801 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15952786 JRNL DOI 10.1021/BI0504714 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YOP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031757. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM TRIS BUFFER, 50MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 12 37.62 -96.70 REMARK 500 1 GLU A 18 -46.45 -141.95 REMARK 500 1 PRO A 25 99.35 -50.95 REMARK 500 1 ASP A 30 -168.24 -114.09 REMARK 500 1 GLU A 41 41.04 -90.96 REMARK 500 1 SER A 50 -59.53 -129.81 REMARK 500 1 GLU A 62 -62.52 -99.69 REMARK 500 1 GLU A 77 149.70 68.62 REMARK 500 2 THR A 4 172.67 60.40 REMARK 500 2 ASP A 12 37.29 -96.46 REMARK 500 2 GLN A 20 73.75 52.27 REMARK 500 2 SER A 50 -56.25 -128.45 REMARK 500 2 GLU A 62 -70.27 -99.15 REMARK 500 2 GLU A 77 -60.12 -167.11 REMARK 500 2 ALA A 80 75.27 57.76 REMARK 500 2 ALA A 81 -174.37 62.95 REMARK 500 2 ALA A 82 136.13 -170.26 REMARK 500 3 ASP A 12 36.89 -97.01 REMARK 500 3 ASN A 19 25.32 -143.17 REMARK 500 3 GLN A 20 72.25 53.35 REMARK 500 3 SER A 50 -57.67 -128.01 REMARK 500 3 GLU A 77 82.54 57.64 REMARK 500 3 ALA A 80 90.79 60.32 REMARK 500 3 ALA A 82 80.86 56.89 REMARK 500 4 ASP A 12 36.14 -95.09 REMARK 500 4 GLU A 18 82.99 -66.17 REMARK 500 4 GLN A 20 78.07 53.49 REMARK 500 4 ASP A 30 -165.20 -122.42 REMARK 500 4 SER A 52 36.40 72.96 REMARK 500 4 PRO A 78 85.37 -57.62 REMARK 500 5 SER A 3 80.25 -167.79 REMARK 500 5 THR A 4 -171.51 56.61 REMARK 500 5 ASP A 12 39.00 -98.52 REMARK 500 5 SER A 50 -57.19 -129.15 REMARK 500 5 HIS A 74 85.90 59.98 REMARK 500 5 ILE A 79 30.47 -151.04 REMARK 500 5 ALA A 81 159.00 67.22 REMARK 500 6 VAL A 2 43.58 -106.86 REMARK 500 6 SER A 3 82.71 56.05 REMARK 500 6 THR A 4 173.11 63.13 REMARK 500 6 GLU A 18 82.53 -69.03 REMARK 500 6 GLN A 20 77.54 54.14 REMARK 500 6 LYS A 44 -47.99 -149.37 REMARK 500 6 SER A 50 -55.72 -128.71 REMARK 500 6 PRO A 78 95.69 -68.31 REMARK 500 6 ALA A 80 90.80 60.12 REMARK 500 7 THR A 4 177.48 63.23 REMARK 500 7 TYR A 5 -76.40 -105.58 REMARK 500 7 ASP A 12 37.37 -96.91 REMARK 500 7 ASN A 19 33.64 -146.55 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 84 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 28 SG 108.2 REMARK 620 3 CYS A 48 SG 110.3 110.0 REMARK 620 4 CYS A 51 SG 110.0 109.4 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 84 DBREF 1YOP A 1 83 UNP Q3E840 DPH3_YEAST 1 82 SEQADV 1YOP VAL A 2 UNP Q3E840 INSERTION SEQRES 1 A 83 MET VAL SER THR TYR ASP GLU ILE GLU ILE GLU ASP MET SEQRES 2 A 83 THR PHE GLU PRO GLU ASN GLN MET PHE THR TYR PRO CYS SEQRES 3 A 83 PRO CYS GLY ASP ARG PHE GLN ILE TYR LEU ASP ASP MET SEQRES 4 A 83 PHE GLU GLY GLU LYS VAL ALA VAL CYS PRO SER CYS SER SEQRES 5 A 83 LEU MET ILE ASP VAL VAL PHE ASP LYS GLU ASP LEU ALA SEQRES 6 A 83 GLU TYR TYR GLU GLU ALA GLY ILE HIS PRO PRO GLU PRO SEQRES 7 A 83 ILE ALA ALA ALA ALA HET ZN A 84 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLU A 9 MET A 13 5 5 HELIX 2 2 LEU A 36 GLU A 41 1 6 HELIX 3 3 GLU A 62 ALA A 71 1 10 SHEET 1 A 3 THR A 14 GLU A 16 0 SHEET 2 A 3 MET A 21 CYS A 26 -1 O MET A 21 N GLU A 16 SHEET 3 A 3 ASP A 30 TYR A 35 -1 O ILE A 34 N PHE A 22 SHEET 1 B 2 VAL A 45 VAL A 47 0 SHEET 2 B 2 MET A 54 ASP A 56 -1 O ILE A 55 N ALA A 46 LINK SG CYS A 26 ZN ZN A 84 1555 1555 2.41 LINK SG CYS A 28 ZN ZN A 84 1555 1555 2.41 LINK SG CYS A 48 ZN ZN A 84 1555 1555 2.40 LINK SG CYS A 51 ZN ZN A 84 1555 1555 2.41 SITE 1 AC1 4 CYS A 26 CYS A 28 CYS A 48 CYS A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1