HEADER LYASE 09-MAR-98 1YPD OBSLTE 04-FEB-00 1YPD 1QPB TITLE THDP DEPENDENT PYRUVATE DECARBOYXLASE FROM YEAST (FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE DECARBOXYLASE (FORM B); COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.1; COMPND 5 OTHER_DETAILS: FORM B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 STRAIN: WS 34/70 KEYWDS THIAMINE PYRUVATE, PYRUVAMIDE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,G.SCHNEIDER REVDAT 2 04-FEB-00 1YPD 1 OBSLTE REVDAT 1 27-MAY-98 1YPD 0 JRNL AUTH G.LU,D.DOBRITZSCH,S.KONIG,G.SCHNEIDER JRNL TITL NOVEL TETRAMER ASSEMBLY OF PYRUVATE DECARBOXYLASE JRNL TITL 2 FROM BREWER'S YEAST OBSERVED IN A NEW CRYSTAL FORM JRNL REF FEBS LETT. V. 403 249 1997 JRNL REFN ASTM FEBLAL NE ISSN 0014-5793 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 540 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 25 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.13 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION WAS APPLIED REMARK 4 REMARK 4 1YPD COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 ELECTRON DENSITY OF SOME RESIDUES ARE NOT VISIBLE. THESE REMARK 6 INCLUDE A 104 - A 113, B 290 - B 304, A1, B1, C-TERMINAL REMARK 6 RESIDUES AFTER 557 AND SIDE CHAIN ATOMS OF A 114, B 107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-1997 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PVD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.52450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.52450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 104 REMARK 465 SER A 105 REMARK 465 ALA A 106 REMARK 465 GLN A 107 REMARK 465 ALA A 108 REMARK 465 LYS A 109 REMARK 465 GLN A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 LEU A 113 REMARK 465 ALA A 557 REMARK 465 ALA A 558 REMARK 465 THR A 559 REMARK 465 ASN A 560 REMARK 465 ALA A 561 REMARK 465 LYS A 562 REMARK 465 GLN A 563 REMARK 465 MET B 1 REMARK 465 SER B 290 REMARK 465 ASP B 291 REMARK 465 PHE B 292 REMARK 465 ASN B 293 REMARK 465 THR B 294 REMARK 465 GLY B 295 REMARK 465 SER B 296 REMARK 465 PHE B 297 REMARK 465 SER B 298 REMARK 465 TYR B 299 REMARK 465 SER B 300 REMARK 465 TYR B 301 REMARK 465 LYS B 302 REMARK 465 THR B 303 REMARK 465 LYS B 304 REMARK 465 ALA B 557 REMARK 465 ALA B 558 REMARK 465 THR B 559 REMARK 465 ASN B 560 REMARK 465 ALA B 561 REMARK 465 LYS B 562 REMARK 465 GLN B 563 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 114 CB REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 128 SD MET A 128 CE -0.045 REMARK 500 PRO A 214 CB PRO A 214 CG 0.059 REMARK 500 MET A 247 SD MET A 247 CE 0.068 REMARK 500 MET A 326 SD MET A 326 CE 0.050 REMARK 500 MET A 539 SD MET A 539 CE 0.047 REMARK 500 PRO B 214 CB PRO B 214 CG 0.055 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 18 N - CA - C ANGL. DEV. = 8.8 DEGREES REMARK 500 VAL A 19 N - CA - C ANGL. DEV. = -9.0 DEGREES REMARK 500 SER A 103 N - CA - C ANGL. DEV. = 8.9 DEGREES REMARK 500 MET A 138 N - CA - C ANGL. DEV. = -7.8 DEGREES REMARK 500 CYS A 221 N - CA - C ANGL. DEV. = 10.0 DEGREES REMARK 500 LYS A 269 N - CA - C ANGL. DEV. =-10.2 DEGREES REMARK 500 LEU A 333 CA - CB - CG ANGL. DEV. = 8.7 DEGREES REMARK 500 VAL A 383 N - CA - C ANGL. DEV. = -9.0 DEGREES REMARK 500 LEU A 411 CA - CB - CG ANGL. DEV. = 7.9 DEGREES REMARK 500 GLY A 413 N - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 LEU A 423 CA - CB - CG ANGL. DEV. = 8.3 DEGREES REMARK 500 LEU A 440 CA - CB - CG ANGL. DEV. = 8.3 DEGREES REMARK 500 ASN B 18 N - CA - C ANGL. DEV. = 8.8 DEGREES REMARK 500 VAL B 19 N - CA - C ANGL. DEV. = -7.8 DEGREES REMARK 500 LEU B 111 N - CA - C ANGL. DEV. = 9.7 DEGREES REMARK 500 MET B 138 N - CA - C ANGL. DEV. = -7.7 DEGREES REMARK 500 CYS B 221 N - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 LYS B 269 N - CA - C ANGL. DEV. =-10.1 DEGREES REMARK 500 LEU B 333 CA - CB - CG ANGL. DEV. = 9.2 DEGREES REMARK 500 VAL B 383 N - CA - C ANGL. DEV. = -8.8 DEGREES REMARK 500 LEU B 423 CA - CB - CG ANGL. DEV. = 9.3 DEGREES REMARK 500 LEU B 440 CA - CB - CG ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP B 494 N - CA - C ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 317 -99.84 61.91 REMARK 500 ARG B 317 -102.98 63.40 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 92 DISTANCE = 5.07 ANGSTROMS DBREF 1YPD A 2 103 PDB 1YPD 1YPD 2 103 DBREF 1YPD A 114 556 PDB 1YPD 1YPD 114 556 DBREF 1YPD B 2 289 PDB 1YPD 1YPD 2 289 DBREF 1YPD B 305 556 PDB 1YPD 1YPD 305 556 SEQRES 1 A 563 MET SER GLU ILE THR LEU GLY LYS TYR LEU PHE GLU ARG SEQRES 2 A 563 LEU LYS GLN VAL ASN VAL ASN THR VAL PHE GLY LEU PRO SEQRES 3 A 563 GLY ASP PHE ASN LEU SER LEU LEU ASP LYS ILE TYR GLU SEQRES 4 A 563 VAL GLU GLY MET ARG TRP ALA GLY ASN ALA ASN GLU LEU SEQRES 5 A 563 ASN ALA ALA TYR ALA ALA ASP GLY TYR ALA ARG ILE LYS SEQRES 6 A 563 GLY MET SER CYS ILE ILE THR THR PHE GLY VAL GLY GLU SEQRES 7 A 563 LEU SER ALA LEU ASN GLY ILE ALA GLY SER TYR ALA GLU SEQRES 8 A 563 HIS VAL GLY VAL LEU HIS VAL VAL GLY VAL PRO SER ILE SEQRES 9 A 563 SER ALA GLN ALA LYS GLN LEU LEU LEU HIS HIS THR LEU SEQRES 10 A 563 GLY ASN GLY ASP PHE THR VAL PHE HIS ARG MET SER ALA SEQRES 11 A 563 ASN ILE SER GLU THR THR ALA MET ILE THR ASP ILE ALA SEQRES 12 A 563 THR ALA PRO ALA GLU ILE ASP ARG CYS ILE ARG THR THR SEQRES 13 A 563 TYR VAL THR GLN ARG PRO VAL TYR LEU GLY LEU PRO ALA SEQRES 14 A 563 ASN LEU VAL ASP LEU ASN VAL PRO ALA LYS LEU LEU GLN SEQRES 15 A 563 THR PRO ILE ASP MET SER LEU LYS PRO ASN ASP ALA GLU SEQRES 16 A 563 SER GLU LYS GLU VAL ILE ASP THR ILE LEU ALA LEU VAL SEQRES 17 A 563 LYS ASP ALA LYS ASN PRO VAL ILE LEU ALA ASP ALA CYS SEQRES 18 A 563 CYS SER ARG HIS ASP VAL LYS ALA GLU THR LYS LYS LEU SEQRES 19 A 563 ILE ASP LEU THR GLN PHE PRO ALA VAL VAL THR PRO MET SEQRES 20 A 563 GLY LYS GLY SER ILE ASP GLU GLN HIS PRO ARG TYR GLY SEQRES 21 A 563 GLY VAL TYR VAL GLY THR LEU SER LYS PRO GLU VAL LYS SEQRES 22 A 563 GLU ALA VAL GLU SER ALA ASP LEU ILE LEU SER VAL GLY SEQRES 23 A 563 ALA LEU LEU SER ASP PHE ASN THR GLY SER PHE SER TYR SEQRES 24 A 563 SER TYR LYS THR LYS ASN ILE VAL GLU PHE HIS SER ASP SEQRES 25 A 563 HIS MET LYS ILE ARG ASN ALA THR PHE PRO GLY VAL GLN SEQRES 26 A 563 MET LYS PHE VAL LEU GLN LYS LEU LEU THR THR ILE ALA SEQRES 27 A 563 ASP ALA ALA LYS GLY TYR LYS PRO VAL ALA VAL PRO ALA SEQRES 28 A 563 ARG THR PRO ALA ASN ALA ALA VAL PRO ALA SER THR PRO SEQRES 29 A 563 LEU LYS GLN GLU TRP MET TRP ASN GLN LEU GLY ASN PHE SEQRES 30 A 563 LEU GLN GLU GLY ASP VAL VAL ILE ALA GLU THR GLY THR SEQRES 31 A 563 SER ALA PHE GLY ILE ASN GLN THR THR PHE PRO ASN ASN SEQRES 32 A 563 THR TYR GLY ILE SER GLN VAL LEU TRP GLY SER ILE GLY SEQRES 33 A 563 PHE THR THR GLY ALA THR LEU GLY ALA ALA PHE ALA ALA SEQRES 34 A 563 GLU GLU ILE ASP PRO LYS LYS ARG VAL ILE LEU PHE ILE SEQRES 35 A 563 GLY ASP GLY SER LEU GLN LEU THR VAL GLN GLU ILE SER SEQRES 36 A 563 THR MET ILE ARG TRP GLY LEU LYS PRO TYR LEU PHE VAL SEQRES 37 A 563 LEU ASN ASN ASP GLY TYR THR ILE GLU LYS LEU ILE HIS SEQRES 38 A 563 GLY PRO LYS ALA GLN TYR ASN GLU ILE GLN GLY TRP ASP SEQRES 39 A 563 HIS LEU SER LEU LEU PRO THR PHE GLY ALA LYS ASP TYR SEQRES 40 A 563 GLU THR HIS ARG VAL ALA THR THR GLY GLU TRP ASP LYS SEQRES 41 A 563 LEU THR GLN ASP LYS SER PHE ASN ASP ASN SER LYS ILE SEQRES 42 A 563 ARG MET ILE GLU ILE MET LEU PRO VAL PHE ASP ALA PRO SEQRES 43 A 563 GLN ASN LEU VAL GLU GLN ALA LYS LEU THR ALA ALA THR SEQRES 44 A 563 ASN ALA LYS GLN SEQRES 1 B 563 MET SER GLU ILE THR LEU GLY LYS TYR LEU PHE GLU ARG SEQRES 2 B 563 LEU LYS GLN VAL ASN VAL ASN THR VAL PHE GLY LEU PRO SEQRES 3 B 563 GLY ASP PHE ASN LEU SER LEU LEU ASP LYS ILE TYR GLU SEQRES 4 B 563 VAL GLU GLY MET ARG TRP ALA GLY ASN ALA ASN GLU LEU SEQRES 5 B 563 ASN ALA ALA TYR ALA ALA ASP GLY TYR ALA ARG ILE LYS SEQRES 6 B 563 GLY MET SER CYS ILE ILE THR THR PHE GLY VAL GLY GLU SEQRES 7 B 563 LEU SER ALA LEU ASN GLY ILE ALA GLY SER TYR ALA GLU SEQRES 8 B 563 HIS VAL GLY VAL LEU HIS VAL VAL GLY VAL PRO SER ILE SEQRES 9 B 563 SER ALA GLN ALA LYS GLN LEU LEU LEU HIS HIS THR LEU SEQRES 10 B 563 GLY ASN GLY ASP PHE THR VAL PHE HIS ARG MET SER ALA SEQRES 11 B 563 ASN ILE SER GLU THR THR ALA MET ILE THR ASP ILE ALA SEQRES 12 B 563 THR ALA PRO ALA GLU ILE ASP ARG CYS ILE ARG THR THR SEQRES 13 B 563 TYR VAL THR GLN ARG PRO VAL TYR LEU GLY LEU PRO ALA SEQRES 14 B 563 ASN LEU VAL ASP LEU ASN VAL PRO ALA LYS LEU LEU GLN SEQRES 15 B 563 THR PRO ILE ASP MET SER LEU LYS PRO ASN ASP ALA GLU SEQRES 16 B 563 SER GLU LYS GLU VAL ILE ASP THR ILE LEU ALA LEU VAL SEQRES 17 B 563 LYS ASP ALA LYS ASN PRO VAL ILE LEU ALA ASP ALA CYS SEQRES 18 B 563 CYS SER ARG HIS ASP VAL LYS ALA GLU THR LYS LYS LEU SEQRES 19 B 563 ILE ASP LEU THR GLN PHE PRO ALA VAL VAL THR PRO MET SEQRES 20 B 563 GLY LYS GLY SER ILE ASP GLU GLN HIS PRO ARG TYR GLY SEQRES 21 B 563 GLY VAL TYR VAL GLY THR LEU SER LYS PRO GLU VAL LYS SEQRES 22 B 563 GLU ALA VAL GLU SER ALA ASP LEU ILE LEU SER VAL GLY SEQRES 23 B 563 ALA LEU LEU SER ASP PHE ASN THR GLY SER PHE SER TYR SEQRES 24 B 563 SER TYR LYS THR LYS ASN ILE VAL GLU PHE HIS SER ASP SEQRES 25 B 563 HIS MET LYS ILE ARG ASN ALA THR PHE PRO GLY VAL GLN SEQRES 26 B 563 MET LYS PHE VAL LEU GLN LYS LEU LEU THR THR ILE ALA SEQRES 27 B 563 ASP ALA ALA LYS GLY TYR LYS PRO VAL ALA VAL PRO ALA SEQRES 28 B 563 ARG THR PRO ALA ASN ALA ALA VAL PRO ALA SER THR PRO SEQRES 29 B 563 LEU LYS GLN GLU TRP MET TRP ASN GLN LEU GLY ASN PHE SEQRES 30 B 563 LEU GLN GLU GLY ASP VAL VAL ILE ALA GLU THR GLY THR SEQRES 31 B 563 SER ALA PHE GLY ILE ASN GLN THR THR PHE PRO ASN ASN SEQRES 32 B 563 THR TYR GLY ILE SER GLN VAL LEU TRP GLY SER ILE GLY SEQRES 33 B 563 PHE THR THR GLY ALA THR LEU GLY ALA ALA PHE ALA ALA SEQRES 34 B 563 GLU GLU ILE ASP PRO LYS LYS ARG VAL ILE LEU PHE ILE SEQRES 35 B 563 GLY ASP GLY SER LEU GLN LEU THR VAL GLN GLU ILE SER SEQRES 36 B 563 THR MET ILE ARG TRP GLY LEU LYS PRO TYR LEU PHE VAL SEQRES 37 B 563 LEU ASN ASN ASP GLY TYR THR ILE GLU LYS LEU ILE HIS SEQRES 38 B 563 GLY PRO LYS ALA GLN TYR ASN GLU ILE GLN GLY TRP ASP SEQRES 39 B 563 HIS LEU SER LEU LEU PRO THR PHE GLY ALA LYS ASP TYR SEQRES 40 B 563 GLU THR HIS ARG VAL ALA THR THR GLY GLU TRP ASP LYS SEQRES 41 B 563 LEU THR GLN ASP LYS SER PHE ASN ASP ASN SER LYS ILE SEQRES 42 B 563 ARG MET ILE GLU ILE MET LEU PRO VAL PHE ASP ALA PRO SEQRES 43 B 563 GLN ASN LEU VAL GLU GLN ALA LYS LEU THR ALA ALA THR SEQRES 44 B 563 ASN ALA LYS GLN HET MG A 601 1 HET MG B 601 1 HET TPP A 600 26 HET TPP B 600 26 HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 5 TPP 2(C12 H18 N4 O7 P2 S) FORMUL 7 HOH *148(H2 O1) HELIX 1 1 LEU A 6 GLN A 16 1 11 HELIX 2 2 LEU A 31 GLU A 39 1 9 HELIX 3 3 GLU A 51 LYS A 65 1 15 HELIX 4 4 VAL A 76 SER A 80 1 5 HELIX 5 5 LEU A 82 ALA A 90 1 9 HELIX 6 6 VAL A 124 ILE A 132 1 9 HELIX 7 7 ILE A 142 THR A 159 1 18 HELIX 8 8 ALA A 169 VAL A 172 1 4 HELIX 9 9 ALA A 178 GLN A 182 5 5 HELIX 10 10 ALA A 194 ASP A 210 1 17 HELIX 11 11 ALA A 220 SER A 223 1 4 HELIX 12 12 LYS A 228 THR A 238 1 11 HELIX 13 13 GLY A 265 LEU A 267 5 3 HELIX 14 14 PRO A 270 GLU A 277 1 8 HELIX 15 15 MET A 326 ALA A 340 1 15 HELIX 16 16 GLN A 367 PHE A 377 1 11 HELIX 17 17 THR A 390 GLN A 397 1 8 HELIX 18 18 PHE A 417 ILE A 432 1 16 HELIX 19 19 ASP A 444 ARG A 459 1 16 HELIX 20 20 THR A 475 ILE A 480 1 6 HELIX 21 21 GLN A 486 ASN A 488 5 3 HELIX 22 22 LEU A 496 PHE A 502 5 7 HELIX 23 23 THR A 515 THR A 522 1 8 HELIX 24 24 GLN A 547 GLN A 552 1 6 HELIX 25 25 LEU B 6 GLN B 16 1 11 HELIX 26 26 LEU B 31 GLU B 39 1 9 HELIX 27 27 GLU B 51 LYS B 65 1 15 HELIX 28 28 VAL B 76 SER B 80 1 5 HELIX 29 29 LEU B 82 ALA B 90 1 9 HELIX 30 30 VAL B 124 ILE B 132 1 9 HELIX 31 31 ILE B 142 THR B 159 1 18 HELIX 32 32 ALA B 169 ASP B 173 1 5 HELIX 33 33 ALA B 178 GLN B 182 5 5 HELIX 34 34 ALA B 194 ASP B 210 1 17 HELIX 35 35 ALA B 220 CYS B 222 5 3 HELIX 36 36 LYS B 228 THR B 238 1 11 HELIX 37 37 GLY B 265 LEU B 267 5 3 HELIX 38 38 PRO B 270 GLU B 277 1 8 HELIX 39 39 MET B 326 ALA B 340 1 15 HELIX 40 40 GLN B 367 ASN B 376 1 10 HELIX 41 41 THR B 390 GLN B 397 1 8 HELIX 42 42 PHE B 417 ILE B 432 1 16 HELIX 43 43 ASP B 444 ARG B 459 1 16 HELIX 44 44 THR B 475 ILE B 480 1 6 HELIX 45 45 GLN B 486 ASN B 488 5 3 HELIX 46 46 LEU B 496 PHE B 502 5 7 HELIX 47 47 THR B 515 THR B 522 1 8 HELIX 48 48 GLN B 547 GLN B 552 1 6 SHEET 1 A 2 GLU A 3 THR A 5 0 SHEET 2 A 2 ASN A 175 PRO A 177 -1 N VAL A 176 O ILE A 4 SHEET 1 B 4 SER A 68 THR A 73 0 SHEET 2 B 4 VAL A 95 VAL A 101 1 N LEU A 96 O SER A 68 SHEET 3 B 4 VAL A 163 PRO A 168 1 N VAL A 163 O HIS A 97 SHEET 4 B 4 THR A 135 MET A 138 1 N THR A 135 O TYR A 164 SHEET 1 C 7 TYR A 259 TYR A 263 0 SHEET 2 C 7 PRO A 241 THR A 245 1 N ALA A 242 O GLY A 260 SHEET 3 C 7 PRO A 214 ALA A 218 1 N ILE A 216 O PRO A 241 SHEET 4 C 7 LEU A 281 VAL A 285 1 N LEU A 281 O VAL A 215 SHEET 5 C 7 ILE A 306 PHE A 309 1 N VAL A 307 O ILE A 282 SHEET 6 C 7 HIS A 313 ILE A 316 -1 N LYS A 315 O GLU A 308 SHEET 7 C 7 ALA A 319 PRO A 322 -1 N PHE A 321 O MET A 314 SHEET 1 D 6 TYR A 405 ILE A 407 0 SHEET 2 D 6 VAL A 383 ALA A 386 1 N VAL A 384 O TYR A 405 SHEET 3 D 6 VAL A 438 GLY A 443 1 N ILE A 439 O VAL A 383 SHEET 4 D 6 TYR A 465 ASN A 470 1 N TYR A 465 O LEU A 440 SHEET 5 D 6 ILE A 533 MET A 539 1 N ARG A 534 O LEU A 466 SHEET 6 D 6 TYR A 507 VAL A 512 1 N GLU A 508 O ILE A 533 SHEET 1 E 2 GLU B 3 THR B 5 0 SHEET 2 E 2 ASN B 175 PRO B 177 -1 N VAL B 176 O ILE B 4 SHEET 1 F 5 VAL B 22 GLY B 24 0 SHEET 2 F 5 SER B 68 THR B 73 1 N CYS B 69 O PHE B 23 SHEET 3 F 5 VAL B 95 VAL B 101 1 N LEU B 96 O SER B 68 SHEET 4 F 5 VAL B 163 PRO B 168 1 N VAL B 163 O HIS B 97 SHEET 5 F 5 THR B 135 MET B 138 1 N THR B 135 O TYR B 164 SHEET 1 G 7 TYR B 259 TYR B 263 0 SHEET 2 G 7 PRO B 241 THR B 245 1 N ALA B 242 O GLY B 260 SHEET 3 G 7 PRO B 214 ALA B 218 1 N ILE B 216 O PRO B 241 SHEET 4 G 7 LEU B 281 VAL B 285 1 N LEU B 281 O VAL B 215 SHEET 5 G 7 ILE B 306 PHE B 309 1 N VAL B 307 O ILE B 282 SHEET 6 G 7 HIS B 313 ILE B 316 -1 N LYS B 315 O GLU B 308 SHEET 7 G 7 ALA B 319 PRO B 322 -1 N PHE B 321 O MET B 314 SHEET 1 H 6 TYR B 405 ILE B 407 0 SHEET 2 H 6 VAL B 383 ALA B 386 1 N VAL B 384 O TYR B 405 SHEET 3 H 6 VAL B 438 GLY B 443 1 N ILE B 439 O VAL B 383 SHEET 4 H 6 TYR B 465 ASN B 470 1 N TYR B 465 O LEU B 440 SHEET 5 H 6 ILE B 533 MET B 539 1 N ARG B 534 O LEU B 466 SHEET 6 H 6 TYR B 507 VAL B 512 1 N GLU B 508 O ILE B 533 LINK O2A TPP A 600 MG MG A 601 LINK O1B TPP A 600 MG MG A 601 LINK MG MG A 601 OD1 ASN A 471 LINK MG MG A 601 O GLY A 473 LINK MG MG A 601 O HOH A 602 LINK O2A TPP B 600 MG MG B 601 LINK O1B TPP B 600 MG MG B 601 LINK MG MG B 601 OD1 ASN B 471 LINK MG MG B 601 O GLY B 473 LINK MG MG B 601 O HOH B 602 CRYST1 145.049 119.700 81.283 90.00 120.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006894 0.000000 0.004014 0.00000 SCALE2 0.000000 0.008354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014236 0.00000