HEADER OXIDOREDUCTASE 31-JAN-05 1YPF TITLE CRYSTAL STRUCTURE OF GUAC (BA5705) FROM BACILLUS ANTHRACIS AT 1.8 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GUANOSINE MONOPHOSPHATE REDUCTASE, GUANOSINE 5'- COMPND 5 MONOPHOSPHATE OXIDOREDUCTASE; COMPND 6 EC: 1.7.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: GUAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS GUAC, PURINES, PYRIMIDINES, NUCLEOSIDES, NUCLEOTIDES, NUCLEOTIDE AND KEYWDS 2 NUCLEOSIDE INTERCONVERSIONS, SPINE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 PROTEOMICS IN EUROPE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GRENHA,V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN, AUTHOR 2 A.J.WILKINSON,K.S.WILSON,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 6 25-OCT-23 1YPF 1 SEQADV REVDAT 5 20-DEC-17 1YPF 1 JRNL REVDAT 4 13-JUL-11 1YPF 1 VERSN REVDAT 3 24-FEB-09 1YPF 1 VERSN REVDAT 2 14-NOV-06 1YPF 1 AUTHOR REMARK KEYWDS REVDAT 1 14-FEB-06 1YPF 0 JRNL AUTH R.GRENHA,V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN, JRNL AUTH 2 A.J.WILKINSON,K.S.WILSON JRNL TITL CRYSTAL STRUCTURE OF GUAC (BA5705) FROM BACILLUS ANTHRACIS JRNL TITL 2 AT 1.8 A RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 682 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 2.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4660 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4268 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6297 ; 1.627 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9968 ; 1.065 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 8.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.898 ;24.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;15.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 716 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5180 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 890 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1005 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4309 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2205 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2599 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 477 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.040 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3834 ; 2.140 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1224 ; 0.709 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4744 ; 2.760 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 4.190 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1549 ; 5.553 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10612 ; 2.343 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 689 ; 5.689 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8844 ; 2.792 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87000 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : RH COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MES, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.67600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 114.67600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 114.67600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 114.67600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 245 REMARK 465 LYS A 246 REMARK 465 ASP A 247 REMARK 465 GLY A 248 REMARK 465 LYS A 249 REMARK 465 LEU A 250 REMARK 465 TYR A 251 REMARK 465 LYS A 252 REMARK 465 GLU A 253 REMARK 465 TYR A 254 REMARK 465 PHE A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 ALA A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 465 PHE A 261 REMARK 465 GLN A 262 REMARK 465 LYS A 263 REMARK 465 GLY A 264 REMARK 465 GLU A 265 REMARK 465 LYS A 266 REMARK 465 LYS A 267 REMARK 465 PHE A 321 REMARK 465 ASN A 322 REMARK 465 GLY A 323 REMARK 465 ASP A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 TYR A 327 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 247 REMARK 465 GLY B 248 REMARK 465 LYS B 249 REMARK 465 LEU B 250 REMARK 465 TYR B 251 REMARK 465 LYS B 252 REMARK 465 GLU B 253 REMARK 465 TYR B 254 REMARK 465 PHE B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 ALA B 258 REMARK 465 SER B 259 REMARK 465 GLU B 260 REMARK 465 PHE B 261 REMARK 465 GLN B 262 REMARK 465 LYS B 263 REMARK 465 GLY B 264 REMARK 465 GLU B 265 REMARK 465 LYS B 266 REMARK 465 LYS B 267 REMARK 465 ASN B 268 REMARK 465 VAL B 269 REMARK 465 ILE B 320 REMARK 465 PHE B 321 REMARK 465 ASN B 322 REMARK 465 GLY B 323 REMARK 465 ASP B 324 REMARK 465 LYS B 325 REMARK 465 VAL B 326 REMARK 465 TYR B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -39.52 -39.05 REMARK 500 PRO A 39 41.44 -84.39 REMARK 500 GLN A 70 70.51 -119.43 REMARK 500 TRP A 188 34.08 -145.99 REMARK 500 VAL A 269 -126.48 60.67 REMARK 500 GLU A 270 51.15 -151.24 REMARK 500 MET A 274 -71.60 -97.96 REMARK 500 VAL A 276 89.21 -154.86 REMARK 500 GLU A 277 175.75 78.55 REMARK 500 PRO B 39 39.87 -82.52 REMARK 500 HIS B 109 40.75 76.66 REMARK 500 HIS B 121 78.11 -110.85 REMARK 500 TRP B 188 37.79 -148.29 REMARK 500 PHE B 275 -19.37 76.84 REMARK 500 VAL B 276 -149.12 -130.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 222 GLY A 223 135.64 REMARK 500 ASN A 268 VAL A 269 -144.44 REMARK 500 PRO B 240 GLY B 241 -40.89 REMARK 500 GLY B 271 LYS B 272 -146.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YPF A 1 327 UNP Q81JJ9 GUAC_BACAN 1 327 DBREF 1YPF B 1 327 UNP Q81JJ9 GUAC_BACAN 1 327 SEQADV 1YPF GLY A -8 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF SER A -7 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF SER A -6 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A -5 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A -4 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A -3 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A -2 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A -1 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS A 0 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF GLY B -8 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF SER B -7 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF SER B -6 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B -5 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B -4 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B -3 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B -2 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B -1 UNP Q81JJ9 CLONING ARTIFACT SEQADV 1YPF HIS B 0 UNP Q81JJ9 CLONING ARTIFACT SEQRES 1 A 336 GLY SER SER HIS HIS HIS HIS HIS HIS MET GLY ASN VAL SEQRES 2 A 336 PHE ASP TYR GLU ASP ILE GLN LEU ILE PRO ALA LYS CYS SEQRES 3 A 336 ILE VAL ASN SER ARG SER GLU CYS ASP THR THR VAL THR SEQRES 4 A 336 LEU GLY LYS HIS LYS PHE LYS LEU PRO VAL VAL PRO ALA SEQRES 5 A 336 ASN MET GLN THR ILE ILE ASP GLU ARG ILE ALA THR TYR SEQRES 6 A 336 LEU ALA GLU ASN ASN TYR PHE TYR ILE MET HIS ARG PHE SEQRES 7 A 336 GLN PRO GLU LYS ARG ILE SER PHE ILE ARG ASP MET GLN SEQRES 8 A 336 SER ARG GLY LEU ILE ALA SER ILE SER VAL GLY VAL LYS SEQRES 9 A 336 GLU ASP GLU TYR GLU PHE VAL GLN GLN LEU ALA ALA GLU SEQRES 10 A 336 HIS LEU THR PRO GLU TYR ILE THR ILE ASP ILE ALA HIS SEQRES 11 A 336 GLY HIS SER ASN ALA VAL ILE ASN MET ILE GLN HIS ILE SEQRES 12 A 336 LYS LYS HIS LEU PRO GLU SER PHE VAL ILE ALA GLY ASN SEQRES 13 A 336 VAL GLY THR PRO GLU ALA VAL ARG GLU LEU GLU ASN ALA SEQRES 14 A 336 GLY ALA ASP ALA THR LYS VAL GLY ILE GLY PRO GLY LYS SEQRES 15 A 336 VAL CYS ILE THR LYS ILE LYS THR GLY PHE GLY THR GLY SEQRES 16 A 336 GLY TRP GLN LEU ALA ALA LEU ARG TRP CYS ALA LYS ALA SEQRES 17 A 336 ALA SER LYS PRO ILE ILE ALA ASP GLY GLY ILE ARG THR SEQRES 18 A 336 ASN GLY ASP VAL ALA LYS SER ILE ARG PHE GLY ALA THR SEQRES 19 A 336 MET VAL MET ILE GLY SER LEU PHE ALA GLY HIS GLU GLU SEQRES 20 A 336 SER PRO GLY GLU THR ILE GLU LYS ASP GLY LYS LEU TYR SEQRES 21 A 336 LYS GLU TYR PHE GLY SER ALA SER GLU PHE GLN LYS GLY SEQRES 22 A 336 GLU LYS LYS ASN VAL GLU GLY LYS LYS MET PHE VAL GLU SEQRES 23 A 336 HIS LYS GLY SER LEU GLU ASP THR LEU ILE GLU MET GLU SEQRES 24 A 336 GLN ASP LEU GLN SER SER ILE SER TYR ALA GLY GLY THR SEQRES 25 A 336 LYS LEU ASP SER ILE ARG THR VAL ASP TYR VAL VAL VAL SEQRES 26 A 336 LYS ASN SER ILE PHE ASN GLY ASP LYS VAL TYR SEQRES 1 B 336 GLY SER SER HIS HIS HIS HIS HIS HIS MET GLY ASN VAL SEQRES 2 B 336 PHE ASP TYR GLU ASP ILE GLN LEU ILE PRO ALA LYS CYS SEQRES 3 B 336 ILE VAL ASN SER ARG SER GLU CYS ASP THR THR VAL THR SEQRES 4 B 336 LEU GLY LYS HIS LYS PHE LYS LEU PRO VAL VAL PRO ALA SEQRES 5 B 336 ASN MET GLN THR ILE ILE ASP GLU ARG ILE ALA THR TYR SEQRES 6 B 336 LEU ALA GLU ASN ASN TYR PHE TYR ILE MET HIS ARG PHE SEQRES 7 B 336 GLN PRO GLU LYS ARG ILE SER PHE ILE ARG ASP MET GLN SEQRES 8 B 336 SER ARG GLY LEU ILE ALA SER ILE SER VAL GLY VAL LYS SEQRES 9 B 336 GLU ASP GLU TYR GLU PHE VAL GLN GLN LEU ALA ALA GLU SEQRES 10 B 336 HIS LEU THR PRO GLU TYR ILE THR ILE ASP ILE ALA HIS SEQRES 11 B 336 GLY HIS SER ASN ALA VAL ILE ASN MET ILE GLN HIS ILE SEQRES 12 B 336 LYS LYS HIS LEU PRO GLU SER PHE VAL ILE ALA GLY ASN SEQRES 13 B 336 VAL GLY THR PRO GLU ALA VAL ARG GLU LEU GLU ASN ALA SEQRES 14 B 336 GLY ALA ASP ALA THR LYS VAL GLY ILE GLY PRO GLY LYS SEQRES 15 B 336 VAL CYS ILE THR LYS ILE LYS THR GLY PHE GLY THR GLY SEQRES 16 B 336 GLY TRP GLN LEU ALA ALA LEU ARG TRP CYS ALA LYS ALA SEQRES 17 B 336 ALA SER LYS PRO ILE ILE ALA ASP GLY GLY ILE ARG THR SEQRES 18 B 336 ASN GLY ASP VAL ALA LYS SER ILE ARG PHE GLY ALA THR SEQRES 19 B 336 MET VAL MET ILE GLY SER LEU PHE ALA GLY HIS GLU GLU SEQRES 20 B 336 SER PRO GLY GLU THR ILE GLU LYS ASP GLY LYS LEU TYR SEQRES 21 B 336 LYS GLU TYR PHE GLY SER ALA SER GLU PHE GLN LYS GLY SEQRES 22 B 336 GLU LYS LYS ASN VAL GLU GLY LYS LYS MET PHE VAL GLU SEQRES 23 B 336 HIS LYS GLY SER LEU GLU ASP THR LEU ILE GLU MET GLU SEQRES 24 B 336 GLN ASP LEU GLN SER SER ILE SER TYR ALA GLY GLY THR SEQRES 25 B 336 LYS LEU ASP SER ILE ARG THR VAL ASP TYR VAL VAL VAL SEQRES 26 B 336 LYS ASN SER ILE PHE ASN GLY ASP LYS VAL TYR FORMUL 3 HOH *682(H2 O) HELIX 1 1 ASP A 6 GLU A 8 5 3 HELIX 2 2 SER A 21 CYS A 25 5 5 HELIX 3 3 ASP A 50 ASN A 60 1 11 HELIX 4 4 GLN A 70 GLU A 72 5 3 HELIX 5 5 LYS A 73 ARG A 84 1 12 HELIX 6 6 LYS A 95 GLU A 108 1 14 HELIX 7 7 SER A 124 LEU A 138 1 15 HELIX 8 8 THR A 150 GLY A 161 1 12 HELIX 9 9 CYS A 175 GLY A 182 1 8 HELIX 10 10 TRP A 188 ALA A 199 1 12 HELIX 11 11 ASN A 213 PHE A 222 1 10 HELIX 12 12 GLY A 230 ALA A 234 5 5 HELIX 13 13 SER A 281 ALA A 300 1 20 HELIX 14 14 LYS A 304 VAL A 311 5 8 HELIX 15 15 ASP B 6 GLU B 8 5 3 HELIX 16 16 SER B 21 CYS B 25 5 5 HELIX 17 17 ASP B 50 ASN B 60 1 11 HELIX 18 18 GLN B 70 GLU B 72 5 3 HELIX 19 19 LYS B 73 ARG B 84 1 12 HELIX 20 20 LYS B 95 HIS B 109 1 15 HELIX 21 21 SER B 124 LEU B 138 1 15 HELIX 22 22 THR B 150 GLY B 161 1 12 HELIX 23 23 CYS B 175 GLY B 182 1 8 HELIX 24 24 TRP B 188 LYS B 198 1 11 HELIX 25 25 ASN B 213 PHE B 222 1 10 HELIX 26 26 GLY B 230 ALA B 234 5 5 HELIX 27 27 SER B 281 GLY B 301 1 21 HELIX 28 28 LYS B 304 VAL B 311 5 8 SHEET 1 A 2 ILE A 10 LEU A 12 0 SHEET 2 A 2 TYR A 313 VAL A 315 -1 O VAL A 314 N GLN A 11 SHEET 1 B 2 VAL A 29 LEU A 31 0 SHEET 2 B 2 HIS A 34 PHE A 36 -1 O PHE A 36 N VAL A 29 SHEET 1 C 7 VAL A 40 PRO A 42 0 SHEET 2 C 7 MET A 226 ILE A 229 1 O ILE A 229 N VAL A 41 SHEET 3 C 7 ILE A 204 ASP A 207 1 N ALA A 206 O MET A 228 SHEET 4 C 7 ALA A 164 VAL A 167 1 N VAL A 167 O ASP A 207 SHEET 5 C 7 PHE A 142 VAL A 148 1 N ALA A 145 O ALA A 164 SHEET 6 C 7 TYR A 114 ASP A 118 1 N ILE A 115 O PHE A 142 SHEET 7 C 7 SER A 89 VAL A 92 1 N VAL A 92 O THR A 116 SHEET 1 D 2 ILE B 10 LEU B 12 0 SHEET 2 D 2 TYR B 313 VAL B 315 -1 O VAL B 314 N GLN B 11 SHEET 1 E 2 VAL B 29 LEU B 31 0 SHEET 2 E 2 HIS B 34 PHE B 36 -1 O PHE B 36 N VAL B 29 SHEET 1 F 7 VAL B 40 PRO B 42 0 SHEET 2 F 7 MET B 226 ILE B 229 1 O ILE B 229 N VAL B 41 SHEET 3 F 7 ILE B 204 ASP B 207 1 N ALA B 206 O MET B 228 SHEET 4 F 7 ALA B 164 VAL B 167 1 N VAL B 167 O ASP B 207 SHEET 5 F 7 PHE B 142 VAL B 148 1 N ALA B 145 O ALA B 164 SHEET 6 F 7 TYR B 114 ASP B 118 1 N ILE B 117 O ILE B 144 SHEET 7 F 7 SER B 89 VAL B 92 1 N ILE B 90 O THR B 116 CISPEP 1 GLY A 146 ASN A 147 0 5.41 CISPEP 2 GLY B 146 ASN B 147 0 -3.27 CRYST1 114.676 114.676 52.570 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019022 0.00000