HEADER OXIDOREDUCTASE 01-FEB-05 1YQD TITLE SINAPYL ALCOHOL DEHYDROGENASE COMPLEXED WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINAPYL ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.195; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TREMULOIDES; SOURCE 3 ORGANISM_COMMON: QUAKING ASPEN; SOURCE 4 ORGANISM_TAXID: 3693; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS LIGNIN, MONOLIGNOL, OXIDOREDUCTASE, ZINC-DEPENDENT, PLANT DEFENSE, KEYWDS 2 BIOSYNTHESIS, SUBSTRATE INHIBITION, MEDIUM-CHAIN KEYWDS 3 DEHYDROGENSE/REDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.K.BOMATI,J.P.NOEL REVDAT 6 03-APR-24 1YQD 1 REMARK REVDAT 5 14-FEB-24 1YQD 1 REMARK REVDAT 4 20-OCT-21 1YQD 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1YQD 1 VERSN REVDAT 2 24-FEB-09 1YQD 1 VERSN REVDAT 1 12-JUL-05 1YQD 0 JRNL AUTH E.K.BOMATI,J.P.NOEL JRNL TITL STRUCTURAL AND KINETIC BASIS FOR SUBSTRATE SELECTIVITY IN JRNL TITL 2 POPULUS TREMULOIDES SINAPYL ALCOHOL DEHYDROGENASE. JRNL REF PLANT CELL V. 17 1598 2005 JRNL REFN ISSN 1040-4651 JRNL PMID 15829607 JRNL DOI 10.1105/TPC.104.029983 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 225617.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 83806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4225 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11949 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 619 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 464 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.740 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 33.65 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : N.PAR REMARK 3 PARAMETER FILE 5 : GOL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : N.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : DTT.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: UNREFINED STRUCTURE OF THE SAME PROTEIN SOLVED BY REMARK 200 MAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL MONOMETHYL ETHER REMARK 280 5000, POLYETHYLENE GLYCOL 400, MOPSO, DTT, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.23850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.89800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.23850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.89800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASSYMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 4.07 -67.82 REMARK 500 PHE A 30 -153.78 -149.91 REMARK 500 HIS A 72 33.62 -141.05 REMARK 500 SER A 105 22.40 -141.72 REMARK 500 ASN A 155 31.80 -95.26 REMARK 500 CYS A 166 -63.06 -126.33 REMARK 500 ILE A 303 -125.79 30.66 REMARK 500 PHE B 30 -154.08 -146.80 REMARK 500 HIS B 72 34.41 -142.53 REMARK 500 SER B 105 20.10 -144.85 REMARK 500 CYS B 166 -63.57 -128.13 REMARK 500 ILE B 303 -125.66 29.88 REMARK 500 ASP B 331 0.17 -69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 50 SG REMARK 620 2 HIS A 72 NE2 114.3 REMARK 620 3 CYS A 166 SG 121.9 108.5 REMARK 620 4 HOH A2046 O 111.1 99.6 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 106 SG 104.7 REMARK 620 3 CYS A 109 SG 118.9 108.9 REMARK 620 4 CYS A 117 SG 105.3 116.9 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 50 SG REMARK 620 2 HIS B 72 NE2 111.7 REMARK 620 3 CYS B 166 SG 122.7 108.8 REMARK 620 4 HOH B4083 O 110.8 102.2 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B3000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 CYS B 106 SG 104.9 REMARK 620 3 CYS B 109 SG 120.0 108.5 REMARK 620 4 CYS B 117 SG 104.2 117.7 102.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 900 DBREF 1YQD A 1 362 UNP Q94G59 Q94G59_POPTM 1 362 DBREF 1YQD B 1 362 UNP Q94G59 Q94G59_POPTM 1 362 SEQADV 1YQD GLY A -3 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD SER A -2 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD HIS A -1 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD GLY A 0 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD ASN A 140 UNP Q94G59 ASP 140 ENGINEERED MUTATION SEQADV 1YQD GLY B -3 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD SER B -2 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD HIS B -1 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD GLY B 0 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQD ASN B 140 UNP Q94G59 ASP 140 ENGINEERED MUTATION SEQRES 1 A 366 GLY SER HIS GLY MET SER LYS SER PRO GLU GLU GLU HIS SEQRES 2 A 366 PRO VAL LYS ALA PHE GLY TRP ALA ALA ARG ASP GLN SER SEQRES 3 A 366 GLY HIS LEU SER PRO PHE ASN PHE SER ARG ARG ALA THR SEQRES 4 A 366 GLY GLU GLU ASP VAL ARG PHE LYS VAL LEU TYR CYS GLY SEQRES 5 A 366 VAL CYS HIS SER ASP LEU HIS SER ILE LYS ASN ASP TRP SEQRES 6 A 366 GLY PHE SER MET TYR PRO LEU VAL PRO GLY HIS GLU ILE SEQRES 7 A 366 VAL GLY GLU VAL THR GLU VAL GLY SER LYS VAL LYS LYS SEQRES 8 A 366 VAL ASN VAL GLY ASP LYS VAL GLY VAL GLY CYS LEU VAL SEQRES 9 A 366 GLY ALA CYS HIS SER CYS GLU SER CYS ALA ASN ASP LEU SEQRES 10 A 366 GLU ASN TYR CYS PRO LYS MET ILE LEU THR TYR ALA SER SEQRES 11 A 366 ILE TYR HIS ASP GLY THR ILE THR TYR GLY GLY TYR SER SEQRES 12 A 366 ASN HIS MET VAL ALA ASN GLU ARG TYR ILE ILE ARG PHE SEQRES 13 A 366 PRO ASP ASN MET PRO LEU ASP GLY GLY ALA PRO LEU LEU SEQRES 14 A 366 CYS ALA GLY ILE THR VAL TYR SER PRO LEU LYS TYR PHE SEQRES 15 A 366 GLY LEU ASP GLU PRO GLY LYS HIS ILE GLY ILE VAL GLY SEQRES 16 A 366 LEU GLY GLY LEU GLY HIS VAL ALA VAL LYS PHE ALA LYS SEQRES 17 A 366 ALA PHE GLY SER LYS VAL THR VAL ILE SER THR SER PRO SEQRES 18 A 366 SER LYS LYS GLU GLU ALA LEU LYS ASN PHE GLY ALA ASP SEQRES 19 A 366 SER PHE LEU VAL SER ARG ASP GLN GLU GLN MET GLN ALA SEQRES 20 A 366 ALA ALA GLY THR LEU ASP GLY ILE ILE ASP THR VAL SER SEQRES 21 A 366 ALA VAL HIS PRO LEU LEU PRO LEU PHE GLY LEU LEU LYS SEQRES 22 A 366 SER HIS GLY LYS LEU ILE LEU VAL GLY ALA PRO GLU LYS SEQRES 23 A 366 PRO LEU GLU LEU PRO ALA PHE SER LEU ILE ALA GLY ARG SEQRES 24 A 366 LYS ILE VAL ALA GLY SER GLY ILE GLY GLY MET LYS GLU SEQRES 25 A 366 THR GLN GLU MET ILE ASP PHE ALA ALA LYS HIS ASN ILE SEQRES 26 A 366 THR ALA ASP ILE GLU VAL ILE SER THR ASP TYR LEU ASN SEQRES 27 A 366 THR ALA MET GLU ARG LEU ALA LYS ASN ASP VAL ARG TYR SEQRES 28 A 366 ARG PHE VAL ILE ASP VAL GLY ASN THR LEU ALA ALA THR SEQRES 29 A 366 LYS PRO SEQRES 1 B 366 GLY SER HIS GLY MET SER LYS SER PRO GLU GLU GLU HIS SEQRES 2 B 366 PRO VAL LYS ALA PHE GLY TRP ALA ALA ARG ASP GLN SER SEQRES 3 B 366 GLY HIS LEU SER PRO PHE ASN PHE SER ARG ARG ALA THR SEQRES 4 B 366 GLY GLU GLU ASP VAL ARG PHE LYS VAL LEU TYR CYS GLY SEQRES 5 B 366 VAL CYS HIS SER ASP LEU HIS SER ILE LYS ASN ASP TRP SEQRES 6 B 366 GLY PHE SER MET TYR PRO LEU VAL PRO GLY HIS GLU ILE SEQRES 7 B 366 VAL GLY GLU VAL THR GLU VAL GLY SER LYS VAL LYS LYS SEQRES 8 B 366 VAL ASN VAL GLY ASP LYS VAL GLY VAL GLY CYS LEU VAL SEQRES 9 B 366 GLY ALA CYS HIS SER CYS GLU SER CYS ALA ASN ASP LEU SEQRES 10 B 366 GLU ASN TYR CYS PRO LYS MET ILE LEU THR TYR ALA SER SEQRES 11 B 366 ILE TYR HIS ASP GLY THR ILE THR TYR GLY GLY TYR SER SEQRES 12 B 366 ASN HIS MET VAL ALA ASN GLU ARG TYR ILE ILE ARG PHE SEQRES 13 B 366 PRO ASP ASN MET PRO LEU ASP GLY GLY ALA PRO LEU LEU SEQRES 14 B 366 CYS ALA GLY ILE THR VAL TYR SER PRO LEU LYS TYR PHE SEQRES 15 B 366 GLY LEU ASP GLU PRO GLY LYS HIS ILE GLY ILE VAL GLY SEQRES 16 B 366 LEU GLY GLY LEU GLY HIS VAL ALA VAL LYS PHE ALA LYS SEQRES 17 B 366 ALA PHE GLY SER LYS VAL THR VAL ILE SER THR SER PRO SEQRES 18 B 366 SER LYS LYS GLU GLU ALA LEU LYS ASN PHE GLY ALA ASP SEQRES 19 B 366 SER PHE LEU VAL SER ARG ASP GLN GLU GLN MET GLN ALA SEQRES 20 B 366 ALA ALA GLY THR LEU ASP GLY ILE ILE ASP THR VAL SER SEQRES 21 B 366 ALA VAL HIS PRO LEU LEU PRO LEU PHE GLY LEU LEU LYS SEQRES 22 B 366 SER HIS GLY LYS LEU ILE LEU VAL GLY ALA PRO GLU LYS SEQRES 23 B 366 PRO LEU GLU LEU PRO ALA PHE SER LEU ILE ALA GLY ARG SEQRES 24 B 366 LYS ILE VAL ALA GLY SER GLY ILE GLY GLY MET LYS GLU SEQRES 25 B 366 THR GLN GLU MET ILE ASP PHE ALA ALA LYS HIS ASN ILE SEQRES 26 B 366 THR ALA ASP ILE GLU VAL ILE SER THR ASP TYR LEU ASN SEQRES 27 B 366 THR ALA MET GLU ARG LEU ALA LYS ASN ASP VAL ARG TYR SEQRES 28 B 366 ARG PHE VAL ILE ASP VAL GLY ASN THR LEU ALA ALA THR SEQRES 29 B 366 LYS PRO HET ZN A1000 1 HET ZN A2000 1 HET NAP A 500 48 HET DTT A 700 8 HET ZN B3000 1 HET ZN B4000 1 HET NAP B 600 48 HET DTT B 800 8 HET GOL B 900 6 HETNAM ZN ZINC ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN DTT 1,4-DITHIOTHREITOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 6 DTT 2(C4 H10 O2 S2) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *464(H2 O) HELIX 1 1 SER A 4 HIS A 9 1 6 HELIX 2 2 CYS A 50 ASN A 59 1 10 HELIX 3 3 CYS A 106 ASN A 111 1 6 HELIX 4 4 LEU A 113 CYS A 117 5 5 HELIX 5 5 ARG A 147 ILE A 149 5 3 HELIX 6 6 GLY A 161 LEU A 165 5 5 HELIX 7 7 CYS A 166 PHE A 178 1 13 HELIX 8 8 GLY A 193 PHE A 206 1 14 HELIX 9 9 SER A 216 SER A 218 5 3 HELIX 10 10 LYS A 219 ASN A 226 1 8 HELIX 11 11 ASP A 237 ALA A 244 1 8 HELIX 12 12 LEU A 261 LEU A 267 1 7 HELIX 13 13 PRO A 287 ALA A 293 1 7 HELIX 14 14 GLY A 305 HIS A 319 1 15 HELIX 15 15 SER A 329 ASP A 331 5 3 HELIX 16 16 TYR A 332 LYS A 342 1 11 HELIX 17 17 ASP A 352 LEU A 357 1 6 HELIX 18 18 ALA A 358 LYS A 361 5 4 HELIX 19 19 SER B 4 HIS B 9 1 6 HELIX 20 20 CYS B 50 LYS B 58 1 9 HELIX 21 21 CYS B 106 ASN B 111 1 6 HELIX 22 22 LEU B 113 CYS B 117 5 5 HELIX 23 23 ARG B 147 ILE B 149 5 3 HELIX 24 24 PRO B 157 ALA B 162 1 6 HELIX 25 25 PRO B 163 LEU B 165 5 3 HELIX 26 26 CYS B 166 PHE B 178 1 13 HELIX 27 27 GLY B 193 PHE B 206 1 14 HELIX 28 28 SER B 216 SER B 218 5 3 HELIX 29 29 LYS B 219 ASN B 226 1 8 HELIX 30 30 ASP B 237 ALA B 244 1 8 HELIX 31 31 LEU B 261 LEU B 267 1 7 HELIX 32 32 PRO B 287 ALA B 293 1 7 HELIX 33 33 GLY B 305 HIS B 319 1 15 HELIX 34 34 SER B 329 ASP B 331 5 3 HELIX 35 35 TYR B 332 LYS B 342 1 11 HELIX 36 36 ASP B 352 LEU B 357 1 6 HELIX 37 37 ALA B 358 LYS B 361 5 4 SHEET 1 A 2 VAL A 11 ALA A 18 0 SHEET 2 A 2 LEU A 25 ARG A 32 -1 O PHE A 30 N ALA A 13 SHEET 1 B 5 HIS A 141 ASN A 145 0 SHEET 2 B 5 ASP A 39 VAL A 49 -1 N PHE A 42 O MET A 142 SHEET 3 B 5 ILE A 74 VAL A 81 -1 O GLU A 80 N ARG A 41 SHEET 4 B 5 LYS A 93 VAL A 96 -1 O VAL A 94 N GLY A 76 SHEET 5 B 5 ILE A 150 ARG A 151 -1 O ILE A 150 N GLY A 95 SHEET 1 C 4 HIS A 141 ASN A 145 0 SHEET 2 C 4 ASP A 39 VAL A 49 -1 N PHE A 42 O MET A 142 SHEET 3 C 4 ARG A 348 ILE A 351 -1 O ILE A 351 N CYS A 47 SHEET 4 C 4 ILE A 325 ILE A 328 1 N ILE A 328 O VAL A 350 SHEET 1 D 2 LEU A 99 GLY A 101 0 SHEET 2 D 2 ILE A 121 LEU A 122 -1 O ILE A 121 N GLY A 101 SHEET 1 E12 SER A 231 VAL A 234 0 SHEET 2 E12 LYS A 209 SER A 214 1 N VAL A 212 O LEU A 233 SHEET 3 E12 HIS A 186 VAL A 190 1 N ILE A 189 O ILE A 213 SHEET 4 E12 LEU A 248 ASP A 253 1 O ASP A 249 N HIS A 186 SHEET 5 E12 LEU A 268 LEU A 276 1 O ILE A 275 N ILE A 251 SHEET 6 E12 ILE A 297 GLY A 300 1 O ALA A 299 N LEU A 276 SHEET 7 E12 ILE B 297 GLY B 300 -1 O VAL B 298 N VAL A 298 SHEET 8 E12 LEU B 268 LEU B 276 1 N LEU B 276 O ALA B 299 SHEET 9 E12 LEU B 248 ASP B 253 1 N ILE B 251 O ILE B 275 SHEET 10 E12 HIS B 186 VAL B 190 1 N GLY B 188 O ILE B 252 SHEET 11 E12 LYS B 209 SER B 214 1 O THR B 211 N ILE B 187 SHEET 12 E12 SER B 231 VAL B 234 1 O LEU B 233 N VAL B 212 SHEET 1 F 2 LEU A 284 LEU A 286 0 SHEET 2 F 2 LEU B 284 LEU B 286 -1 O LEU B 286 N LEU A 284 SHEET 1 G 2 VAL B 11 ALA B 18 0 SHEET 2 G 2 LEU B 25 ARG B 32 -1 O ARG B 32 N VAL B 11 SHEET 1 H 5 HIS B 141 ASN B 145 0 SHEET 2 H 5 ASP B 39 VAL B 49 -1 N PHE B 42 O MET B 142 SHEET 3 H 5 ILE B 74 VAL B 81 -1 O GLU B 80 N ARG B 41 SHEET 4 H 5 LYS B 93 VAL B 96 -1 O VAL B 94 N GLY B 76 SHEET 5 H 5 ILE B 150 ARG B 151 -1 O ILE B 150 N GLY B 95 SHEET 1 I 4 HIS B 141 ASN B 145 0 SHEET 2 I 4 ASP B 39 VAL B 49 -1 N PHE B 42 O MET B 142 SHEET 3 I 4 ARG B 348 ILE B 351 -1 O ILE B 351 N CYS B 47 SHEET 4 I 4 ILE B 325 ILE B 328 1 N ILE B 328 O VAL B 350 SHEET 1 J 2 LEU B 99 GLY B 101 0 SHEET 2 J 2 ILE B 121 LEU B 122 -1 O ILE B 121 N GLY B 101 LINK SG CYS A 50 ZN ZN A1000 1555 1555 2.37 LINK NE2 HIS A 72 ZN ZN A1000 1555 1555 2.17 LINK SG CYS A 103 ZN ZN A2000 1555 1555 2.38 LINK SG CYS A 106 ZN ZN A2000 1555 1555 2.38 LINK SG CYS A 109 ZN ZN A2000 1555 1555 2.39 LINK SG CYS A 117 ZN ZN A2000 1555 1555 2.35 LINK SG CYS A 166 ZN ZN A1000 1555 1555 2.34 LINK ZN ZN A1000 O HOH A2046 1555 1555 2.08 LINK SG CYS B 50 ZN ZN B4000 1555 1555 2.36 LINK NE2 HIS B 72 ZN ZN B4000 1555 1555 2.20 LINK SG CYS B 103 ZN ZN B3000 1555 1555 2.36 LINK SG CYS B 106 ZN ZN B3000 1555 1555 2.35 LINK SG CYS B 109 ZN ZN B3000 1555 1555 2.44 LINK SG CYS B 117 ZN ZN B3000 1555 1555 2.37 LINK SG CYS B 166 ZN ZN B4000 1555 1555 2.35 LINK ZN ZN B4000 O HOH B4083 1555 1555 2.06 CISPEP 1 TYR A 66 PRO A 67 0 -0.07 CISPEP 2 ARG A 346 TYR A 347 0 0.85 CISPEP 3 TYR B 66 PRO B 67 0 -0.14 CISPEP 4 ARG B 346 TYR B 347 0 1.06 SITE 1 AC1 6 CYS A 50 SER A 52 HIS A 72 CYS A 166 SITE 2 AC1 6 NAP A 500 HOH A2046 SITE 1 AC2 4 CYS A 103 CYS A 106 CYS A 109 CYS A 117 SITE 1 AC3 4 CYS B 103 CYS B 106 CYS B 109 CYS B 117 SITE 1 AC4 6 CYS B 50 SER B 52 HIS B 72 CYS B 166 SITE 2 AC4 6 NAP B 600 HOH B4083 SITE 1 AC5 37 HIS A 51 SER A 52 HIS A 55 TRP A 61 SITE 2 AC5 37 CYS A 166 THR A 170 GLY A 191 LEU A 192 SITE 3 AC5 37 GLY A 193 GLY A 194 LEU A 195 SER A 214 SITE 4 AC5 37 THR A 215 SER A 216 LYS A 219 THR A 254 SITE 5 AC5 37 VAL A 255 SER A 256 ALA A 257 VAL A 277 SITE 6 AC5 37 GLY A 278 ALA A 279 SER A 301 GLY A 302 SITE 7 AC5 37 ILE A 303 ASN A 343 ARG A 348 DTT A 700 SITE 8 AC5 37 ZN A1000 HOH A2002 HOH A2007 HOH A2043 SITE 9 AC5 37 HOH A2046 HOH A2148 HOH A2150 HOH A2167 SITE 10 AC5 37 ILE B 292 SITE 1 AC6 37 ILE A 292 CYS B 50 HIS B 51 SER B 52 SITE 2 AC6 37 HIS B 55 TRP B 61 CYS B 166 THR B 170 SITE 3 AC6 37 GLY B 191 LEU B 192 GLY B 193 GLY B 194 SITE 4 AC6 37 LEU B 195 SER B 214 THR B 215 SER B 216 SITE 5 AC6 37 LYS B 219 THR B 254 VAL B 255 SER B 256 SITE 6 AC6 37 ALA B 257 VAL B 277 GLY B 278 ALA B 279 SITE 7 AC6 37 SER B 301 GLY B 302 ILE B 303 ASN B 343 SITE 8 AC6 37 ARG B 348 DTT B 800 ZN B4000 HOH B4003 SITE 9 AC6 37 HOH B4007 HOH B4036 HOH B4083 HOH B4135 SITE 10 AC6 37 HOH B4152 SITE 1 AC7 7 SER A 52 TRP A 61 HIS A 72 CYS A 98 SITE 2 AC7 7 NAP A 500 HOH A2046 HOH A2149 SITE 1 AC8 7 ILE A 292 SER B 52 HIS B 72 CYS B 98 SITE 2 AC8 7 NAP B 600 HOH B4083 HOH B4137 SITE 1 AC9 6 HOH A2090 LEU B 268 SER B 270 LYS B 296 SITE 2 AC9 6 HOH B4085 HOH B4123 CRYST1 76.477 137.796 69.523 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014384 0.00000