HEADER IMMUNE SYSTEM 31-JAN-05 1YPO TITLE HUMAN OXIDIZED LOW DENSITY LIPOPROTEIN RECEPTOR LOX-1 P3 1 21 SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDISED LOW DENSITY LIPOPROTEIN (LECTIN-LIKE) RECEPTOR 1; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: C-TYPE LECTIN-LIKE DOMAIN (RESIDUES 142-273); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS OXIDIZED LOW DENSITY LIPOPROTEIN RECEPTOR, LOX-1, CTLD, C-TYPE LECTIN KEYWDS 2 LIKE DOMAIN, NK CELL RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,F.G.ADSIT,J.C.BOYINGTON REVDAT 5 23-AUG-23 1YPO 1 SEQADV REVDAT 4 24-FEB-09 1YPO 1 VERSN REVDAT 3 17-MAY-05 1YPO 1 JRNL REVDAT 2 15-FEB-05 1YPO 1 HEADER REVDAT 1 08-FEB-05 1YPO 0 JRNL AUTH H.PARK,F.G.ADSIT,J.C.BOYINGTON JRNL TITL THE 1.4 ANGSTROM CRYSTAL STRUCTURE OF THE HUMAN OXIDIZED LOW JRNL TITL 2 DENSITY LIPOPROTEIN RECEPTOR LOX-1. JRNL REF J.BIOL.CHEM. V. 280 13593 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15695803 JRNL DOI 10.1074/JBC.M500768200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 153980.690 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 22145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3272 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 26.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24056 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : 0.53200 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, BIS-TRIS, PEG 10K, REMARK 280 HEPES, NACL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.40000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 143.40000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER (CHAIN A AND B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 141 REMARK 465 ALA A 272 REMARK 465 MET D 141 REMARK 465 ARG D 271 REMARK 465 ALA D 272 REMARK 465 MET E 141 REMARK 465 ARG E 271 REMARK 465 ALA E 272 REMARK 465 ARG F 271 REMARK 465 ALA F 272 REMARK 465 MET H 141 REMARK 465 ARG H 271 REMARK 465 ALA H 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 270 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 -12.34 89.74 REMARK 500 SER A 159 150.30 -39.08 REMARK 500 ALA A 177 -158.42 -130.62 REMARK 500 PHE A 190 -72.58 -59.56 REMARK 500 ASP A 219 -12.48 -48.04 REMARK 500 HIS A 226 43.07 70.07 REMARK 500 ARG A 248 55.99 35.18 REMARK 500 ILE A 257 47.18 -86.40 REMARK 500 LYS A 267 137.09 -36.64 REMARK 500 ALA A 268 -105.41 -60.41 REMARK 500 ASN A 269 125.04 160.46 REMARK 500 LEU A 270 86.10 155.71 REMARK 500 ALA B 142 82.72 66.20 REMARK 500 TYR B 197 37.70 -84.78 REMARK 500 SER B 199 18.28 -147.80 REMARK 500 ARG B 231 -150.70 -115.23 REMARK 500 SER B 235 61.08 -116.73 REMARK 500 ARG B 248 32.27 36.31 REMARK 500 ASP C 147 -33.39 79.46 REMARK 500 SER C 159 134.00 -33.19 REMARK 500 SER C 184 146.07 -173.05 REMARK 500 PRO C 211 4.30 -64.73 REMARK 500 ASP C 219 -6.86 -59.87 REMARK 500 ARG C 231 -151.56 -100.53 REMARK 500 ARG C 248 19.77 51.00 REMARK 500 ASP D 147 -11.78 88.97 REMARK 500 SER D 159 148.10 -39.06 REMARK 500 LEU D 180 135.20 -39.25 REMARK 500 SER D 184 166.17 173.15 REMARK 500 SER D 199 36.43 -142.32 REMARK 500 SER D 207 173.05 178.15 REMARK 500 PRO D 211 1.90 -58.96 REMARK 500 TRP D 217 -160.54 -77.48 REMARK 500 HIS D 226 31.05 81.04 REMARK 500 LEU D 227 -73.25 -113.44 REMARK 500 VAL D 234 37.22 -76.73 REMARK 500 SER D 235 -32.40 -154.15 REMARK 500 PRO D 239 -10.00 -56.66 REMARK 500 PHE D 261 -164.07 -58.22 REMARK 500 ASP E 147 -26.21 77.36 REMARK 500 SER E 162 71.45 -111.14 REMARK 500 ALA E 177 -157.60 -130.75 REMARK 500 LEU E 180 128.21 -37.38 REMARK 500 SER E 184 148.74 160.27 REMARK 500 TYR E 197 32.76 -97.51 REMARK 500 ARG E 208 132.44 175.89 REMARK 500 PRO E 211 -32.28 -20.37 REMARK 500 ALA E 233 25.13 -60.07 REMARK 500 VAL E 234 19.60 -65.31 REMARK 500 SER E 235 -48.12 -133.30 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YPQ RELATED DB: PDB REMARK 900 RELATED ID: 1YPU RELATED DB: PDB DBREF 1YPO A 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO B 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO C 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO D 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO E 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO F 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO G 142 272 UNP P78380 P78380_HUMAN 142 272 DBREF 1YPO H 142 272 UNP P78380 P78380_HUMAN 142 272 SEQADV 1YPO MET A 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET B 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET C 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET D 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET E 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET F 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET G 141 UNP P78380 INITIATING METHIONINE SEQADV 1YPO MET H 141 UNP P78380 INITIATING METHIONINE SEQRES 1 A 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 A 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 A 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 A 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 A 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 A 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 A 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 A 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 A 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 A 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 A 132 ARG ALA SEQRES 1 B 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 B 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 B 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 B 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 B 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 B 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 B 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 B 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 B 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 B 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 B 132 ARG ALA SEQRES 1 C 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 C 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 C 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 C 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 C 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 C 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 C 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 C 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 C 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 C 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 C 132 ARG ALA SEQRES 1 D 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 D 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 D 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 D 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 D 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 D 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 D 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 D 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 D 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 D 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 D 132 ARG ALA SEQRES 1 E 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 E 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 E 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 E 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 E 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 E 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 E 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 E 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 E 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 E 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 E 132 ARG ALA SEQRES 1 F 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 F 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 F 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 F 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 F 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 F 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 F 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 F 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 F 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 F 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 F 132 ARG ALA SEQRES 1 G 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 G 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 G 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 G 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 G 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 G 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 G 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 G 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 G 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 G 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 G 132 ARG ALA SEQRES 1 H 132 MET ALA PRO CYS PRO GLN ASP TRP ILE TRP HIS GLY GLU SEQRES 2 H 132 ASN CYS TYR LEU PHE SER SER GLY SER PHE ASN TRP GLU SEQRES 3 H 132 LYS SER GLN GLU LYS CYS LEU SER LEU ASP ALA LYS LEU SEQRES 4 H 132 LEU LYS ILE ASN SER THR ALA ASP LEU ASP PHE ILE GLN SEQRES 5 H 132 GLN ALA ILE SER TYR SER SER PHE PRO PHE TRP MET GLY SEQRES 6 H 132 LEU SER ARG ARG ASN PRO SER TYR PRO TRP LEU TRP GLU SEQRES 7 H 132 ASP GLY SER PRO LEU MET PRO HIS LEU PHE ARG VAL ARG SEQRES 8 H 132 GLY ALA VAL SER GLN THR TYR PRO SER GLY THR CYS ALA SEQRES 9 H 132 TYR ILE GLN ARG GLY ALA VAL TYR ALA GLU ASN CYS ILE SEQRES 10 H 132 LEU ALA ALA PHE SER ILE CYS GLN LYS LYS ALA ASN LEU SEQRES 11 H 132 ARG ALA HELIX 1 1 ASN A 164 SER A 174 1 11 HELIX 2 2 SER A 184 ILE A 195 1 12 HELIX 3 3 ASN B 164 LEU B 175 1 12 HELIX 4 4 SER B 184 SER B 196 1 13 HELIX 5 5 ASN C 164 SER C 174 1 11 HELIX 6 6 SER C 184 ILE C 195 1 12 HELIX 7 7 ASN D 164 SER D 174 1 11 HELIX 8 8 SER D 184 ALA D 194 1 11 HELIX 9 9 TRP E 165 LEU E 175 1 11 HELIX 10 10 SER E 184 ALA E 194 1 11 HELIX 11 11 ASN F 164 LEU F 175 1 12 HELIX 12 12 SER F 184 SER F 196 1 13 HELIX 13 13 ASN G 164 LEU G 175 1 12 HELIX 14 14 SER G 184 SER G 196 1 13 HELIX 15 15 ASN H 164 LEU H 175 1 12 HELIX 16 16 SER H 184 ILE H 195 1 12 SHEET 1 A 5 ILE A 149 HIS A 151 0 SHEET 2 A 5 ASN A 154 PHE A 158 -1 O ASN A 154 N HIS A 151 SHEET 3 A 5 PHE A 261 LYS A 267 -1 O CYS A 264 N LEU A 157 SHEET 4 A 5 PHE A 202 ARG A 208 1 N TRP A 203 O PHE A 261 SHEET 5 A 5 LEU A 216 TRP A 217 -1 O LEU A 216 N SER A 207 SHEET 1 B 6 LYS A 178 LEU A 179 0 SHEET 2 B 6 PHE A 261 LYS A 267 -1 O GLN A 265 N LYS A 178 SHEET 3 B 6 PHE A 202 ARG A 208 1 N TRP A 203 O PHE A 261 SHEET 4 B 6 THR A 242 GLN A 247 -1 O THR A 242 N ARG A 208 SHEET 5 B 6 ALA A 250 ASN A 255 -1 O ALA A 250 N GLN A 247 SHEET 6 B 6 ARG A 231 GLY A 232 1 N ARG A 231 O VAL A 251 SHEET 1 C 5 ILE B 149 HIS B 151 0 SHEET 2 C 5 ASN B 154 PHE B 158 -1 O TYR B 156 N ILE B 149 SHEET 3 C 5 PHE B 261 LYS B 267 -1 O CYS B 264 N LEU B 157 SHEET 4 C 5 PRO B 201 ARG B 208 1 N TRP B 203 O PHE B 261 SHEET 5 C 5 LEU B 216 TRP B 217 -1 O LEU B 216 N SER B 207 SHEET 1 D 6 LYS B 178 LEU B 179 0 SHEET 2 D 6 PHE B 261 LYS B 267 -1 O GLN B 265 N LYS B 178 SHEET 3 D 6 PRO B 201 ARG B 208 1 N TRP B 203 O PHE B 261 SHEET 4 D 6 THR B 242 GLN B 247 -1 O THR B 242 N ARG B 208 SHEET 5 D 6 ALA B 250 ASN B 255 -1 O TYR B 252 N TYR B 245 SHEET 6 D 6 ARG B 231 GLY B 232 1 N ARG B 231 O ALA B 253 SHEET 1 E 4 ILE C 149 HIS C 151 0 SHEET 2 E 4 ASN C 154 PHE C 158 -1 O TYR C 156 N ILE C 149 SHEET 3 E 4 PHE C 261 LYS C 267 -1 O CYS C 264 N LEU C 157 SHEET 4 E 4 LYS C 178 LEU C 179 -1 N LYS C 178 O GLN C 265 SHEET 1 F 7 ILE C 149 HIS C 151 0 SHEET 2 F 7 ASN C 154 PHE C 158 -1 O TYR C 156 N ILE C 149 SHEET 3 F 7 PHE C 261 LYS C 267 -1 O CYS C 264 N LEU C 157 SHEET 4 F 7 PHE C 202 ARG C 208 1 N TRP C 203 O PHE C 261 SHEET 5 F 7 THR C 242 GLN C 247 -1 O THR C 242 N ARG C 208 SHEET 6 F 7 ALA C 250 ASN C 255 -1 O GLU C 254 N CYS C 243 SHEET 7 F 7 ARG C 231 GLY C 232 1 N ARG C 231 O VAL C 251 SHEET 1 G 4 ILE D 149 HIS D 151 0 SHEET 2 G 4 ASN D 154 PHE D 158 -1 O TYR D 156 N ILE D 149 SHEET 3 G 4 PHE D 261 LYS D 267 -1 O CYS D 264 N LEU D 157 SHEET 4 G 4 LYS D 178 LEU D 179 -1 N LYS D 178 O GLN D 265 SHEET 1 H 7 ILE D 149 HIS D 151 0 SHEET 2 H 7 ASN D 154 PHE D 158 -1 O TYR D 156 N ILE D 149 SHEET 3 H 7 PHE D 261 LYS D 267 -1 O CYS D 264 N LEU D 157 SHEET 4 H 7 PHE D 202 ARG D 208 1 N TRP D 203 O PHE D 261 SHEET 5 H 7 THR D 242 GLN D 247 -1 O THR D 242 N ARG D 208 SHEET 6 H 7 ALA D 250 ASN D 255 -1 O ALA D 250 N GLN D 247 SHEET 7 H 7 VAL D 230 GLY D 232 1 N ARG D 231 O ALA D 253 SHEET 1 I13 ILE E 149 HIS E 151 0 SHEET 2 I13 ASN E 154 PHE E 158 -1 O TYR E 156 N ILE E 149 SHEET 3 I13 ALA E 259 LYS E 267 -1 O CYS E 264 N LEU E 157 SHEET 4 I13 PHE E 163 ASN E 164 -1 N PHE E 163 O ALA E 260 SHEET 5 I13 ALA E 259 LYS E 267 -1 O ALA E 260 N PHE E 163 SHEET 6 I13 LYS E 178 LEU E 179 -1 N LYS E 178 O GLN E 265 SHEET 7 I13 ALA E 259 LYS E 267 -1 O GLN E 265 N LYS E 178 SHEET 8 I13 PHE E 202 ARG E 208 1 N TRP E 203 O PHE E 261 SHEET 9 I13 LEU E 216 TRP E 217 -1 O LEU E 216 N SER E 207 SHEET 10 I13 PHE E 202 ARG E 208 -1 N SER E 207 O LEU E 216 SHEET 11 I13 THR E 242 GLN E 247 -1 O ILE E 246 N PHE E 202 SHEET 12 I13 ALA E 250 ASN E 255 -1 O TYR E 252 N TYR E 245 SHEET 13 I13 VAL E 230 GLY E 232 1 N ARG E 231 O ALA E 253 SHEET 1 J 4 ILE F 149 HIS F 151 0 SHEET 2 J 4 ASN F 154 PHE F 158 -1 O TYR F 156 N ILE F 149 SHEET 3 J 4 PHE F 261 LYS F 267 -1 O LYS F 266 N CYS F 155 SHEET 4 J 4 LYS F 178 LEU F 179 -1 N LYS F 178 O GLN F 265 SHEET 1 K 7 ILE F 149 HIS F 151 0 SHEET 2 K 7 ASN F 154 PHE F 158 -1 O TYR F 156 N ILE F 149 SHEET 3 K 7 PHE F 261 LYS F 267 -1 O LYS F 266 N CYS F 155 SHEET 4 K 7 PHE F 202 ARG F 208 1 N TRP F 203 O PHE F 261 SHEET 5 K 7 THR F 242 GLN F 247 -1 O ILE F 246 N PHE F 202 SHEET 6 K 7 ALA F 250 ASN F 255 -1 O ALA F 250 N GLN F 247 SHEET 7 K 7 ARG F 231 GLY F 232 1 N ARG F 231 O ALA F 253 SHEET 1 L 4 ILE G 149 HIS G 151 0 SHEET 2 L 4 ASN G 154 PHE G 158 -1 O TYR G 156 N ILE G 149 SHEET 3 L 4 PHE G 261 LYS G 267 -1 O CYS G 264 N LEU G 157 SHEET 4 L 4 LYS G 178 LEU G 179 -1 N LYS G 178 O GLN G 265 SHEET 1 M 7 ILE G 149 HIS G 151 0 SHEET 2 M 7 ASN G 154 PHE G 158 -1 O TYR G 156 N ILE G 149 SHEET 3 M 7 PHE G 261 LYS G 267 -1 O CYS G 264 N LEU G 157 SHEET 4 M 7 PHE G 202 ARG G 208 1 N TRP G 203 O PHE G 261 SHEET 5 M 7 THR G 242 GLN G 247 -1 O ILE G 246 N PHE G 202 SHEET 6 M 7 ALA G 250 ALA G 253 -1 O TYR G 252 N TYR G 245 SHEET 7 M 7 ARG G 231 GLY G 232 1 O ARG G 231 N VAL G 251 SHEET 1 N 4 ILE H 149 HIS H 151 0 SHEET 2 N 4 ASN H 154 PHE H 158 -1 O TYR H 156 N ILE H 149 SHEET 3 N 4 PHE H 261 LYS H 267 -1 O LYS H 266 N CYS H 155 SHEET 4 N 4 LYS H 178 LEU H 179 -1 N LYS H 178 O GLN H 265 SHEET 1 O 7 ILE H 149 HIS H 151 0 SHEET 2 O 7 ASN H 154 PHE H 158 -1 O TYR H 156 N ILE H 149 SHEET 3 O 7 PHE H 261 LYS H 267 -1 O LYS H 266 N CYS H 155 SHEET 4 O 7 PHE H 202 ARG H 208 1 N TRP H 203 O PHE H 261 SHEET 5 O 7 THR H 242 GLN H 247 -1 O ILE H 246 N PHE H 202 SHEET 6 O 7 ALA H 250 ASN H 255 -1 O GLU H 254 N CYS H 243 SHEET 7 O 7 VAL H 230 GLY H 232 1 N ARG H 231 O ALA H 253 SSBOND 1 CYS A 144 CYS A 155 1555 1555 2.03 SSBOND 2 CYS A 172 CYS A 264 1555 1555 2.04 SSBOND 3 CYS A 243 CYS A 256 1555 1555 2.03 SSBOND 4 CYS B 144 CYS B 155 1555 1555 2.02 SSBOND 5 CYS B 172 CYS B 264 1555 1555 2.03 SSBOND 6 CYS B 243 CYS B 256 1555 1555 2.03 SSBOND 7 CYS C 144 CYS C 155 1555 1555 2.03 SSBOND 8 CYS C 172 CYS C 264 1555 1555 2.03 SSBOND 9 CYS C 243 CYS C 256 1555 1555 2.03 SSBOND 10 CYS D 144 CYS D 155 1555 1555 2.03 SSBOND 11 CYS D 172 CYS D 264 1555 1555 2.03 SSBOND 12 CYS D 243 CYS D 256 1555 1555 2.03 SSBOND 13 CYS E 144 CYS E 155 1555 1555 2.03 SSBOND 14 CYS E 172 CYS E 264 1555 1555 2.03 SSBOND 15 CYS E 243 CYS E 256 1555 1555 2.03 SSBOND 16 CYS F 144 CYS F 155 1555 1555 2.03 SSBOND 17 CYS F 172 CYS F 264 1555 1555 2.03 SSBOND 18 CYS F 243 CYS F 256 1555 1555 2.03 SSBOND 19 CYS G 144 CYS G 155 1555 1555 2.03 SSBOND 20 CYS G 172 CYS G 264 1555 1555 2.03 SSBOND 21 CYS G 243 CYS G 256 1555 1555 2.03 SSBOND 22 CYS H 144 CYS H 155 1555 1555 2.03 SSBOND 23 CYS H 172 CYS H 264 1555 1555 2.04 SSBOND 24 CYS H 243 CYS H 256 1555 1555 2.03 CRYST1 97.700 97.700 215.100 90.00 90.00 120.00 P 31 2 1 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010235 0.005909 0.000000 0.00000 SCALE2 0.000000 0.011819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004649 0.00000