HEADER OXIDOREDUCTASE 01-FEB-05 1YQG TITLE CRYSTAL STRUCTURE OF A PYRROLINE-5-CARBOXYLATE REDUCTASE FROM TITLE 2 NEISSERIA MENINGITIDES MC58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRROLINE-5-CARBOXYLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYRROLINE-5-CARBOXYLATE REDUCTASE, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,A.JOACHIMIAK,H.LI,F.COLLART,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 6 16-OCT-24 1YQG 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1YQG 1 VERSN REVDAT 4 24-FEB-09 1YQG 1 VERSN REVDAT 3 07-MAR-06 1YQG 1 JRNL REVDAT 2 27-SEP-05 1YQG 1 AUTHOR JRNL REVDAT 1 08-FEB-05 1YQG 0 SPRSDE 08-FEB-05 1YQG 1XC2 JRNL AUTH B.NOCEK,C.CHANG,H.LI,L.LEZONDRA,D.HOLZLE,F.COLLART, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURES OF DELTA(1)-PYRROLINE-5-CARBOXYLATE JRNL TITL 2 REDUCTASE FROM HUMAN PATHOGENS NEISSERIA MENINGITIDES AND JRNL TITL 3 STREPTOCOCCUS PYOGENES JRNL REF J.MOL.BIOL. V. 354 91 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16233902 JRNL DOI 10.1016/J.JMB.2005.08.036 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2008 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2703 ; 1.516 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 5.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;37.068 ;23.218 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;16.056 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1500 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1002 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1424 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 121 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 1.092 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2044 ; 1.584 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 763 ; 3.881 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 659 ; 5.276 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 106 REMARK 3 RESIDUE RANGE : A 107 A 151 REMARK 3 RESIDUE RANGE : A 152 A 186 REMARK 3 RESIDUE RANGE : A 187 A 211 REMARK 3 RESIDUE RANGE : A 212 A 224 REMARK 3 RESIDUE RANGE : A 225 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2900 31.3830 15.0710 REMARK 3 T TENSOR REMARK 3 T11: -0.0465 T22: -0.0788 REMARK 3 T33: -0.1388 T12: 0.0213 REMARK 3 T13: -0.0338 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.8334 L22: 1.4158 REMARK 3 L33: 1.5468 L12: -1.1992 REMARK 3 L13: -0.6702 L23: 0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: 0.0914 S13: -0.0979 REMARK 3 S21: -0.1540 S22: -0.0472 S23: 0.1431 REMARK 3 S31: -0.1772 S32: -0.2228 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97984, 0.97970 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES, PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.76300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.76300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY OPERATION OF 1-X, 1-Y, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.52600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 49.84500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 263 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB VAL A 149 O HOH A 526 1.74 REMARK 500 NE ARG A 193 O HOH A 467 1.88 REMARK 500 CG MSE A 110 O HOH A 504 2.01 REMARK 500 O HOH A 380 O HOH A 508 2.03 REMARK 500 NH2 ARG A 193 O HOH A 467 2.12 REMARK 500 O HOH A 411 O HOH A 509 2.13 REMARK 500 SE MSE A 11 O HOH A 502 2.16 REMARK 500 ND2 ASN A 180 O HOH A 501 2.18 REMARK 500 O HOH A 326 O HOH A 476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 532 O HOH A 535 2665 1.88 REMARK 500 O HOH A 423 O HOH A 482 2665 2.07 REMARK 500 NH1 ARG A 193 O GLU A 212 2665 2.12 REMARK 500 O HOH A 507 O HOH A 518 3546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 163 -70.36 -97.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XC2 RELATED DB: PDB REMARK 900 CORRECT COORDINATES FOR 1XC2 REMARK 900 RELATED ID: APC28591 RELATED DB: TARGETDB DBREF 1YQG A 1 263 UNP Q9K1N1 Q9K1N1_NEIMB 1 263 SEQADV 1YQG MSE A 1 UNP Q9K1N1 MET 1 MODIFIED RESIDUE SEQADV 1YQG MSE A 11 UNP Q9K1N1 MET 11 MODIFIED RESIDUE SEQADV 1YQG MSE A 70 UNP Q9K1N1 MET 70 MODIFIED RESIDUE SEQADV 1YQG MSE A 110 UNP Q9K1N1 MET 110 MODIFIED RESIDUE SEQADV 1YQG MSE A 124 UNP Q9K1N1 MET 124 MODIFIED RESIDUE SEQADV 1YQG MSE A 142 UNP Q9K1N1 MET 142 MODIFIED RESIDUE SEQADV 1YQG MSE A 157 UNP Q9K1N1 MET 157 MODIFIED RESIDUE SEQADV 1YQG MSE A 189 UNP Q9K1N1 MET 189 MODIFIED RESIDUE SEQADV 1YQG MSE A 258 UNP Q9K1N1 MET 258 MODIFIED RESIDUE SEQRES 1 A 263 MSE ASN VAL TYR PHE LEU GLY GLY GLY ASN MSE ALA ALA SEQRES 2 A 263 ALA VAL ALA GLY GLY LEU VAL LYS GLN GLY GLY TYR ARG SEQRES 3 A 263 ILE TYR ILE ALA ASN ARG GLY ALA GLU LYS ARG GLU ARG SEQRES 4 A 263 LEU GLU LYS GLU LEU GLY VAL GLU THR SER ALA THR LEU SEQRES 5 A 263 PRO GLU LEU HIS SER ASP ASP VAL LEU ILE LEU ALA VAL SEQRES 6 A 263 LYS PRO GLN ASP MSE GLU ALA ALA CYS LYS ASN ILE ARG SEQRES 7 A 263 THR ASN GLY ALA LEU VAL LEU SER VAL ALA ALA GLY LEU SEQRES 8 A 263 SER VAL GLY THR LEU SER ARG TYR LEU GLY GLY THR ARG SEQRES 9 A 263 ARG ILE VAL ARG VAL MSE PRO ASN THR PRO GLY LYS ILE SEQRES 10 A 263 GLY LEU GLY VAL SER GLY MSE TYR ALA GLU ALA GLU VAL SEQRES 11 A 263 SER GLU THR ASP ARG ARG ILE ALA ASP ARG ILE MSE LYS SEQRES 12 A 263 SER VAL GLY LEU THR VAL TRP LEU ASP ASP GLU GLU LYS SEQRES 13 A 263 MSE HIS GLY ILE THR GLY ILE SER GLY SER GLY PRO ALA SEQRES 14 A 263 TYR VAL PHE TYR LEU LEU ASP ALA LEU GLN ASN ALA ALA SEQRES 15 A 263 ILE ARG GLN GLY PHE ASP MSE ALA GLU ALA ARG ALA LEU SEQRES 16 A 263 SER LEU ALA THR PHE LYS GLY ALA VAL ALA LEU ALA GLU SEQRES 17 A 263 GLN THR GLY GLU ASP PHE GLU LYS LEU GLN LYS ASN VAL SEQRES 18 A 263 THR SER LYS GLY GLY THR THR HIS GLU ALA VAL GLU ALA SEQRES 19 A 263 PHE ARG ARG HIS ARG VAL ALA GLU ALA ILE SER GLU GLY SEQRES 20 A 263 VAL CYS ALA CYS VAL ARG ARG SER GLN GLU MSE GLU ARG SEQRES 21 A 263 GLN TYR GLN MODRES 1YQG MSE A 1 MET SELENOMETHIONINE MODRES 1YQG MSE A 11 MET SELENOMETHIONINE MODRES 1YQG MSE A 70 MET SELENOMETHIONINE MODRES 1YQG MSE A 110 MET SELENOMETHIONINE MODRES 1YQG MSE A 124 MET SELENOMETHIONINE MODRES 1YQG MSE A 142 MET SELENOMETHIONINE MODRES 1YQG MSE A 157 MET SELENOMETHIONINE MODRES 1YQG MSE A 189 MET SELENOMETHIONINE MODRES 1YQG MSE A 258 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 70 8 HET MSE A 110 8 HET MSE A 124 8 HET MSE A 142 8 HET MSE A 157 8 HET MSE A 189 8 HET MSE A 258 8 HET SO4 A 301 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *248(H2 O) HELIX 1 1 GLY A 9 GLY A 23 1 15 HELIX 2 2 GLY A 33 LEU A 44 1 12 HELIX 3 3 LYS A 66 LYS A 75 1 10 HELIX 4 4 SER A 92 LEU A 100 1 9 HELIX 5 5 ASN A 112 GLY A 118 5 7 HELIX 6 6 SER A 131 SER A 144 1 14 HELIX 7 7 GLU A 155 SER A 164 1 10 HELIX 8 8 SER A 166 GLN A 185 1 20 HELIX 9 9 ASP A 188 GLY A 211 1 24 HELIX 10 10 ASP A 213 VAL A 221 1 9 HELIX 11 11 GLY A 226 HIS A 238 1 13 HELIX 12 12 ARG A 239 GLN A 261 1 23 SHEET 1 A 8 GLU A 47 SER A 49 0 SHEET 2 A 8 ARG A 26 ALA A 30 1 N ILE A 29 O GLU A 47 SHEET 3 A 8 ASN A 2 LEU A 6 1 N PHE A 5 O ALA A 30 SHEET 4 A 8 VAL A 60 LEU A 63 1 O ILE A 62 N TYR A 4 SHEET 5 A 8 LEU A 83 SER A 86 1 O LEU A 85 N LEU A 63 SHEET 6 A 8 ILE A 106 MSE A 110 1 O VAL A 109 N SER A 86 SHEET 7 A 8 GLY A 120 TYR A 125 -1 O TYR A 125 N ARG A 108 SHEET 8 A 8 GLY A 146 TRP A 150 1 O VAL A 149 N MSE A 124 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C ASN A 10 N MSE A 11 1555 1555 1.34 LINK C MSE A 11 N ALA A 12 1555 1555 1.34 LINK C ASP A 69 N MSE A 70 1555 1555 1.34 LINK C MSE A 70 N GLU A 71 1555 1555 1.34 LINK C VAL A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N PRO A 111 1555 1555 1.34 LINK C GLY A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N TYR A 125 1555 1555 1.34 LINK C ILE A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N LYS A 143 1555 1555 1.34 LINK C LYS A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N HIS A 158 1555 1555 1.32 LINK C ASP A 188 N MSE A 189 1555 1555 1.32 LINK C MSE A 189 N ALA A 190 1555 1555 1.33 LINK C GLU A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N GLU A 259 1555 1555 1.33 SITE 1 AC1 5 ASN A 31 ARG A 32 GLY A 33 LYS A 36 SITE 2 AC1 5 HOH A 516 CRYST1 89.526 49.845 65.534 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015259 0.00000 HETATM 1 N MSE A 1 18.444 38.153 36.211 1.00 40.82 N HETATM 2 CA MSE A 1 18.038 38.502 34.789 1.00 41.06 C HETATM 3 C MSE A 1 17.663 37.241 33.971 1.00 36.86 C HETATM 4 O MSE A 1 18.437 36.296 33.852 1.00 35.08 O HETATM 5 CB MSE A 1 19.096 39.371 34.081 1.00 40.47 C HETATM 6 CG MSE A 1 18.506 40.255 32.918 1.00 41.25 C HETATM 7 SE MSE A 1 19.740 41.112 31.601 1.00 54.20 SE HETATM 8 CE MSE A 1 20.510 39.449 31.228 1.00 25.50 C