HEADER OXIDOREDUCTASE 02-FEB-05 1YQX TITLE SINAPYL ALCOHOL DEHYDROGENASE AT 2.5 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINAPYL ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.195; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TREMULOIDES; SOURCE 3 ORGANISM_COMMON: QUAKING ASPEN; SOURCE 4 ORGANISM_TAXID: 3693; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS LIGNIN MONOLIGNOL OXIDOREDUCTASE ZINC-DEPENDENT, PLANT-DEFENSE, KEYWDS 2 BIOSYNTHESIS, MEDIUM-CHAIN DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.K.BOMATI,J.P.NOEL REVDAT 5 03-APR-24 1YQX 1 REMARK REVDAT 4 14-FEB-24 1YQX 1 REMARK REVDAT 3 20-OCT-21 1YQX 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1YQX 1 VERSN REVDAT 1 12-JUL-05 1YQX 0 JRNL AUTH E.K.BOMATI,J.P.NOEL JRNL TITL STRUCTURAL AND KINETIC BASIS FOR SUBSTRATE SELECTIVITY IN JRNL TITL 2 POPULUS TREMULOIDES SINAPYL ALCOHOL DEHYDROGENASE. JRNL REF PLANT CELL V. 17 1598 2005 JRNL REFN ISSN 1040-4651 JRNL PMID 15829607 JRNL DOI 10.1105/TPC.104.029983 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 109201.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 22921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2268 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2936 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 300 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.60000 REMARK 3 B22 (A**2) : -10.16000 REMARK 3 B33 (A**2) : 5.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.520 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 28.14 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : N.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : N.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: UNREFINED STRUCTURE OF THE SAME PROTEIN SOLVED BY REMARK 200 MAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL MONOMETHYL ETHER REMARK 280 5000, POLYETHYLENE GLYCOL 400, MOPSO, BETA-MERCAPTOETHANOL, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.18100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.08250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.18100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.08250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 10.86 -68.18 REMARK 500 PHE A 30 -157.61 -148.03 REMARK 500 CYS A 47 110.44 -162.01 REMARK 500 HIS A 72 35.82 -142.74 REMARK 500 SER A 105 -23.70 -167.33 REMARK 500 CYS A 166 -60.04 -126.46 REMARK 500 PRO A 183 150.96 -49.94 REMARK 500 ILE A 303 -131.98 30.43 REMARK 500 TYR A 347 -65.73 95.68 REMARK 500 ALA A 359 -9.12 -48.40 REMARK 500 GLN B 21 7.81 -68.41 REMARK 500 PHE B 30 -153.42 -144.50 REMARK 500 SER B 64 140.20 -27.32 REMARK 500 PRO B 70 -178.23 -68.15 REMARK 500 HIS B 72 32.56 -145.76 REMARK 500 ALA B 102 179.33 175.40 REMARK 500 SER B 105 52.77 -164.17 REMARK 500 LEU B 113 61.27 -118.62 REMARK 500 ASN B 155 33.78 -85.62 REMARK 500 CYS B 166 -63.08 -135.91 REMARK 500 ASP B 181 60.88 -100.23 REMARK 500 ARG B 236 44.77 -89.90 REMARK 500 ALA B 279 65.31 -111.66 REMARK 500 PRO B 280 164.93 -44.71 REMARK 500 ILE B 303 -140.37 38.17 REMARK 500 ASP B 331 2.85 -66.35 REMARK 500 TYR B 347 -53.00 94.96 REMARK 500 ALA B 358 -31.40 -37.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 50 SG REMARK 620 2 HIS A 72 NE2 102.7 REMARK 620 3 CYS A 166 SG 129.6 110.5 REMARK 620 4 HOH A2001 O 118.7 93.5 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 106 SG 104.3 REMARK 620 3 CYS A 109 SG 125.2 101.7 REMARK 620 4 CYS A 117 SG 100.2 110.5 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 50 SG REMARK 620 2 HIS B 72 NE2 104.4 REMARK 620 3 CYS B 166 SG 124.2 111.0 REMARK 620 4 HOH B4001 O 107.7 103.0 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B3000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 CYS B 106 SG 102.5 REMARK 620 3 CYS B 109 SG 116.9 110.1 REMARK 620 4 CYS B 117 SG 106.1 119.0 102.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YQD RELATED DB: PDB REMARK 900 SINAPYL ALCOHOL DEHYDROGENASE COMPLEXED WITH NADP+ AT 1.65 ANGSTROM REMARK 900 RESOLUTION DBREF 1YQX A 1 362 UNP Q94G59 Q94G59_POPTM 1 362 DBREF 1YQX B 1 362 UNP Q94G59 Q94G59_POPTM 1 362 SEQADV 1YQX GLY A -3 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX SER A -2 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX HIS A -1 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX GLY A 0 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX ASN A 140 UNP Q94G59 ASP 140 ENGINEERED MUTATION SEQADV 1YQX GLY B -3 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX SER B -2 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX HIS B -1 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX GLY B 0 UNP Q94G59 CLONING ARTIFACT SEQADV 1YQX ASN B 140 UNP Q94G59 ASP 140 ENGINEERED MUTATION SEQRES 1 A 366 GLY SER HIS GLY MET SER LYS SER PRO GLU GLU GLU HIS SEQRES 2 A 366 PRO VAL LYS ALA PHE GLY TRP ALA ALA ARG ASP GLN SER SEQRES 3 A 366 GLY HIS LEU SER PRO PHE ASN PHE SER ARG ARG ALA THR SEQRES 4 A 366 GLY GLU GLU ASP VAL ARG PHE LYS VAL LEU TYR CYS GLY SEQRES 5 A 366 VAL CYS HIS SER ASP LEU HIS SER ILE LYS ASN ASP TRP SEQRES 6 A 366 GLY PHE SER MET TYR PRO LEU VAL PRO GLY HIS GLU ILE SEQRES 7 A 366 VAL GLY GLU VAL THR GLU VAL GLY SER LYS VAL LYS LYS SEQRES 8 A 366 VAL ASN VAL GLY ASP LYS VAL GLY VAL GLY CYS LEU VAL SEQRES 9 A 366 GLY ALA CYS HIS SER CYS GLU SER CYS ALA ASN ASP LEU SEQRES 10 A 366 GLU ASN TYR CYS PRO LYS MET ILE LEU THR TYR ALA SER SEQRES 11 A 366 ILE TYR HIS ASP GLY THR ILE THR TYR GLY GLY TYR SER SEQRES 12 A 366 ASN HIS MET VAL ALA ASN GLU ARG TYR ILE ILE ARG PHE SEQRES 13 A 366 PRO ASP ASN MET PRO LEU ASP GLY GLY ALA PRO LEU LEU SEQRES 14 A 366 CYS ALA GLY ILE THR VAL TYR SER PRO LEU LYS TYR PHE SEQRES 15 A 366 GLY LEU ASP GLU PRO GLY LYS HIS ILE GLY ILE VAL GLY SEQRES 16 A 366 LEU GLY GLY LEU GLY HIS VAL ALA VAL LYS PHE ALA LYS SEQRES 17 A 366 ALA PHE GLY SER LYS VAL THR VAL ILE SER THR SER PRO SEQRES 18 A 366 SER LYS LYS GLU GLU ALA LEU LYS ASN PHE GLY ALA ASP SEQRES 19 A 366 SER PHE LEU VAL SER ARG ASP GLN GLU GLN MET GLN ALA SEQRES 20 A 366 ALA ALA GLY THR LEU ASP GLY ILE ILE ASP THR VAL SER SEQRES 21 A 366 ALA VAL HIS PRO LEU LEU PRO LEU PHE GLY LEU LEU LYS SEQRES 22 A 366 SER HIS GLY LYS LEU ILE LEU VAL GLY ALA PRO GLU LYS SEQRES 23 A 366 PRO LEU GLU LEU PRO ALA PHE SER LEU ILE ALA GLY ARG SEQRES 24 A 366 LYS ILE VAL ALA GLY SER GLY ILE GLY GLY MET LYS GLU SEQRES 25 A 366 THR GLN GLU MET ILE ASP PHE ALA ALA LYS HIS ASN ILE SEQRES 26 A 366 THR ALA ASP ILE GLU VAL ILE SER THR ASP TYR LEU ASN SEQRES 27 A 366 THR ALA MET GLU ARG LEU ALA LYS ASN ASP VAL ARG TYR SEQRES 28 A 366 ARG PHE VAL ILE ASP VAL GLY ASN THR LEU ALA ALA THR SEQRES 29 A 366 LYS PRO SEQRES 1 B 366 GLY SER HIS GLY MET SER LYS SER PRO GLU GLU GLU HIS SEQRES 2 B 366 PRO VAL LYS ALA PHE GLY TRP ALA ALA ARG ASP GLN SER SEQRES 3 B 366 GLY HIS LEU SER PRO PHE ASN PHE SER ARG ARG ALA THR SEQRES 4 B 366 GLY GLU GLU ASP VAL ARG PHE LYS VAL LEU TYR CYS GLY SEQRES 5 B 366 VAL CYS HIS SER ASP LEU HIS SER ILE LYS ASN ASP TRP SEQRES 6 B 366 GLY PHE SER MET TYR PRO LEU VAL PRO GLY HIS GLU ILE SEQRES 7 B 366 VAL GLY GLU VAL THR GLU VAL GLY SER LYS VAL LYS LYS SEQRES 8 B 366 VAL ASN VAL GLY ASP LYS VAL GLY VAL GLY CYS LEU VAL SEQRES 9 B 366 GLY ALA CYS HIS SER CYS GLU SER CYS ALA ASN ASP LEU SEQRES 10 B 366 GLU ASN TYR CYS PRO LYS MET ILE LEU THR TYR ALA SER SEQRES 11 B 366 ILE TYR HIS ASP GLY THR ILE THR TYR GLY GLY TYR SER SEQRES 12 B 366 ASN HIS MET VAL ALA ASN GLU ARG TYR ILE ILE ARG PHE SEQRES 13 B 366 PRO ASP ASN MET PRO LEU ASP GLY GLY ALA PRO LEU LEU SEQRES 14 B 366 CYS ALA GLY ILE THR VAL TYR SER PRO LEU LYS TYR PHE SEQRES 15 B 366 GLY LEU ASP GLU PRO GLY LYS HIS ILE GLY ILE VAL GLY SEQRES 16 B 366 LEU GLY GLY LEU GLY HIS VAL ALA VAL LYS PHE ALA LYS SEQRES 17 B 366 ALA PHE GLY SER LYS VAL THR VAL ILE SER THR SER PRO SEQRES 18 B 366 SER LYS LYS GLU GLU ALA LEU LYS ASN PHE GLY ALA ASP SEQRES 19 B 366 SER PHE LEU VAL SER ARG ASP GLN GLU GLN MET GLN ALA SEQRES 20 B 366 ALA ALA GLY THR LEU ASP GLY ILE ILE ASP THR VAL SER SEQRES 21 B 366 ALA VAL HIS PRO LEU LEU PRO LEU PHE GLY LEU LEU LYS SEQRES 22 B 366 SER HIS GLY LYS LEU ILE LEU VAL GLY ALA PRO GLU LYS SEQRES 23 B 366 PRO LEU GLU LEU PRO ALA PHE SER LEU ILE ALA GLY ARG SEQRES 24 B 366 LYS ILE VAL ALA GLY SER GLY ILE GLY GLY MET LYS GLU SEQRES 25 B 366 THR GLN GLU MET ILE ASP PHE ALA ALA LYS HIS ASN ILE SEQRES 26 B 366 THR ALA ASP ILE GLU VAL ILE SER THR ASP TYR LEU ASN SEQRES 27 B 366 THR ALA MET GLU ARG LEU ALA LYS ASN ASP VAL ARG TYR SEQRES 28 B 366 ARG PHE VAL ILE ASP VAL GLY ASN THR LEU ALA ALA THR SEQRES 29 B 366 LYS PRO HET ZN A1000 1 HET ZN A2000 1 HET NAP A 500 48 HET ZN B3000 1 HET ZN B4000 1 HET NAP B 600 48 HETNAM ZN ZINC ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 9 HOH *40(H2 O) HELIX 1 1 CYS A 50 LYS A 58 1 9 HELIX 2 2 CYS A 106 ASN A 111 1 6 HELIX 3 3 LEU A 113 CYS A 117 5 5 HELIX 4 4 ARG A 147 ILE A 149 5 3 HELIX 5 5 GLY A 161 LEU A 165 5 5 HELIX 6 6 CYS A 166 PHE A 178 1 13 HELIX 7 7 GLY A 193 GLY A 207 1 15 HELIX 8 8 SER A 216 SER A 218 5 3 HELIX 9 9 LYS A 219 ASN A 226 1 8 HELIX 10 10 ASP A 237 ALA A 244 1 8 HELIX 11 11 LEU A 261 GLY A 266 1 6 HELIX 12 12 PRO A 287 ALA A 293 1 7 HELIX 13 13 GLY A 305 HIS A 319 1 15 HELIX 14 14 SER A 329 ASP A 331 5 3 HELIX 15 15 TYR A 332 LYS A 342 1 11 HELIX 16 16 VAL A 353 LEU A 357 1 5 HELIX 17 17 ALA A 358 LYS A 361 5 4 HELIX 18 18 CYS B 50 LYS B 58 1 9 HELIX 19 19 CYS B 106 ASN B 111 1 6 HELIX 20 20 LEU B 113 CYS B 117 5 5 HELIX 21 21 ARG B 147 ILE B 149 5 3 HELIX 22 22 PRO B 157 ALA B 162 1 6 HELIX 23 23 PRO B 163 LEU B 165 5 3 HELIX 24 24 CYS B 166 PHE B 178 1 13 HELIX 25 25 GLY B 193 PHE B 206 1 14 HELIX 26 26 SER B 216 SER B 218 5 3 HELIX 27 27 LYS B 219 ASN B 226 1 8 HELIX 28 28 ASP B 237 ALA B 244 1 8 HELIX 29 29 LEU B 261 LEU B 267 1 7 HELIX 30 30 PRO B 287 ALA B 293 1 7 HELIX 31 31 GLY B 305 HIS B 319 1 15 HELIX 32 32 SER B 329 ASP B 331 5 3 HELIX 33 33 TYR B 332 LYS B 342 1 11 HELIX 34 34 ASP B 352 LEU B 357 1 6 HELIX 35 35 ALA B 358 LYS B 361 5 4 SHEET 1 A 2 VAL A 11 ALA A 18 0 SHEET 2 A 2 LEU A 25 ARG A 32 -1 O PHE A 28 N GLY A 15 SHEET 1 B 5 HIS A 141 ASN A 145 0 SHEET 2 B 5 ASP A 39 GLY A 48 -1 N PHE A 42 O MET A 142 SHEET 3 B 5 ILE A 74 VAL A 81 -1 O GLU A 80 N ARG A 41 SHEET 4 B 5 LYS A 93 VAL A 96 -1 O VAL A 94 N GLY A 76 SHEET 5 B 5 ILE A 150 ARG A 151 -1 O ILE A 150 N GLY A 95 SHEET 1 C 4 HIS A 141 ASN A 145 0 SHEET 2 C 4 ASP A 39 GLY A 48 -1 N PHE A 42 O MET A 142 SHEET 3 C 4 ARG A 348 ASP A 352 -1 O ILE A 351 N CYS A 47 SHEET 4 C 4 ILE A 325 ILE A 328 1 N GLU A 326 O ARG A 348 SHEET 1 D 2 LEU A 99 GLY A 101 0 SHEET 2 D 2 ILE A 121 LEU A 122 -1 O ILE A 121 N GLY A 101 SHEET 1 E12 SER A 231 VAL A 234 0 SHEET 2 E12 LYS A 209 SER A 214 1 N SER A 214 O LEU A 233 SHEET 3 E12 HIS A 186 VAL A 190 1 N ILE A 187 O THR A 211 SHEET 4 E12 LEU A 248 ASP A 253 1 O ILE A 252 N GLY A 188 SHEET 5 E12 LEU A 268 LEU A 276 1 O ILE A 275 N ILE A 251 SHEET 6 E12 ILE A 297 GLY A 300 1 O ALA A 299 N LEU A 276 SHEET 7 E12 ILE B 297 GLY B 300 -1 O VAL B 298 N VAL A 298 SHEET 8 E12 LEU B 268 LEU B 276 1 N LEU B 276 O ALA B 299 SHEET 9 E12 LEU B 248 ASP B 253 1 N ASP B 253 O ILE B 275 SHEET 10 E12 HIS B 186 VAL B 190 1 N GLY B 188 O ILE B 252 SHEET 11 E12 LYS B 209 SER B 214 1 O LYS B 209 N ILE B 187 SHEET 12 E12 SER B 231 VAL B 234 1 O SER B 231 N VAL B 212 SHEET 1 F 2 LEU A 284 LEU A 286 0 SHEET 2 F 2 LEU B 284 LEU B 286 -1 O LEU B 286 N LEU A 284 SHEET 1 G 2 VAL B 11 ALA B 18 0 SHEET 2 G 2 LEU B 25 ARG B 32 -1 O PHE B 28 N GLY B 15 SHEET 1 H 5 HIS B 141 ASN B 145 0 SHEET 2 H 5 ASP B 39 GLY B 48 -1 N PHE B 42 O MET B 142 SHEET 3 H 5 ILE B 74 VAL B 81 -1 O GLU B 80 N ARG B 41 SHEET 4 H 5 LYS B 93 VAL B 96 -1 O VAL B 96 N ILE B 74 SHEET 5 H 5 ILE B 150 ARG B 151 -1 O ILE B 150 N GLY B 95 SHEET 1 I 4 HIS B 141 ASN B 145 0 SHEET 2 I 4 ASP B 39 GLY B 48 -1 N PHE B 42 O MET B 142 SHEET 3 I 4 ARG B 348 ILE B 351 -1 O ILE B 351 N CYS B 47 SHEET 4 I 4 ILE B 325 ILE B 328 1 N ILE B 328 O VAL B 350 SHEET 1 J 2 LEU B 99 GLY B 101 0 SHEET 2 J 2 ILE B 121 LEU B 122 -1 O ILE B 121 N GLY B 101 LINK SG CYS A 50 ZN ZN A1000 1555 1555 2.39 LINK NE2 HIS A 72 ZN ZN A1000 1555 1555 2.42 LINK SG CYS A 103 ZN ZN A2000 1555 1555 2.36 LINK SG CYS A 106 ZN ZN A2000 1555 1555 2.71 LINK SG CYS A 109 ZN ZN A2000 1555 1555 2.45 LINK SG CYS A 117 ZN ZN A2000 1555 1555 2.53 LINK SG CYS A 166 ZN ZN A1000 1555 1555 2.39 LINK ZN ZN A1000 O HOH A2001 1555 1555 2.65 LINK SG CYS B 50 ZN ZN B4000 1555 1555 2.55 LINK NE2 HIS B 72 ZN ZN B4000 1555 1555 2.19 LINK SG CYS B 103 ZN ZN B3000 1555 1555 2.33 LINK SG CYS B 106 ZN ZN B3000 1555 1555 2.48 LINK SG CYS B 109 ZN ZN B3000 1555 1555 2.35 LINK SG CYS B 117 ZN ZN B3000 1555 1555 2.55 LINK SG CYS B 166 ZN ZN B4000 1555 1555 2.28 LINK ZN ZN B4000 O HOH B4001 1555 1555 2.41 CISPEP 1 TYR A 66 PRO A 67 0 -1.35 CISPEP 2 TYR B 66 PRO B 67 0 -1.02 SITE 1 AC1 5 CYS A 50 HIS A 72 CYS A 166 NAP A 500 SITE 2 AC1 5 HOH A2001 SITE 1 AC2 5 CYS A 103 HIS A 104 CYS A 106 CYS A 109 SITE 2 AC2 5 CYS A 117 SITE 1 AC3 4 CYS B 103 CYS B 106 CYS B 109 CYS B 117 SITE 1 AC4 5 CYS B 50 HIS B 72 CYS B 166 NAP B 600 SITE 2 AC4 5 HOH B4001 SITE 1 AC5 30 HIS A 51 SER A 52 HIS A 55 TRP A 61 SITE 2 AC5 30 CYS A 166 THR A 170 GLY A 191 LEU A 192 SITE 3 AC5 30 GLY A 193 GLY A 194 LEU A 195 SER A 214 SITE 4 AC5 30 THR A 215 SER A 216 LYS A 219 THR A 254 SITE 5 AC5 30 VAL A 255 SER A 256 ALA A 257 VAL A 277 SITE 6 AC5 30 GLY A 278 ALA A 279 SER A 301 GLY A 302 SITE 7 AC5 30 ILE A 303 ASN A 343 ARG A 348 ZN A1000 SITE 8 AC5 30 HOH A2003 ILE B 292 SITE 1 AC6 29 ILE A 292 CYS B 50 HIS B 51 SER B 52 SITE 2 AC6 29 HIS B 55 CYS B 166 THR B 170 GLY B 191 SITE 3 AC6 29 LEU B 192 GLY B 193 GLY B 194 LEU B 195 SITE 4 AC6 29 SER B 214 THR B 215 SER B 216 LYS B 219 SITE 5 AC6 29 THR B 254 VAL B 255 SER B 256 VAL B 277 SITE 6 AC6 29 GLY B 278 ALA B 279 SER B 301 GLY B 302 SITE 7 AC6 29 ILE B 303 ASN B 343 ARG B 348 ZN B4000 SITE 8 AC6 29 HOH B4014 CRYST1 76.362 138.165 67.629 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014787 0.00000