data_1YQN # _entry.id 1YQN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YQN pdb_00001yqn 10.2210/pdb1yqn/pdb RCSB RCSB031817 ? ? WWPDB D_1000031817 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GX1 . unspecified PDB 1H47 . unspecified PDB 1H48 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YQN _pdbx_database_status.recvd_initial_deposition_date 2005-02-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sgraja, T.' 1 'Kemp, L.E.' 2 'Ramsden, N.' 3 'Hunter, W.N.' 4 # _citation.id primary _citation.title ;A double mutation of Escherichia coli2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase disrupts six hydrogen bonds with, yet fails to prevent binding of, an isoprenoid diphosphate. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 61 _citation.page_first 625 _citation.page_last 629 _citation.year 2005 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16511114 _citation.pdbx_database_id_DOI 10.1107/S1744309105018762 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sgraja, T.' 1 ? primary 'Kemp, L.E.' 2 ? primary 'Ramsden, N.' 3 ? primary 'Hunter, W.N.' 4 ? # _cell.entry_id 1YQN _cell.length_a 143.778 _cell.length_b 143.778 _cell.length_c 143.778 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQN _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 199 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase' 17078.771 1 4.6.1.12 'R142M, E144L' ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 non-polymer syn "CYTIDINE-5'-DIPHOSPHATE" 403.176 1 ? ? ? ? 5 non-polymer syn 'GERANYL DIPHOSPHATE' 314.209 1 ? ? ? ? 6 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytidine 5-diphosphate, MECPS, MECDP-synthase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLR EAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGMGLGIACEAVALLIKAT K ; _entity_poly.pdbx_seq_one_letter_code_can ;AEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLR EAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGMGLGIACEAVALLIKAT K ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 MET n 1 4 ARG n 1 5 ILE n 1 6 GLY n 1 7 HIS n 1 8 GLY n 1 9 PHE n 1 10 ASP n 1 11 VAL n 1 12 HIS n 1 13 ALA n 1 14 PHE n 1 15 GLY n 1 16 GLY n 1 17 GLU n 1 18 GLY n 1 19 PRO n 1 20 ILE n 1 21 ILE n 1 22 ILE n 1 23 GLY n 1 24 GLY n 1 25 VAL n 1 26 ARG n 1 27 ILE n 1 28 PRO n 1 29 TYR n 1 30 GLU n 1 31 LYS n 1 32 GLY n 1 33 LEU n 1 34 LEU n 1 35 ALA n 1 36 HIS n 1 37 SER n 1 38 ASP n 1 39 GLY n 1 40 ASP n 1 41 VAL n 1 42 ALA n 1 43 LEU n 1 44 HIS n 1 45 ALA n 1 46 LEU n 1 47 THR n 1 48 ASP n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 GLY n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 LEU n 1 57 GLY n 1 58 ASP n 1 59 ILE n 1 60 GLY n 1 61 LYS n 1 62 LEU n 1 63 PHE n 1 64 PRO n 1 65 ASP n 1 66 THR n 1 67 ASP n 1 68 PRO n 1 69 ALA n 1 70 PHE n 1 71 LYS n 1 72 GLY n 1 73 ALA n 1 74 ASP n 1 75 SER n 1 76 ARG n 1 77 GLU n 1 78 LEU n 1 79 LEU n 1 80 ARG n 1 81 GLU n 1 82 ALA n 1 83 TRP n 1 84 ARG n 1 85 ARG n 1 86 ILE n 1 87 GLN n 1 88 ALA n 1 89 LYS n 1 90 GLY n 1 91 TYR n 1 92 THR n 1 93 LEU n 1 94 GLY n 1 95 ASN n 1 96 VAL n 1 97 ASP n 1 98 VAL n 1 99 THR n 1 100 ILE n 1 101 ILE n 1 102 ALA n 1 103 GLN n 1 104 ALA n 1 105 PRO n 1 106 LYS n 1 107 MET n 1 108 LEU n 1 109 PRO n 1 110 HIS n 1 111 ILE n 1 112 PRO n 1 113 GLN n 1 114 MET n 1 115 ARG n 1 116 VAL n 1 117 PHE n 1 118 ILE n 1 119 ALA n 1 120 GLU n 1 121 ASP n 1 122 LEU n 1 123 GLY n 1 124 CYS n 1 125 HIS n 1 126 MET n 1 127 ASP n 1 128 ASP n 1 129 VAL n 1 130 ASN n 1 131 VAL n 1 132 LYS n 1 133 ALA n 1 134 THR n 1 135 THR n 1 136 THR n 1 137 GLU n 1 138 LYS n 1 139 LEU n 1 140 GLY n 1 141 PHE n 1 142 THR n 1 143 GLY n 1 144 MET n 1 145 GLY n 1 146 LEU n 1 147 GLY n 1 148 ILE n 1 149 ALA n 1 150 CYS n 1 151 GLU n 1 152 ALA n 1 153 VAL n 1 154 ALA n 1 155 LEU n 1 156 LEU n 1 157 ILE n 1 158 LYS n 1 159 ALA n 1 160 THR n 1 161 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ispF _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISPF_ECOLI _struct_ref.pdbx_db_accession P62617 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREA WRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YQN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62617 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YQN ALA A 1 ? UNP P62617 ? ? 'cloning artifact' -1 1 1 1YQN GLU A 2 ? UNP P62617 ? ? 'cloning artifact' 0 2 1 1YQN MET A 144 ? UNP P62617 ARG 142 'engineered mutation' 142 3 1 1YQN LEU A 146 ? UNP P62617 GLU 144 'engineered mutation' 144 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CDP non-polymer . "CYTIDINE-5'-DIPHOSPHATE" ? 'C9 H15 N3 O11 P2' 403.176 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GPP non-polymer . 'GERANYL DIPHOSPHATE' ? 'C10 H20 O7 P2' 314.209 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1YQN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details 'PEG MME 2000, sodium acetate, ammonium sulfate, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-08-20 _diffrn_detector.details 'optic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1YQN _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 35.00 _reflns.number_all 9138 _reflns.number_obs 9138 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.1 _reflns_shell.d_res_low 3.27 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.423 _reflns_shell.pdbx_Rsym_value 0.423 _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1329 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YQN _refine.ls_d_res_high 3.11 _refine.ls_d_res_low 32.16 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 9062 _refine.ls_number_reflns_obs 9062 _refine.ls_number_reflns_R_free 434 _refine.ls_percent_reflns_obs 100 _refine.ls_R_factor_all 0.1892 _refine.ls_R_factor_obs 0.1892 _refine.ls_R_factor_R_work 0.1884 _refine.ls_R_factor_R_free 0.209 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1172 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1245 _refine_hist.d_res_high 3.11 _refine_hist.d_res_low 32.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.193 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 3.109 _refine_ls_shell.d_res_low 3.189 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.percent_reflns_obs 100 _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.number_reflns_obs 626 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YQN _struct.title 'E. coli ispF double mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YQN _struct_keywords.pdbx_keywords LYASE _struct_keywords.text '2C-methyl-D-erythriol-2, 4-cyclodiphosphate synthase R142M/E144K (ispF mutant), alpha-beta protein, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a trimer from a monomer in the asymmetric unit generated by a crystallographic three fold axis' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 40 ? ALA A 54 ? ASP A 38 ALA A 52 1 ? 15 HELX_P HELX_P2 2 ASP A 58 ? PHE A 63 ? ASP A 56 PHE A 61 1 ? 6 HELX_P HELX_P3 3 ASP A 74 ? LYS A 89 ? ASP A 72 LYS A 87 1 ? 16 HELX_P HELX_P4 4 MET A 107 ? PRO A 109 ? MET A 105 PRO A 107 5 ? 3 HELX_P HELX_P5 5 HIS A 110 ? LEU A 122 ? HIS A 108 LEU A 120 1 ? 13 HELX_P HELX_P6 6 PHE A 141 ? MET A 144 ? PHE A 139 MET A 142 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 10 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 8 A ZN 400 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc2 metalc ? ? A HIS 12 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 10 A ZN 400 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc3 metalc ? ? A HIS 44 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 42 A ZN 400 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc4 metalc ? ? A GLU 137 OE2 ? ? ? 1_555 C MN . MN ? ? A GLU 135 A MN 500 1_555 ? ? ? ? ? ? ? 1.910 ? ? metalc5 metalc ? ? D CDP . O2B ? ? ? 1_555 B ZN . ZN ? ? A CDP 200 A ZN 400 1_555 ? ? ? ? ? ? ? 1.920 ? ? metalc6 metalc ? ? D CDP . O2A ? ? ? 1_555 C MN . MN ? ? A CDP 200 A MN 500 7_555 ? ? ? ? ? ? ? 1.918 ? ? metalc7 metalc ? ? D CDP . O1B ? ? ? 1_555 C MN . MN ? ? A CDP 200 A MN 500 7_555 ? ? ? ? ? ? ? 1.908 ? ? metalc8 metalc ? ? D CDP . O2A ? ? ? 10_545 C MN . MN ? ? A CDP 200 A MN 500 1_555 ? ? ? ? ? ? ? 1.918 ? ? metalc9 metalc ? ? D CDP . O1B ? ? ? 10_545 C MN . MN ? ? A CDP 200 A MN 500 1_555 ? ? ? ? ? ? ? 1.908 ? ? metalc10 metalc ? ? C MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 500 A HOH 607 1_555 ? ? ? ? ? ? ? 1.927 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 500 A HOH 608 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc12 metalc ? ? C MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 500 A HOH 609 1_555 ? ? ? ? ? ? ? 1.970 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 18 A . ? GLY 16 A PRO 19 A ? PRO 17 A 1 5.26 2 ALA 104 A . ? ALA 102 A PRO 105 A ? PRO 103 A 1 8.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 31 ? LEU A 33 ? LYS A 29 LEU A 31 A 2 GLU A 2 ? GLU A 17 ? GLU A 0 GLU A 15 A 3 GLY A 147 ? LYS A 158 ? GLY A 145 LYS A 156 A 4 THR A 92 ? ILE A 101 ? THR A 90 ILE A 99 A 5 VAL A 129 ? THR A 134 ? VAL A 127 THR A 132 B 1 ILE A 20 ? ILE A 22 ? ILE A 18 ILE A 20 B 2 VAL A 25 ? ILE A 27 ? VAL A 23 ILE A 25 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 32 ? O GLY A 30 N GLY A 15 ? N GLY A 13 A 2 3 N ARG A 4 ? N ARG A 2 O LEU A 156 ? O LEU A 154 A 3 4 O GLU A 151 ? O GLU A 149 N THR A 99 ? N THR A 97 A 4 5 N ILE A 100 ? N ILE A 98 O LYS A 132 ? O LYS A 130 B 1 2 N ILE A 20 ? N ILE A 18 O ILE A 27 ? O ILE A 25 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 400 ? 4 'BINDING SITE FOR RESIDUE ZN A 400' AC2 Software A MN 500 ? 5 'BINDING SITE FOR RESIDUE MN A 500' AC3 Software A CDP 200 ? 21 'BINDING SITE FOR RESIDUE CDP A 200' AC4 Software A GPP 300 ? 11 'BINDING SITE FOR RESIDUE GPP A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 10 ? ASP A 8 . ? 1_555 ? 2 AC1 4 HIS A 12 ? HIS A 10 . ? 1_555 ? 3 AC1 4 HIS A 44 ? HIS A 42 . ? 1_555 ? 4 AC1 4 CDP D . ? CDP A 200 . ? 1_555 ? 5 AC2 5 GLU A 137 ? GLU A 135 . ? 1_555 ? 6 AC2 5 CDP D . ? CDP A 200 . ? 10_545 ? 7 AC2 5 HOH F . ? HOH A 607 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH A 608 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 609 . ? 1_555 ? 10 AC3 21 ASP A 10 ? ASP A 8 . ? 1_555 ? 11 AC3 21 HIS A 12 ? HIS A 10 . ? 1_555 ? 12 AC3 21 HIS A 44 ? HIS A 42 . ? 1_555 ? 13 AC3 21 ASP A 58 ? ASP A 56 . ? 1_555 ? 14 AC3 21 ILE A 59 ? ILE A 57 . ? 1_555 ? 15 AC3 21 GLY A 60 ? GLY A 58 . ? 1_555 ? 16 AC3 21 ALA A 102 ? ALA A 100 . ? 7_555 ? 17 AC3 21 PRO A 105 ? PRO A 103 . ? 7_555 ? 18 AC3 21 LYS A 106 ? LYS A 104 . ? 7_555 ? 19 AC3 21 MET A 107 ? MET A 105 . ? 7_555 ? 20 AC3 21 LEU A 108 ? LEU A 106 . ? 7_555 ? 21 AC3 21 ALA A 133 ? ALA A 131 . ? 7_555 ? 22 AC3 21 THR A 134 ? THR A 132 . ? 7_555 ? 23 AC3 21 THR A 135 ? THR A 133 . ? 7_555 ? 24 AC3 21 GLU A 137 ? GLU A 135 . ? 7_555 ? 25 AC3 21 ZN B . ? ZN A 400 . ? 1_555 ? 26 AC3 21 MN C . ? MN A 500 . ? 7_555 ? 27 AC3 21 HOH F . ? HOH A 607 . ? 7_555 ? 28 AC3 21 HOH F . ? HOH A 608 . ? 7_555 ? 29 AC3 21 HOH F . ? HOH A 609 . ? 7_555 ? 30 AC3 21 HOH F . ? HOH A 617 . ? 1_555 ? 31 AC4 11 PHE A 9 ? PHE A 7 . ? 1_555 ? 32 AC4 11 PHE A 9 ? PHE A 7 . ? 7_555 ? 33 AC4 11 GLY A 140 ? GLY A 138 . ? 7_555 ? 34 AC4 11 GLY A 140 ? GLY A 138 . ? 1_555 ? 35 AC4 11 GLY A 140 ? GLY A 138 . ? 10_545 ? 36 AC4 11 PHE A 141 ? PHE A 139 . ? 7_555 ? 37 AC4 11 PHE A 141 ? PHE A 139 . ? 1_555 ? 38 AC4 11 PHE A 141 ? PHE A 139 . ? 10_545 ? 39 AC4 11 GLU A 151 ? GLU A 149 . ? 7_555 ? 40 AC4 11 GLU A 151 ? GLU A 149 . ? 10_545 ? 41 AC4 11 GLU A 151 ? GLU A 149 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YQN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YQN _atom_sites.fract_transf_matrix[1][1] 0.006955 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006955 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006955 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -1 -1 ALA ALA A . n A 1 2 GLU 2 0 0 GLU GLU A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 ARG 4 2 2 ARG ARG A . n A 1 5 ILE 5 3 3 ILE ILE A . n A 1 6 GLY 6 4 4 GLY GLY A . n A 1 7 HIS 7 5 5 HIS HIS A . n A 1 8 GLY 8 6 6 GLY GLY A . n A 1 9 PHE 9 7 7 PHE PHE A . n A 1 10 ASP 10 8 8 ASP ASP A . n A 1 11 VAL 11 9 9 VAL VAL A . n A 1 12 HIS 12 10 10 HIS HIS A . n A 1 13 ALA 13 11 11 ALA ALA A . n A 1 14 PHE 14 12 12 PHE PHE A . n A 1 15 GLY 15 13 13 GLY GLY A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 GLU 17 15 15 GLU GLU A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 PRO 19 17 17 PRO PRO A . n A 1 20 ILE 20 18 18 ILE ILE A . n A 1 21 ILE 21 19 19 ILE ILE A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 GLY 23 21 21 GLY GLY A . n A 1 24 GLY 24 22 22 GLY GLY A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 ILE 27 25 25 ILE ILE A . n A 1 28 PRO 28 26 26 PRO PRO A . n A 1 29 TYR 29 27 27 TYR TYR A . n A 1 30 GLU 30 28 28 GLU GLU A . n A 1 31 LYS 31 29 29 LYS LYS A . n A 1 32 GLY 32 30 30 GLY GLY A . n A 1 33 LEU 33 31 31 LEU LEU A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 HIS 36 34 34 HIS HIS A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 ASP 38 36 36 ASP ASP A . n A 1 39 GLY 39 37 37 GLY GLY A . n A 1 40 ASP 40 38 38 ASP ASP A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 ALA 42 40 40 ALA ALA A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 HIS 44 42 42 HIS HIS A . n A 1 45 ALA 45 43 43 ALA ALA A . n A 1 46 LEU 46 44 44 LEU LEU A . n A 1 47 THR 47 45 45 THR THR A . n A 1 48 ASP 48 46 46 ASP ASP A . n A 1 49 ALA 49 47 47 ALA ALA A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 LEU 51 49 49 LEU LEU A . n A 1 52 GLY 52 50 50 GLY GLY A . n A 1 53 ALA 53 51 51 ALA ALA A . n A 1 54 ALA 54 52 52 ALA ALA A . n A 1 55 ALA 55 53 53 ALA ALA A . n A 1 56 LEU 56 54 54 LEU LEU A . n A 1 57 GLY 57 55 55 GLY GLY A . n A 1 58 ASP 58 56 56 ASP ASP A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 GLY 60 58 58 GLY GLY A . n A 1 61 LYS 61 59 59 LYS LYS A . n A 1 62 LEU 62 60 60 LEU LEU A . n A 1 63 PHE 63 61 61 PHE PHE A . n A 1 64 PRO 64 62 62 PRO PRO A . n A 1 65 ASP 65 63 63 ASP ASP A . n A 1 66 THR 66 64 64 THR THR A . n A 1 67 ASP 67 65 65 ASP ASP A . n A 1 68 PRO 68 66 66 PRO PRO A . n A 1 69 ALA 69 67 67 ALA ALA A . n A 1 70 PHE 70 68 68 PHE PHE A . n A 1 71 LYS 71 69 69 LYS LYS A . n A 1 72 GLY 72 70 70 GLY GLY A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 ASP 74 72 72 ASP ASP A . n A 1 75 SER 75 73 73 SER SER A . n A 1 76 ARG 76 74 74 ARG ARG A . n A 1 77 GLU 77 75 75 GLU GLU A . n A 1 78 LEU 78 76 76 LEU LEU A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 ARG 80 78 78 ARG ARG A . n A 1 81 GLU 81 79 79 GLU GLU A . n A 1 82 ALA 82 80 80 ALA ALA A . n A 1 83 TRP 83 81 81 TRP TRP A . n A 1 84 ARG 84 82 82 ARG ARG A . n A 1 85 ARG 85 83 83 ARG ARG A . n A 1 86 ILE 86 84 84 ILE ILE A . n A 1 87 GLN 87 85 85 GLN GLN A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 LYS 89 87 87 LYS LYS A . n A 1 90 GLY 90 88 88 GLY GLY A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 THR 92 90 90 THR THR A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 GLY 94 92 92 GLY GLY A . n A 1 95 ASN 95 93 93 ASN ASN A . n A 1 96 VAL 96 94 94 VAL VAL A . n A 1 97 ASP 97 95 95 ASP ASP A . n A 1 98 VAL 98 96 96 VAL VAL A . n A 1 99 THR 99 97 97 THR THR A . n A 1 100 ILE 100 98 98 ILE ILE A . n A 1 101 ILE 101 99 99 ILE ILE A . n A 1 102 ALA 102 100 100 ALA ALA A . n A 1 103 GLN 103 101 101 GLN GLN A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 PRO 105 103 103 PRO PRO A . n A 1 106 LYS 106 104 104 LYS LYS A . n A 1 107 MET 107 105 105 MET MET A . n A 1 108 LEU 108 106 106 LEU LEU A . n A 1 109 PRO 109 107 107 PRO PRO A . n A 1 110 HIS 110 108 108 HIS HIS A . n A 1 111 ILE 111 109 109 ILE ILE A . n A 1 112 PRO 112 110 110 PRO PRO A . n A 1 113 GLN 113 111 111 GLN GLN A . n A 1 114 MET 114 112 112 MET MET A . n A 1 115 ARG 115 113 113 ARG ARG A . n A 1 116 VAL 116 114 114 VAL VAL A . n A 1 117 PHE 117 115 115 PHE PHE A . n A 1 118 ILE 118 116 116 ILE ILE A . n A 1 119 ALA 119 117 117 ALA ALA A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 ASP 121 119 119 ASP ASP A . n A 1 122 LEU 122 120 120 LEU LEU A . n A 1 123 GLY 123 121 121 GLY GLY A . n A 1 124 CYS 124 122 122 CYS CYS A . n A 1 125 HIS 125 123 123 HIS HIS A . n A 1 126 MET 126 124 124 MET MET A . n A 1 127 ASP 127 125 125 ASP ASP A . n A 1 128 ASP 128 126 126 ASP ASP A . n A 1 129 VAL 129 127 127 VAL VAL A . n A 1 130 ASN 130 128 128 ASN ASN A . n A 1 131 VAL 131 129 129 VAL VAL A . n A 1 132 LYS 132 130 130 LYS LYS A . n A 1 133 ALA 133 131 131 ALA ALA A . n A 1 134 THR 134 132 132 THR THR A . n A 1 135 THR 135 133 133 THR THR A . n A 1 136 THR 136 134 134 THR THR A . n A 1 137 GLU 137 135 135 GLU GLU A . n A 1 138 LYS 138 136 136 LYS LYS A . n A 1 139 LEU 139 137 137 LEU LEU A . n A 1 140 GLY 140 138 138 GLY GLY A . n A 1 141 PHE 141 139 139 PHE PHE A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 GLY 143 141 141 GLY GLY A . n A 1 144 MET 144 142 142 MET MET A . n A 1 145 GLY 145 143 143 GLY GLY A . n A 1 146 LEU 146 144 144 LEU LEU A . n A 1 147 GLY 147 145 145 GLY GLY A . n A 1 148 ILE 148 146 146 ILE ILE A . n A 1 149 ALA 149 147 147 ALA ALA A . n A 1 150 CYS 150 148 148 CYS CYS A . n A 1 151 GLU 151 149 149 GLU GLU A . n A 1 152 ALA 152 150 150 ALA ALA A . n A 1 153 VAL 153 151 151 VAL VAL A . n A 1 154 ALA 154 152 152 ALA ALA A . n A 1 155 LEU 155 153 153 LEU LEU A . n A 1 156 LEU 156 154 154 LEU LEU A . n A 1 157 ILE 157 155 155 ILE ILE A . n A 1 158 LYS 158 156 156 LYS LYS A . n A 1 159 ALA 159 157 ? ? ? A . n A 1 160 THR 160 158 ? ? ? A . n A 1 161 LYS 161 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 400 400 ZN ZN A . C 3 MN 1 500 500 MN MN A . D 4 CDP 1 200 200 CDP CDP A . E 5 GPP 1 300 300 GPP GPP A . F 6 HOH 1 601 601 HOH HOH A . F 6 HOH 2 602 602 HOH HOH A . F 6 HOH 3 603 603 HOH HOH A . F 6 HOH 4 604 604 HOH HOH A . F 6 HOH 5 605 605 HOH HOH A . F 6 HOH 6 606 606 HOH HOH A . F 6 HOH 7 607 607 HOH HOH A . F 6 HOH 8 608 608 HOH HOH A . F 6 HOH 9 609 609 HOH HOH A . F 6 HOH 10 610 610 HOH HOH A . F 6 HOH 11 611 611 HOH HOH A . F 6 HOH 12 612 612 HOH HOH A . F 6 HOH 13 613 613 HOH HOH A . F 6 HOH 14 614 614 HOH HOH A . F 6 HOH 15 615 615 HOH HOH A . F 6 HOH 16 616 616 HOH HOH A . F 6 HOH 17 617 617 HOH HOH A . F 6 HOH 18 618 618 HOH HOH A . F 6 HOH 19 619 619 HOH HOH A . F 6 HOH 20 620 620 HOH HOH A . F 6 HOH 21 621 621 HOH HOH A . F 6 HOH 22 622 622 HOH HOH A . F 6 HOH 23 623 623 HOH HOH A . F 6 HOH 24 624 624 HOH HOH A . F 6 HOH 25 625 625 HOH HOH A . F 6 HOH 26 626 626 HOH HOH A . F 6 HOH 27 627 627 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11010 ? 1 MORE -202 ? 1 'SSA (A^2)' 16450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 -z+1/2,-x,y+1/2 0.0000000000 0.0000000000 -1.0000000000 71.8890000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 71.8890000000 3 'crystal symmetry operation' 10_545 -y,z-1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -71.8890000000 -1.0000000000 0.0000000000 0.0000000000 71.8890000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A GPP 300 ? E GPP . 2 1 A GPP 300 ? E GPP . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 10 ? A ASP 8 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 NE2 ? A HIS 12 ? A HIS 10 ? 1_555 101.6 ? 2 OD1 ? A ASP 10 ? A ASP 8 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 ND1 ? A HIS 44 ? A HIS 42 ? 1_555 96.0 ? 3 NE2 ? A HIS 12 ? A HIS 10 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 ND1 ? A HIS 44 ? A HIS 42 ? 1_555 105.9 ? 4 OD1 ? A ASP 10 ? A ASP 8 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 O2B ? D CDP . ? A CDP 200 ? 1_555 120.1 ? 5 NE2 ? A HIS 12 ? A HIS 10 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 O2B ? D CDP . ? A CDP 200 ? 1_555 96.1 ? 6 ND1 ? A HIS 44 ? A HIS 42 ? 1_555 ZN ? B ZN . ? A ZN 400 ? 1_555 O2B ? D CDP . ? A CDP 200 ? 1_555 132.8 ? 7 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O2A ? D CDP . ? A CDP 200 ? 1_555 62.8 ? 8 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 1_555 67.5 ? 9 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 1_555 4.7 ? 10 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O2A ? D CDP . ? A CDP 200 ? 10_545 106.8 ? 11 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O2A ? D CDP . ? A CDP 200 ? 10_545 44.7 ? 12 O1B ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O2A ? D CDP . ? A CDP 200 ? 10_545 40.1 ? 13 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 10_545 100.5 ? 14 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 10_545 94.1 ? 15 O1B ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 10_545 93.4 ? 16 O2A ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O1B ? D CDP . ? A CDP 200 ? 10_545 78.7 ? 17 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 607 ? 1_555 91.5 ? 18 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 607 ? 1_555 95.4 ? 19 O1B ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 607 ? 1_555 95.3 ? 20 O2A ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 607 ? 1_555 102.1 ? 21 O1B ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 607 ? 1_555 167.2 ? 22 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 85.9 ? 23 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 148.2 ? 24 O1B ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 152.8 ? 25 O2A ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 161.8 ? 26 O1B ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 86.2 ? 27 O ? F HOH . ? A HOH 607 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 608 ? 1_555 90.4 ? 28 OE2 ? A GLU 137 ? A GLU 135 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 175.7 ? 29 O2A ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 119.0 ? 30 O1B ? D CDP . ? A CDP 200 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 114.3 ? 31 O2A ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 75.6 ? 32 O1B ? D CDP . ? A CDP 200 ? 10_545 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 83.4 ? 33 O ? F HOH . ? A HOH 607 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 84.4 ? 34 O ? F HOH . ? A HOH 608 ? 1_555 MN ? C MN . ? A MN 500 ? 1_555 O ? F HOH . ? A HOH 609 ? 1_555 92.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' pdbx_struct_special_symmetry 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_symmetry' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_symmetry' 33 4 'Structure model' '_struct_ref_seq_dif.details' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 AMoRE phasing . ? 3 REFMAC refinement 5.0 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 35 ? ? -96.38 -138.95 2 1 ASP A 63 ? ? -56.03 -8.89 3 1 THR A 64 ? ? -120.41 -50.80 4 1 ASP A 65 ? ? -25.64 138.15 5 1 ASP A 125 ? ? -68.74 3.73 6 1 MET A 142 ? ? -96.39 31.36 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 156 ? CG ? A LYS 158 CG 2 1 Y 1 A LYS 156 ? CD ? A LYS 158 CD 3 1 Y 1 A LYS 156 ? CE ? A LYS 158 CE 4 1 Y 1 A LYS 156 ? NZ ? A LYS 158 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 157 ? A ALA 159 2 1 Y 1 A THR 158 ? A THR 160 3 1 Y 1 A LYS 159 ? A LYS 161 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'MANGANESE (II) ION' MN 4 "CYTIDINE-5'-DIPHOSPHATE" CDP 5 'GERANYL DIPHOSPHATE' GPP 6 water HOH #