HEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)12-JAN-90 1YPI TITLE STRUCTURE OF YEAST TRIOSEPHOSPHATE ISOMERASE AT 1.9-ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) EXPDTA X-RAY DIFFRACTION AUTHOR T.ALBER,E.LOLIS,G.A.PETSKO REVDAT 4 14-FEB-24 1YPI 1 REMARK REVDAT 3 24-FEB-09 1YPI 1 VERSN REVDAT 2 01-APR-03 1YPI 1 JRNL REVDAT 1 15-JAN-91 1YPI 0 JRNL AUTH E.LOLIS,T.ALBER,R.C.DAVENPORT,D.ROSE,F.C.HARTMAN,G.A.PETSKO JRNL TITL STRUCTURE OF YEAST TRIOSEPHOSPHATE ISOMERASE AT 1.9-A JRNL TITL 2 RESOLUTION. JRNL REF BIOCHEMISTRY V. 29 6609 1990 JRNL REFN ISSN 0006-2960 JRNL PMID 2204417 JRNL DOI 10.1021/BI00480A009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.LOLIS,G.A.PETSKO REMARK 1 TITL CRYSTALLOGRAPHIC ANALYSIS OF THE COMPLEX BETWEEN REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE AND 2-PHOSPHOGLYCOLATE AT REMARK 1 TITL 3 2.5-ANGSTROMS RESOLUTION. IMPLICATIONS FOR CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 29 6619 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.C.ALBER,R.C.DAVENPORTJUNIOR,D.A.GIAMMONA,E.LOLIS, REMARK 1 AUTH 2 G.A.PETSKO,D.RINGE REMARK 1 TITL CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF YEAST REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE. WHAT CAN WE LEARN ABOUT CATALYSIS REMARK 1 TITL 3 FROM A (DOUBLE QUOTE)SIMPLE(DOUBLE QUOTE) ENZYME (QUESTION REMARK 1 TITL 4 MARK) REMARK 1 REF COLD SPRING HARBOR V. 52 603 1987 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.ALBER,F.C.HARTMAN,R.M.JOHNSON,G.A.PETSKO,D.TSERNOGLOU REMARK 1 TITL CRYSTALLIZATION OF YEAST TRIOSE PHOSPHATE ISOMERASE FROM REMARK 1 TITL 2 POLYETHYLENE GLYCOL. PROTEIN CRYSTAL FORMATION FOLLOWING REMARK 1 TITL 3 PHASE SEPARATION REMARK 1 REF J.BIOL.CHEM. V. 256 1356 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.ALBER,D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.PHILLIPS, REMARK 1 AUTH 2 P.S.RIVERS,I.A.WILSON REMARK 1 TITL ON THE THREE-DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM REMARK 1 TITL 2 OF TRIOSE PHOSPHATE ISOMERASE REMARK 1 REF PHILOS.TRANS.R.SOC.LONDON, V. 293 159 1981 REMARK 1 REF 2 SER.B REMARK 1 REFN ISSN 0080-4622 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.025 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.048 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.055 ; 0.052 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES LYS A 12, ASN A 28, ASN A 35, REMARK 3 HIS A 103, ARG B 3, HIS B 103, LEU B 131, ASP B 222 HAVE REMARK 3 DIHEDRAL ANGLES THAT ARE SIGNIFICANTLY OUTSIDE THE RAMACHANDRAN REMARK 3 LIMITS. REMARK 4 REMARK 4 1YPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO REMARK 300 CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 82 O HOH A 705 1.97 REMARK 500 O PHE B 102 O HOH B 755 1.99 REMARK 500 O HOH B 640 O HOH B 755 2.00 REMARK 500 OH TYR B 67 O HOH B 662 2.15 REMARK 500 OE1 GLU B 104 O HOH B 754 2.17 REMARK 500 OE1 GLU A 104 O HOH A 718 2.17 REMARK 500 O LEU B 131 N LYS B 135 2.18 REMARK 500 O GLU A 25 O LEU A 27 2.19 REMARK 500 NH1 ARG B 189 O LEU B 204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 239 OG SER B 215 1455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CD GLU A 25 OE2 0.067 REMARK 500 GLU A 34 N GLU A 34 CA 0.129 REMARK 500 GLU A 34 CD GLU A 34 OE2 0.070 REMARK 500 PRO A 42 CD PRO A 42 N 0.090 REMARK 500 TYR A 46 CG TYR A 46 CD2 0.101 REMARK 500 SER A 52 CA SER A 52 CB 0.105 REMARK 500 GLU A 97 CD GLU A 97 OE2 0.071 REMARK 500 GLU A 129 CG GLU A 129 CD -0.100 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.087 REMARK 500 GLU A 133 CD GLU A 133 OE2 0.077 REMARK 500 GLU A 144 CG GLU A 144 CD 0.099 REMARK 500 GLU A 144 CD GLU A 144 OE2 0.112 REMARK 500 ARG A 145 CZ ARG A 145 NH1 0.090 REMARK 500 GLU A 152 CD GLU A 152 OE2 0.113 REMARK 500 GLU A 153 CD GLU A 153 OE1 0.070 REMARK 500 ASP A 156 C ASP A 156 O 0.125 REMARK 500 GLU A 165 CD GLU A 165 OE1 -0.106 REMARK 500 GLU A 165 CD GLU A 165 OE2 0.094 REMARK 500 ASN A 216 CA ASN A 216 CB 0.188 REMARK 500 GLU A 239 CD GLU A 239 OE1 -0.119 REMARK 500 THR B 29 C THR B 29 O 0.118 REMARK 500 SER B 31 CB SER B 31 OG 0.079 REMARK 500 GLU B 34 CG GLU B 34 CD -0.093 REMARK 500 GLU B 34 CD GLU B 34 OE2 0.078 REMARK 500 GLU B 37 CD GLU B 37 OE2 0.091 REMARK 500 GLU B 77 CD GLU B 77 OE2 0.086 REMARK 500 GLY B 87 C GLY B 87 O 0.122 REMARK 500 GLU B 97 CD GLU B 97 OE1 -0.087 REMARK 500 ARG B 99 CZ ARG B 99 NH2 0.086 REMARK 500 GLY B 128 CA GLY B 128 C 0.101 REMARK 500 LEU B 131 N LEU B 131 CA 0.138 REMARK 500 GLU B 132 CD GLU B 132 OE2 0.084 REMARK 500 GLU B 144 CD GLU B 144 OE1 -0.073 REMARK 500 GLU B 144 CD GLU B 144 OE2 0.082 REMARK 500 GLU B 153 CD GLU B 153 OE2 0.108 REMARK 500 TRP B 157 CE3 TRP B 157 CZ3 0.112 REMARK 500 GLU B 165 CD GLU B 165 OE1 -0.085 REMARK 500 GLU B 165 CD GLU B 165 OE2 0.119 REMARK 500 GLU B 179 CD GLU B 179 OE2 0.074 REMARK 500 SER B 194 CA SER B 194 CB -0.097 REMARK 500 SER B 194 CB SER B 194 OG 0.083 REMARK 500 LYS B 199 N LYS B 199 CA 0.136 REMARK 500 GLU B 203 CD GLU B 203 OE2 0.088 REMARK 500 ARG B 205 NE ARG B 205 CZ 0.097 REMARK 500 SER B 211 CB SER B 211 OG 0.079 REMARK 500 SER B 215 CB SER B 215 OG 0.107 REMARK 500 GLY B 232 N GLY B 232 CA -0.123 REMARK 500 SER B 235 CB SER B 235 OG -0.148 REMARK 500 GLU B 239 CD GLU B 239 OE1 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 34 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 GLU A 34 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 GLU A 37 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 46 CB - CG - CD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 SER A 52 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU A 53 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 TYR A 67 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASN A 78 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 ASN A 78 CA - C - O ANGL. DEV. = -14.4 DEGREES REMARK 500 ASN A 78 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 VAL A 86 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 VAL A 91 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 VAL A 91 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ILE A 92 CA - CB - CG2 ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR A 101 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR A 101 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 PHE A 108 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ILE A 109 CA - CB - CG1 ANGL. DEV. = -13.3 DEGREES REMARK 500 GLU A 129 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS A 134 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 134 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 THR A 139 CA - CB - OG1 ANGL. DEV. = -15.0 DEGREES REMARK 500 GLU A 144 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 GLU A 144 OE1 - CD - OE2 ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 156 CA - C - N ANGL. DEV. = 16.7 DEGREES REMARK 500 VAL A 161 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP A 183 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 SER A 187 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 PHE A 191 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 LEU A 196 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 198 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 198 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASN A 216 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ASN A 216 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 THR A 219 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 LYS A 221 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 LYS A 221 CD - CE - NZ ANGL. DEV. = 24.7 DEGREES REMARK 500 ASP A 222 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LYS A 223 CB - CG - CD ANGL. DEV. = 19.8 DEGREES REMARK 500 LEU A 230 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 247 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 110 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -139.16 65.37 REMARK 500 LEU A 27 -167.89 -68.89 REMARK 500 ASN A 28 -58.23 78.04 REMARK 500 ASN A 35 21.06 134.86 REMARK 500 ASN A 65 161.80 179.94 REMARK 500 SER A 100 -70.65 -85.54 REMARK 500 HIS A 103 69.27 19.65 REMARK 500 PRO A 166 84.29 -69.26 REMARK 500 ALA A 217 -39.81 -33.01 REMARK 500 ARG B 3 73.61 73.46 REMARK 500 LYS B 12 -160.89 60.21 REMARK 500 PRO B 33 173.89 -53.28 REMARK 500 ASN B 65 152.80 176.04 REMARK 500 SER B 100 -78.01 -91.77 REMARK 500 HIS B 103 82.60 24.08 REMARK 500 GLN B 119 -8.35 -58.65 REMARK 500 LEU B 131 -59.82 115.36 REMARK 500 TRP B 157 40.34 -106.37 REMARK 500 THR B 172 -21.84 -36.63 REMARK 500 ASP B 222 -1.94 64.91 REMARK 500 GLU B 239 1.08 -69.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEETS PRESENTED AS *BLA* AND *BLB* ON SHEET RECORDS REMARK 700 BELOW ARE ACTUALLY EIGHT-STRANDED BETA-BARRELS. THIS IS REMARK 700 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND REMARK 700 LAST STRANDS ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERING IN EACH CHAIN IS SEQUENTIAL STARTING REMARK 999 WITH 2. DBREF 1YPI A 2 248 UNP P00942 TPIS_YEAST 1 247 DBREF 1YPI B 2 248 UNP P00942 TPIS_YEAST 1 247 SEQRES 1 A 247 ALA ARG THR PHE PHE VAL GLY GLY ASN PHE LYS LEU ASN SEQRES 2 A 247 GLY SER LYS GLN SER ILE LYS GLU ILE VAL GLU ARG LEU SEQRES 3 A 247 ASN THR ALA SER ILE PRO GLU ASN VAL GLU VAL VAL ILE SEQRES 4 A 247 CYS PRO PRO ALA THR TYR LEU ASP TYR SER VAL SER LEU SEQRES 5 A 247 VAL LYS LYS PRO GLN VAL THR VAL GLY ALA GLN ASN ALA SEQRES 6 A 247 TYR LEU LYS ALA SER GLY ALA PHE THR GLY GLU ASN SER SEQRES 7 A 247 VAL ASP GLN ILE LYS ASP VAL GLY ALA LYS TRP VAL ILE SEQRES 8 A 247 LEU GLY HIS SER GLU ARG ARG SER TYR PHE HIS GLU ASP SEQRES 9 A 247 ASP LYS PHE ILE ALA ASP LYS THR LYS PHE ALA LEU GLY SEQRES 10 A 247 GLN GLY VAL GLY VAL ILE LEU CYS ILE GLY GLU THR LEU SEQRES 11 A 247 GLU GLU LYS LYS ALA GLY LYS THR LEU ASP VAL VAL GLU SEQRES 12 A 247 ARG GLN LEU ASN ALA VAL LEU GLU GLU VAL LYS ASP TRP SEQRES 13 A 247 THR ASN VAL VAL VAL ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 247 GLY THR GLY LEU ALA ALA THR PRO GLU ASP ALA GLN ASP SEQRES 15 A 247 ILE HIS ALA SER ILE ARG LYS PHE LEU ALA SER LYS LEU SEQRES 16 A 247 GLY ASP LYS ALA ALA SER GLU LEU ARG ILE LEU TYR GLY SEQRES 17 A 247 GLY SER ALA ASN GLY SER ASN ALA VAL THR PHE LYS ASP SEQRES 18 A 247 LYS ALA ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN SER ARG ASN SEQRES 1 B 247 ALA ARG THR PHE PHE VAL GLY GLY ASN PHE LYS LEU ASN SEQRES 2 B 247 GLY SER LYS GLN SER ILE LYS GLU ILE VAL GLU ARG LEU SEQRES 3 B 247 ASN THR ALA SER ILE PRO GLU ASN VAL GLU VAL VAL ILE SEQRES 4 B 247 CYS PRO PRO ALA THR TYR LEU ASP TYR SER VAL SER LEU SEQRES 5 B 247 VAL LYS LYS PRO GLN VAL THR VAL GLY ALA GLN ASN ALA SEQRES 6 B 247 TYR LEU LYS ALA SER GLY ALA PHE THR GLY GLU ASN SER SEQRES 7 B 247 VAL ASP GLN ILE LYS ASP VAL GLY ALA LYS TRP VAL ILE SEQRES 8 B 247 LEU GLY HIS SER GLU ARG ARG SER TYR PHE HIS GLU ASP SEQRES 9 B 247 ASP LYS PHE ILE ALA ASP LYS THR LYS PHE ALA LEU GLY SEQRES 10 B 247 GLN GLY VAL GLY VAL ILE LEU CYS ILE GLY GLU THR LEU SEQRES 11 B 247 GLU GLU LYS LYS ALA GLY LYS THR LEU ASP VAL VAL GLU SEQRES 12 B 247 ARG GLN LEU ASN ALA VAL LEU GLU GLU VAL LYS ASP TRP SEQRES 13 B 247 THR ASN VAL VAL VAL ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 247 GLY THR GLY LEU ALA ALA THR PRO GLU ASP ALA GLN ASP SEQRES 15 B 247 ILE HIS ALA SER ILE ARG LYS PHE LEU ALA SER LYS LEU SEQRES 16 B 247 GLY ASP LYS ALA ALA SER GLU LEU ARG ILE LEU TYR GLY SEQRES 17 B 247 GLY SER ALA ASN GLY SER ASN ALA VAL THR PHE LYS ASP SEQRES 18 B 247 LYS ALA ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN SER ARG ASN FORMUL 3 HOH *119(H2 O) HELIX 1 AA SER A 16 ALA A 30 1 15 HELIX 2 BA TYR A 46 VAL A 54 1 9 HELIX 3 CA SER A 79 GLY A 87 1 9 HELIX 4 D1A HIS A 95 PHE A 102 1 8 HELIX 5 D2A ASP A 105 GLY A 120 1 16 HELIX 6 E1A THR A 130 GLY A 137 1 8 HELIX 7 E2A LYS A 138 VAL A 154 1 17 HELIX 8 F1A THR A 177 LEU A 196 1 20 HELIX 9 F2A GLY A 197 LEU A 204 1 8 HELIX 10 GA ASN A 213 LYS A 221 5 9 HELIX 11 H1A GLY A 232 LYS A 237 5 6 HELIX 12 H2A GLU A 239 SER A 246 1 8 HELIX 13 AB SER B 16 ALA B 30 1 15 HELIX 14 BB TYR B 46 VAL B 54 1 9 HELIX 15 CB SER B 79 GLY B 87 1 9 HELIX 16 D1B HIS B 95 PHE B 102 1 8 HELIX 17 D2B ASP B 105 GLY B 120 1 16 HELIX 18 E1B THR B 130 GLY B 137 1 8 HELIX 19 E2B LYS B 138 VAL B 154 1 17 HELIX 20 F1B THR B 177 LEU B 196 1 20 HELIX 21 F2B GLY B 197 LEU B 204 1 8 HELIX 22 GB ASN B 213 LYS B 221 5 9 HELIX 23 H1B GLY B 232 LYS B 237 5 6 HELIX 24 H2B GLU B 239 SER B 246 1 8 SHEET 1 BLA 9 PHE A 5 PHE A 11 0 SHEET 2 BLA 9 GLU A 37 CYS A 41 1 N VAL A 39 O VAL A 7 SHEET 3 BLA 9 GLN A 58 ALA A 63 1 N THR A 60 O VAL A 38 SHEET 4 BLA 9 LYS A 89 LEU A 93 1 N TRP A 90 O VAL A 61 SHEET 5 BLA 9 GLY A 122 ILE A 127 1 N ILE A 124 O VAL A 91 SHEET 6 BLA 9 ASN A 159 GLU A 165 1 N ALA A 163 O LEU A 125 SHEET 7 BLA 9 ARG A 205 GLY A 209 1 N LEU A 207 O VAL A 162 SHEET 8 BLA 9 ASP A 227 VAL A 231 1 N LEU A 230 O TYR A 208 SHEET 9 BLA 9 PHE A 5 PHE A 11 1 N GLY A 8 O PHE A 229 SHEET 1 BLB 9 PHE B 5 PHE B 11 0 SHEET 2 BLB 9 GLU B 37 CYS B 41 1 N VAL B 39 O VAL B 7 SHEET 3 BLB 9 GLN B 58 ALA B 63 1 N THR B 60 O VAL B 38 SHEET 4 BLB 9 LYS B 89 LEU B 93 1 N TRP B 90 O VAL B 61 SHEET 5 BLB 9 GLY B 122 ILE B 127 1 N ILE B 124 O VAL B 91 SHEET 6 BLB 9 ASN B 159 GLU B 165 1 N ALA B 163 O LEU B 125 SHEET 7 BLB 9 ARG B 205 GLY B 209 1 N LEU B 207 O VAL B 162 SHEET 8 BLB 9 ASP B 227 VAL B 231 1 N LEU B 230 O TYR B 208 SHEET 9 BLB 9 PHE B 5 PHE B 11 1 N GLY B 8 O PHE B 229 CRYST1 61.150 98.550 49.260 90.00 91.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016353 0.000000 0.000343 0.00000 SCALE2 0.000000 0.010147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020305 0.00000 MTRIX1 1 -1.000040 -0.002170 -0.000790 120.42589 1 MTRIX2 1 -0.001700 0.435020 0.900430 -12.98956 1 MTRIX3 1 -0.002260 0.902810 -0.435810 20.80916 1