data_1YQ8 # _entry.id 1YQ8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YQ8 pdb_00001yq8 10.2210/pdb1yq8/pdb RCSB RCSB031802 ? ? WWPDB D_1000031802 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YQ8 _pdbx_database_status.recvd_initial_deposition_date 2005-02-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YQ5 'PRD1 vertex protein P5' unspecified PDB 1YQ6 'PRD1 vertex protein P5' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Merckel, M.C.' 1 'Huiskonen, J.T.' 2 'Goldman, A.' 3 'Bamford, D.H.' 4 'Tuma, R.' 5 # _citation.id primary _citation.title 'The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 18 _citation.page_first 161 _citation.page_last 170 _citation.year 2005 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15837420 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2005.03.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Merckel, M.C.' 1 ? primary 'Huiskonen, J.T.' 2 ? primary 'Bamford, D.H.' 3 ? primary 'Goldman, A.' 4 ? primary 'Tuma, R.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Minor capsid protein' _entity.formula_weight 19385.850 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'deletion mutant' _entity.pdbx_fragment 'P5CdelG8, residues 142-340' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein P5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASVTDALSLMYSTSTGGPASIAANALTDFDLSG ALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLG VVSLDVLKFSLCNDGAALSNYIINITAAKIN ; _entity_poly.pdbx_seq_one_letter_code_can ;VVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASVTDALSLMYSTSTGGPASIAANALTDFDLSG ALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLG VVSLDVLKFSLCNDGAALSNYIINITAAKIN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 VAL n 1 3 VAL n 1 4 GLU n 1 5 ASP n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 SER n 1 10 PHE n 1 11 GLY n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 LEU n 1 16 ASP n 1 17 THR n 1 18 THR n 1 19 SER n 1 20 GLU n 1 21 PRO n 1 22 GLY n 1 23 LYS n 1 24 ILE n 1 25 LEU n 1 26 VAL n 1 27 LYS n 1 28 ARG n 1 29 ILE n 1 30 SER n 1 31 GLY n 1 32 GLY n 1 33 SER n 1 34 GLY n 1 35 ILE n 1 36 THR n 1 37 VAL n 1 38 THR n 1 39 ASP n 1 40 TYR n 1 41 GLY n 1 42 ASP n 1 43 GLN n 1 44 VAL n 1 45 GLU n 1 46 ILE n 1 47 GLU n 1 48 ALA n 1 49 SER n 1 50 VAL n 1 51 THR n 1 52 ASP n 1 53 ALA n 1 54 LEU n 1 55 SER n 1 56 LEU n 1 57 MET n 1 58 TYR n 1 59 SER n 1 60 THR n 1 61 SER n 1 62 THR n 1 63 GLY n 1 64 GLY n 1 65 PRO n 1 66 ALA n 1 67 SER n 1 68 ILE n 1 69 ALA n 1 70 ALA n 1 71 ASN n 1 72 ALA n 1 73 LEU n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 ASP n 1 78 LEU n 1 79 SER n 1 80 GLY n 1 81 ALA n 1 82 LEU n 1 83 THR n 1 84 VAL n 1 85 ASN n 1 86 SER n 1 87 VAL n 1 88 GLY n 1 89 THR n 1 90 GLY n 1 91 LEU n 1 92 THR n 1 93 LYS n 1 94 SER n 1 95 ALA n 1 96 ALA n 1 97 GLY n 1 98 ILE n 1 99 GLN n 1 100 LEU n 1 101 ALA n 1 102 ALA n 1 103 GLY n 1 104 LYS n 1 105 SER n 1 106 GLY n 1 107 LEU n 1 108 TYR n 1 109 GLN n 1 110 ILE n 1 111 THR n 1 112 MET n 1 113 THR n 1 114 VAL n 1 115 LYS n 1 116 ASN n 1 117 ASN n 1 118 THR n 1 119 VAL n 1 120 THR n 1 121 THR n 1 122 GLY n 1 123 ASN n 1 124 TYR n 1 125 LEU n 1 126 LEU n 1 127 ARG n 1 128 VAL n 1 129 LYS n 1 130 TYR n 1 131 GLY n 1 132 SER n 1 133 SER n 1 134 ASP n 1 135 PHE n 1 136 VAL n 1 137 VAL n 1 138 ALA n 1 139 CYS n 1 140 PRO n 1 141 ALA n 1 142 SER n 1 143 SER n 1 144 LEU n 1 145 THR n 1 146 ALA n 1 147 GLY n 1 148 GLY n 1 149 THR n 1 150 ILE n 1 151 SER n 1 152 LEU n 1 153 LEU n 1 154 ILE n 1 155 TYR n 1 156 CYS n 1 157 ASN n 1 158 VAL n 1 159 LEU n 1 160 GLY n 1 161 VAL n 1 162 VAL n 1 163 SER n 1 164 LEU n 1 165 ASP n 1 166 VAL n 1 167 LEU n 1 168 LYS n 1 169 PHE n 1 170 SER n 1 171 LEU n 1 172 CYS n 1 173 ASN n 1 174 ASP n 1 175 GLY n 1 176 ALA n 1 177 ALA n 1 178 LEU n 1 179 SER n 1 180 ASN n 1 181 TYR n 1 182 ILE n 1 183 ILE n 1 184 ASN n 1 185 ILE n 1 186 THR n 1 187 ALA n 1 188 ALA n 1 189 LYS n 1 190 ILE n 1 191 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Tectivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage PRD1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10658 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 142 142 VAL VAL A . n A 1 2 VAL 2 143 143 VAL VAL A . n A 1 3 VAL 3 144 144 VAL VAL A . n A 1 4 GLU 4 145 145 GLU GLU A . n A 1 5 ASP 5 146 146 ASP ALA A . n A 1 6 SER 6 147 147 SER ALA A . n A 1 7 GLY 7 148 148 GLY GLY A . n A 1 8 ALA 8 149 149 ALA ALA A . n A 1 9 SER 9 150 150 SER SER A . n A 1 10 PHE 10 151 151 PHE PHE A . n A 1 11 GLY 11 152 152 GLY GLY A . n A 1 12 GLU 12 153 153 GLU GLU A . n A 1 13 SER 13 154 154 SER SER A . n A 1 14 LEU 14 155 155 LEU LEU A . n A 1 15 LEU 15 156 156 LEU LEU A . n A 1 16 ASP 16 157 157 ASP ASP A . n A 1 17 THR 17 158 158 THR THR A . n A 1 18 THR 18 159 159 THR THR A . n A 1 19 SER 19 160 160 SER SER A . n A 1 20 GLU 20 161 161 GLU GLU A . n A 1 21 PRO 21 162 162 PRO PRO A . n A 1 22 GLY 22 163 163 GLY GLY A . n A 1 23 LYS 23 164 164 LYS LYS A . n A 1 24 ILE 24 165 165 ILE ILE A . n A 1 25 LEU 25 166 166 LEU LEU A . n A 1 26 VAL 26 167 167 VAL VAL A . n A 1 27 LYS 27 168 168 LYS LYS A . n A 1 28 ARG 28 169 169 ARG ARG A . n A 1 29 ILE 29 170 170 ILE ILE A . n A 1 30 SER 30 171 171 SER SER A . n A 1 31 GLY 31 172 172 GLY GLY A . n A 1 32 GLY 32 173 173 GLY GLY A . n A 1 33 SER 33 174 174 SER SER A . n A 1 34 GLY 34 175 175 GLY GLY A . n A 1 35 ILE 35 176 176 ILE ILE A . n A 1 36 THR 36 177 177 THR THR A . n A 1 37 VAL 37 178 178 VAL VAL A . n A 1 38 THR 38 179 179 THR THR A . n A 1 39 ASP 39 180 180 ASP ASP A . n A 1 40 TYR 40 181 181 TYR TYR A . n A 1 41 GLY 41 182 182 GLY GLY A . n A 1 42 ASP 42 183 183 ASP ASP A . n A 1 43 GLN 43 184 184 GLN GLN A . n A 1 44 VAL 44 185 185 VAL VAL A . n A 1 45 GLU 45 186 186 GLU GLU A . n A 1 46 ILE 46 187 187 ILE ILE A . n A 1 47 GLU 47 188 188 GLU GLU A . n A 1 48 ALA 48 189 189 ALA ALA A . n A 1 49 SER 49 190 190 SER SER A . n A 1 50 VAL 50 199 199 VAL VAL A . n A 1 51 THR 51 200 200 THR THR A . n A 1 52 ASP 52 201 201 ASP ASP A . n A 1 53 ALA 53 202 202 ALA ALA A . n A 1 54 LEU 54 203 203 LEU LEU A . n A 1 55 SER 55 204 204 SER SER A . n A 1 56 LEU 56 205 205 LEU LEU A . n A 1 57 MET 57 206 206 MET MET A . n A 1 58 TYR 58 207 207 TYR TYR A . n A 1 59 SER 59 208 208 SER SER A . n A 1 60 THR 60 209 209 THR THR A . n A 1 61 SER 61 210 210 SER SER A . n A 1 62 THR 62 211 211 THR THR A . n A 1 63 GLY 63 212 212 GLY GLY A . n A 1 64 GLY 64 213 213 GLY GLY A . n A 1 65 PRO 65 214 214 PRO PRO A . n A 1 66 ALA 66 215 215 ALA ALA A . n A 1 67 SER 67 216 216 SER SER A . n A 1 68 ILE 68 217 217 ILE ILE A . n A 1 69 ALA 69 218 218 ALA ALA A . n A 1 70 ALA 70 219 219 ALA ALA A . n A 1 71 ASN 71 220 220 ASN ASN A . n A 1 72 ALA 72 221 221 ALA ALA A . n A 1 73 LEU 73 222 222 LEU LEU A . n A 1 74 THR 74 223 223 THR THR A . n A 1 75 ASP 75 224 224 ASP ASP A . n A 1 76 PHE 76 225 225 PHE PHE A . n A 1 77 ASP 77 226 226 ASP ASP A . n A 1 78 LEU 78 227 227 LEU LEU A . n A 1 79 SER 79 228 228 SER SER A . n A 1 80 GLY 80 229 229 GLY GLY A . n A 1 81 ALA 81 230 230 ALA ALA A . n A 1 82 LEU 82 231 231 LEU LEU A . n A 1 83 THR 83 232 232 THR THR A . n A 1 84 VAL 84 233 233 VAL VAL A . n A 1 85 ASN 85 234 234 ASN ASN A . n A 1 86 SER 86 235 235 SER SER A . n A 1 87 VAL 87 236 236 VAL VAL A . n A 1 88 GLY 88 237 237 GLY GLY A . n A 1 89 THR 89 238 238 THR THR A . n A 1 90 GLY 90 239 239 GLY GLY A . n A 1 91 LEU 91 240 240 LEU LEU A . n A 1 92 THR 92 241 241 THR THR A . n A 1 93 LYS 93 242 242 LYS LYS A . n A 1 94 SER 94 243 243 SER SER A . n A 1 95 ALA 95 244 244 ALA ALA A . n A 1 96 ALA 96 245 245 ALA ALA A . n A 1 97 GLY 97 246 246 GLY GLY A . n A 1 98 ILE 98 247 247 ILE ILE A . n A 1 99 GLN 99 248 248 GLN GLN A . n A 1 100 LEU 100 249 249 LEU LEU A . n A 1 101 ALA 101 250 250 ALA ALA A . n A 1 102 ALA 102 251 251 ALA ALA A . n A 1 103 GLY 103 252 252 GLY GLY A . n A 1 104 LYS 104 253 253 LYS LYS A . n A 1 105 SER 105 254 254 SER SER A . n A 1 106 GLY 106 255 255 GLY GLY A . n A 1 107 LEU 107 256 256 LEU LEU A . n A 1 108 TYR 108 257 257 TYR TYR A . n A 1 109 GLN 109 258 258 GLN GLN A . n A 1 110 ILE 110 259 259 ILE ILE A . n A 1 111 THR 111 260 260 THR THR A . n A 1 112 MET 112 261 261 MET MET A . n A 1 113 THR 113 262 262 THR THR A . n A 1 114 VAL 114 263 263 VAL VAL A . n A 1 115 LYS 115 264 264 LYS LYS A . n A 1 116 ASN 116 265 265 ASN ASN A . n A 1 117 ASN 117 266 266 ASN ASN A . n A 1 118 THR 118 267 267 THR THR A . n A 1 119 VAL 119 268 268 VAL VAL A . n A 1 120 THR 120 269 269 THR THR A . n A 1 121 THR 121 270 270 THR THR A . n A 1 122 GLY 122 271 271 GLY GLY A . n A 1 123 ASN 123 272 272 ASN ASN A . n A 1 124 TYR 124 273 273 TYR TYR A . n A 1 125 LEU 125 274 274 LEU LEU A . n A 1 126 LEU 126 275 275 LEU LEU A . n A 1 127 ARG 127 276 276 ARG ARG A . n A 1 128 VAL 128 277 277 VAL VAL A . n A 1 129 LYS 129 278 278 LYS LYS A . n A 1 130 TYR 130 279 279 TYR TYR A . n A 1 131 GLY 131 280 280 GLY GLY A . n A 1 132 SER 132 281 281 SER SER A . n A 1 133 SER 133 282 282 SER SER A . n A 1 134 ASP 134 283 283 ASP ASP A . n A 1 135 PHE 135 284 284 PHE PHE A . n A 1 136 VAL 136 285 285 VAL VAL A . n A 1 137 VAL 137 286 286 VAL VAL A . n A 1 138 ALA 138 287 287 ALA ALA A . n A 1 139 CYS 139 288 288 CYS CYS A . n A 1 140 PRO 140 289 289 PRO PRO A . n A 1 141 ALA 141 290 290 ALA ALA A . n A 1 142 SER 142 291 291 SER SER A . n A 1 143 SER 143 292 292 SER SER A . n A 1 144 LEU 144 293 293 LEU LEU A . n A 1 145 THR 145 294 294 THR THR A . n A 1 146 ALA 146 295 295 ALA ALA A . n A 1 147 GLY 147 296 296 GLY GLY A . n A 1 148 GLY 148 297 297 GLY GLY A . n A 1 149 THR 149 298 298 THR THR A . n A 1 150 ILE 150 299 299 ILE ILE A . n A 1 151 SER 151 300 300 SER SER A . n A 1 152 LEU 152 301 301 LEU LEU A . n A 1 153 LEU 153 302 302 LEU LEU A . n A 1 154 ILE 154 303 303 ILE ILE A . n A 1 155 TYR 155 304 304 TYR TYR A . n A 1 156 CYS 156 305 305 CYS CYS A . n A 1 157 ASN 157 306 306 ASN ASN A . n A 1 158 VAL 158 307 307 VAL VAL A . n A 1 159 LEU 159 308 308 LEU LEU A . n A 1 160 GLY 160 309 309 GLY GLY A . n A 1 161 VAL 161 310 310 VAL VAL A . n A 1 162 VAL 162 311 311 VAL VAL A . n A 1 163 SER 163 312 312 SER SER A . n A 1 164 LEU 164 313 313 LEU LEU A . n A 1 165 ASP 165 314 314 ASP ASP A . n A 1 166 VAL 166 315 315 VAL VAL A . n A 1 167 LEU 167 316 316 LEU LEU A . n A 1 168 LYS 168 317 317 LYS LYS A . n A 1 169 PHE 169 318 318 PHE PHE A . n A 1 170 SER 170 319 319 SER SER A . n A 1 171 LEU 171 320 320 LEU LEU A . n A 1 172 CYS 172 321 321 CYS CYS A . n A 1 173 ASN 173 322 322 ASN ASN A . n A 1 174 ASP 174 323 323 ASP ASP A . n A 1 175 GLY 175 324 324 GLY GLY A . n A 1 176 ALA 176 325 325 ALA ALA A . n A 1 177 ALA 177 326 326 ALA ALA A . n A 1 178 LEU 178 327 327 LEU LEU A . n A 1 179 SER 179 328 328 SER SER A . n A 1 180 ASN 180 329 329 ASN ASN A . n A 1 181 TYR 181 330 330 TYR TYR A . n A 1 182 ILE 182 331 331 ILE ILE A . n A 1 183 ILE 183 332 332 ILE ILE A . n A 1 184 ASN 184 333 333 ASN ASN A . n A 1 185 ILE 185 334 334 ILE ILE A . n A 1 186 THR 186 335 335 THR THR A . n A 1 187 ALA 187 336 336 ALA ALA A . n A 1 188 ALA 188 337 337 ALA ALA A . n A 1 189 LYS 189 338 338 LYS LYS A . n A 1 190 ILE 190 339 339 ILE ILE A . n A 1 191 ASN 191 340 340 ASN ASN A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 146 ? CG ? A ASP 5 CG 2 1 Y 1 A ASP 146 ? OD1 ? A ASP 5 OD1 3 1 Y 1 A ASP 146 ? OD2 ? A ASP 5 OD2 4 1 Y 1 A SER 147 ? OG ? A SER 6 OG # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Crystal 'data collection' 'Clear 1.3' ? 1 Crystal 'data reduction' 'Clear 1.3' ? 2 CNS refinement . ? 3 CrystalClear 'data reduction' 'V. 1.3 (MSC/RIGAKU)' ? 4 CrystalClear 'data scaling' 'V. 1.3 (MSC/RIGAKU)' ? 5 CNS phasing . ? 6 # _cell.entry_id 1YQ8 _cell.length_a 52.240 _cell.length_b 52.240 _cell.length_c 234.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQ8 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YQ8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 58.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'Tris HCL, MgCl2, PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-10-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Confocal mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1YQ8 _reflns.observed_criterion_sigma_F -3.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 44.4 _reflns.number_all 7251 _reflns.number_obs 7238 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.83 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YQ8 _refine.ls_d_res_high 2.6 _refine.ls_d_res_low 44.4 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7260 _refine.ls_number_reflns_obs 7238 _refine.ls_number_reflns_R_free 770 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.261 _refine.ls_R_factor_R_work 0.261 _refine.ls_R_factor_R_free 0.3 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1354 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1354 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 44.4 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1YQ8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YQ8 _struct.title 'PRD1 vertex protein P5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YQ8 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'beta-spiral beta-jelly-roll, Viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code COA5_BPPRD _struct_ref.pdbx_db_accession P22536 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VVVEDSGASFGESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANA LTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLRVKYGSSDFVVACPASSLTAGGTISL LIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN ; _struct_ref.pdbx_align_begin 141 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YQ8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22536 _struct_ref_seq.db_align_beg 141 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 339 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 142 _struct_ref_seq.pdbx_auth_seq_align_end 340 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YQ8 ? A ? ? UNP P22536 GLY 190 deletion ? 1 1 1YQ8 ? A ? ? UNP P22536 GLY 191 deletion ? 2 1 1YQ8 ? A ? ? UNP P22536 GLY 192 deletion ? 3 1 1YQ8 ? A ? ? UNP P22536 GLY 193 deletion ? 4 1 1YQ8 ? A ? ? UNP P22536 GLY 194 deletion ? 5 1 1YQ8 ? A ? ? UNP P22536 GLY 195 deletion ? 6 1 1YQ8 ? A ? ? UNP P22536 GLY 196 deletion ? 7 1 1YQ8 ? A ? ? UNP P22536 GLY 197 deletion ? 8 1 1YQ8 VAL A 162 ? UNP P22536 PRO 310 'SEE REMARK 999' 311 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11990 ? 1 MORE -79 ? 1 'SSA (A^2)' 19770 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 26.1200000000 0.8660254038 -0.5000000000 0.0000000000 45.2411670937 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -26.1200000000 -0.8660254038 -0.5000000000 0.0000000000 45.2411670937 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The biological unit is a trimer generated from the chain A in the asymmetric unit by the operations: -Y,X-Y,Z and Y-X,-X,Z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 35 ? TYR A 40 ? ILE A 176 TYR A 181 A 2 GLN A 43 ? ALA A 48 ? GLN A 184 ALA A 189 B 1 LEU A 82 ? VAL A 87 ? LEU A 231 VAL A 236 B 2 ASP A 52 ? SER A 59 ? ASP A 201 SER A 208 B 3 ILE A 182 ? LYS A 189 ? ILE A 331 LYS A 338 B 4 GLY A 106 ? LYS A 115 ? GLY A 255 LYS A 264 B 5 GLY A 147 ? CYS A 156 ? GLY A 296 CYS A 305 C 1 LEU A 91 ? SER A 94 ? LEU A 240 SER A 243 C 2 GLY A 97 ? LEU A 100 ? GLY A 246 LEU A 249 C 3 VAL A 166 ? ASN A 173 ? VAL A 315 ASN A 322 C 4 ASN A 123 ? TYR A 130 ? ASN A 272 TYR A 279 C 5 SER A 133 ? PRO A 140 ? SER A 282 PRO A 289 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 36 ? N THR A 177 O GLU A 47 ? O GLU A 188 B 1 2 O ASN A 85 ? O ASN A 234 N SER A 55 ? N SER A 204 B 2 3 N TYR A 58 ? N TYR A 207 O ILE A 183 ? O ILE A 332 B 3 4 O ALA A 188 ? O ALA A 337 N GLN A 109 ? N GLN A 258 B 4 5 N ILE A 110 ? N ILE A 259 O LEU A 152 ? O LEU A 301 C 1 2 N SER A 94 ? N SER A 243 O GLY A 97 ? O GLY A 246 C 2 3 N ILE A 98 ? N ILE A 247 O LEU A 167 ? O LEU A 316 C 3 4 O CYS A 172 ? O CYS A 321 N LEU A 125 ? N LEU A 274 C 4 5 N TYR A 124 ? N TYR A 273 O CYS A 139 ? O CYS A 288 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 144 ? ? 86.81 148.81 2 1 SER A 150 ? ? 64.30 -178.44 3 1 GLU A 153 ? ? 58.69 -28.15 4 1 SER A 154 ? ? 85.63 -60.88 5 1 LEU A 155 ? ? -97.82 31.56 6 1 LEU A 156 ? ? -67.73 -165.52 7 1 SER A 160 ? ? 144.56 -7.81 8 1 GLU A 161 ? ? -163.07 66.87 9 1 PRO A 162 ? ? -40.85 161.81 10 1 VAL A 167 ? ? 74.22 86.90 11 1 THR A 209 ? ? -74.76 34.20 12 1 SER A 210 ? ? -158.17 12.15 13 1 THR A 211 ? ? -150.65 68.54 14 1 ASN A 220 ? ? 23.34 74.29 15 1 ALA A 221 ? ? 174.13 145.12 16 1 ALA A 230 ? ? -52.78 -176.10 17 1 THR A 267 ? ? -59.44 -9.29 18 1 TYR A 279 ? ? -162.43 103.81 19 1 VAL A 286 ? ? -175.69 133.77 20 1 ALA A 290 ? ? -79.62 -168.28 21 1 SER A 291 ? ? 151.62 159.79 22 1 VAL A 311 ? ? -31.86 -37.03 23 1 ASP A 314 ? ? -91.89 55.90 24 1 SER A 319 ? ? -173.02 140.63 25 1 CYS A 321 ? ? -178.55 -177.05 26 1 ASN A 329 ? ? -149.84 29.58 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 MET N N N N 206 MET CA C N S 207 MET C C N N 208 MET O O N N 209 MET CB C N N 210 MET CG C N N 211 MET SD S N N 212 MET CE C N N 213 MET OXT O N N 214 MET H H N N 215 MET H2 H N N 216 MET HA H N N 217 MET HB2 H N N 218 MET HB3 H N N 219 MET HG2 H N N 220 MET HG3 H N N 221 MET HE1 H N N 222 MET HE2 H N N 223 MET HE3 H N N 224 MET HXT H N N 225 PHE N N N N 226 PHE CA C N S 227 PHE C C N N 228 PHE O O N N 229 PHE CB C N N 230 PHE CG C Y N 231 PHE CD1 C Y N 232 PHE CD2 C Y N 233 PHE CE1 C Y N 234 PHE CE2 C Y N 235 PHE CZ C Y N 236 PHE OXT O N N 237 PHE H H N N 238 PHE H2 H N N 239 PHE HA H N N 240 PHE HB2 H N N 241 PHE HB3 H N N 242 PHE HD1 H N N 243 PHE HD2 H N N 244 PHE HE1 H N N 245 PHE HE2 H N N 246 PHE HZ H N N 247 PHE HXT H N N 248 PRO N N N N 249 PRO CA C N S 250 PRO C C N N 251 PRO O O N N 252 PRO CB C N N 253 PRO CG C N N 254 PRO CD C N N 255 PRO OXT O N N 256 PRO H H N N 257 PRO HA H N N 258 PRO HB2 H N N 259 PRO HB3 H N N 260 PRO HG2 H N N 261 PRO HG3 H N N 262 PRO HD2 H N N 263 PRO HD3 H N N 264 PRO HXT H N N 265 SER N N N N 266 SER CA C N S 267 SER C C N N 268 SER O O N N 269 SER CB C N N 270 SER OG O N N 271 SER OXT O N N 272 SER H H N N 273 SER H2 H N N 274 SER HA H N N 275 SER HB2 H N N 276 SER HB3 H N N 277 SER HG H N N 278 SER HXT H N N 279 THR N N N N 280 THR CA C N S 281 THR C C N N 282 THR O O N N 283 THR CB C N R 284 THR OG1 O N N 285 THR CG2 C N N 286 THR OXT O N N 287 THR H H N N 288 THR H2 H N N 289 THR HA H N N 290 THR HB H N N 291 THR HG1 H N N 292 THR HG21 H N N 293 THR HG22 H N N 294 THR HG23 H N N 295 THR HXT H N N 296 TYR N N N N 297 TYR CA C N S 298 TYR C C N N 299 TYR O O N N 300 TYR CB C N N 301 TYR CG C Y N 302 TYR CD1 C Y N 303 TYR CD2 C Y N 304 TYR CE1 C Y N 305 TYR CE2 C Y N 306 TYR CZ C Y N 307 TYR OH O N N 308 TYR OXT O N N 309 TYR H H N N 310 TYR H2 H N N 311 TYR HA H N N 312 TYR HB2 H N N 313 TYR HB3 H N N 314 TYR HD1 H N N 315 TYR HD2 H N N 316 TYR HE1 H N N 317 TYR HE2 H N N 318 TYR HH H N N 319 TYR HXT H N N 320 VAL N N N N 321 VAL CA C N S 322 VAL C C N N 323 VAL O O N N 324 VAL CB C N N 325 VAL CG1 C N N 326 VAL CG2 C N N 327 VAL OXT O N N 328 VAL H H N N 329 VAL H2 H N N 330 VAL HA H N N 331 VAL HB H N N 332 VAL HG11 H N N 333 VAL HG12 H N N 334 VAL HG13 H N N 335 VAL HG21 H N N 336 VAL HG22 H N N 337 VAL HG23 H N N 338 VAL HXT H N N 339 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 MET N CA sing N N 195 MET N H sing N N 196 MET N H2 sing N N 197 MET CA C sing N N 198 MET CA CB sing N N 199 MET CA HA sing N N 200 MET C O doub N N 201 MET C OXT sing N N 202 MET CB CG sing N N 203 MET CB HB2 sing N N 204 MET CB HB3 sing N N 205 MET CG SD sing N N 206 MET CG HG2 sing N N 207 MET CG HG3 sing N N 208 MET SD CE sing N N 209 MET CE HE1 sing N N 210 MET CE HE2 sing N N 211 MET CE HE3 sing N N 212 MET OXT HXT sing N N 213 PHE N CA sing N N 214 PHE N H sing N N 215 PHE N H2 sing N N 216 PHE CA C sing N N 217 PHE CA CB sing N N 218 PHE CA HA sing N N 219 PHE C O doub N N 220 PHE C OXT sing N N 221 PHE CB CG sing N N 222 PHE CB HB2 sing N N 223 PHE CB HB3 sing N N 224 PHE CG CD1 doub Y N 225 PHE CG CD2 sing Y N 226 PHE CD1 CE1 sing Y N 227 PHE CD1 HD1 sing N N 228 PHE CD2 CE2 doub Y N 229 PHE CD2 HD2 sing N N 230 PHE CE1 CZ doub Y N 231 PHE CE1 HE1 sing N N 232 PHE CE2 CZ sing Y N 233 PHE CE2 HE2 sing N N 234 PHE CZ HZ sing N N 235 PHE OXT HXT sing N N 236 PRO N CA sing N N 237 PRO N CD sing N N 238 PRO N H sing N N 239 PRO CA C sing N N 240 PRO CA CB sing N N 241 PRO CA HA sing N N 242 PRO C O doub N N 243 PRO C OXT sing N N 244 PRO CB CG sing N N 245 PRO CB HB2 sing N N 246 PRO CB HB3 sing N N 247 PRO CG CD sing N N 248 PRO CG HG2 sing N N 249 PRO CG HG3 sing N N 250 PRO CD HD2 sing N N 251 PRO CD HD3 sing N N 252 PRO OXT HXT sing N N 253 SER N CA sing N N 254 SER N H sing N N 255 SER N H2 sing N N 256 SER CA C sing N N 257 SER CA CB sing N N 258 SER CA HA sing N N 259 SER C O doub N N 260 SER C OXT sing N N 261 SER CB OG sing N N 262 SER CB HB2 sing N N 263 SER CB HB3 sing N N 264 SER OG HG sing N N 265 SER OXT HXT sing N N 266 THR N CA sing N N 267 THR N H sing N N 268 THR N H2 sing N N 269 THR CA C sing N N 270 THR CA CB sing N N 271 THR CA HA sing N N 272 THR C O doub N N 273 THR C OXT sing N N 274 THR CB OG1 sing N N 275 THR CB CG2 sing N N 276 THR CB HB sing N N 277 THR OG1 HG1 sing N N 278 THR CG2 HG21 sing N N 279 THR CG2 HG22 sing N N 280 THR CG2 HG23 sing N N 281 THR OXT HXT sing N N 282 TYR N CA sing N N 283 TYR N H sing N N 284 TYR N H2 sing N N 285 TYR CA C sing N N 286 TYR CA CB sing N N 287 TYR CA HA sing N N 288 TYR C O doub N N 289 TYR C OXT sing N N 290 TYR CB CG sing N N 291 TYR CB HB2 sing N N 292 TYR CB HB3 sing N N 293 TYR CG CD1 doub Y N 294 TYR CG CD2 sing Y N 295 TYR CD1 CE1 sing Y N 296 TYR CD1 HD1 sing N N 297 TYR CD2 CE2 doub Y N 298 TYR CD2 HD2 sing N N 299 TYR CE1 CZ doub Y N 300 TYR CE1 HE1 sing N N 301 TYR CE2 CZ sing Y N 302 TYR CE2 HE2 sing N N 303 TYR CZ OH sing N N 304 TYR OH HH sing N N 305 TYR OXT HXT sing N N 306 VAL N CA sing N N 307 VAL N H sing N N 308 VAL N H2 sing N N 309 VAL CA C sing N N 310 VAL CA CB sing N N 311 VAL CA HA sing N N 312 VAL C O doub N N 313 VAL C OXT sing N N 314 VAL CB CG1 sing N N 315 VAL CB CG2 sing N N 316 VAL CB HB sing N N 317 VAL CG1 HG11 sing N N 318 VAL CG1 HG12 sing N N 319 VAL CG1 HG13 sing N N 320 VAL CG2 HG21 sing N N 321 VAL CG2 HG22 sing N N 322 VAL CG2 HG23 sing N N 323 VAL OXT HXT sing N N 324 # _atom_sites.entry_id 1YQ8 _atom_sites.fract_transf_matrix[1][1] 0.019142 _atom_sites.fract_transf_matrix[1][2] 0.011052 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022104 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004260 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_