HEADER HYDROLASE 03-FEB-05 1YR7 TITLE PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GTP-GAMMA-S BOUND FORM FROM TITLE 2 PYROCOCCUS ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP(GTP)BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-248; COMPND 5 SYNONYM: PAB0955 GENE PRODUCT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PAB0955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCRT7/NT-TOPO KEYWDS GTP BINDING PROTEIN, GTPASE, P-LOOP, ROSSMANN FOLD, GTP ANALOG, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,P.CARPENTIER,J.ARMENGAUD,D.HOUSSET REVDAT 7 25-OCT-23 1YR7 1 REMARK SEQADV LINK REVDAT 6 11-OCT-17 1YR7 1 REMARK REVDAT 5 12-NOV-14 1YR7 1 KEYWDS REVDAT 4 13-JUL-11 1YR7 1 VERSN REVDAT 3 09-MAR-11 1YR7 1 JRNL AUTHOR REMARK REVDAT 2 24-FEB-09 1YR7 1 VERSN REVDAT 1 14-FEB-06 1YR7 0 JRNL AUTH S.GRAS,V.CHAUMONT,B.FERNANDEZ,P.CARPENTIER, JRNL AUTH 2 F.CHARRIER-SAVOURNIN,S.SCHMITT,C.PINEAU,D.FLAMENT,A.HECKER, JRNL AUTH 3 P.FORTERRE,J.ARMENGAUD,D.HOUSSET JRNL TITL STRUCTURAL INSIGHTS INTO A NEW HOMODIMERIC SELF-ACTIVATED JRNL TITL 2 GTPASE FAMILY. JRNL REF EMBO REP. V. 8 569 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17468740 JRNL DOI 10.1038/SJ.EMBOR.7400958 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GRAS,B.FERNANDEZ,V.CHAUMONT,P.CARPENTIER,J.ARMENGAUD, REMARK 1 AUTH 2 D.HOUSSET REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE PAB0955 GENE PRODUCT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 208 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 DOI 10.1107/S1744309105000035 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 12488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : -2.70000 REMARK 3 B12 (A**2) : 0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2094 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2844 ; 1.296 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.595 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;38.069 ;24.314 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;18.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1559 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1106 ; 0.261 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1429 ; 0.331 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.324 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.360 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.411 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 1.084 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1994 ; 1.809 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 956 ; 1.429 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 1.921 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 17.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : 0.23200 REMARK 200 FOR SHELL : 6.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YR6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M TRI-SODIUM CITRATE DIHYDRATE, 20MM DTT, 0.65MM GTP-GAMMA-S, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.26000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.63000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.63000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE TWO REMARK 300 FOLD AXIS : Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.89000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 487 REMARK 465 ARG A 488 REMARK 465 GLY A 489 REMARK 465 SER A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 ALA A 499 REMARK 465 THR A 243 REMARK 465 CYS A 244 REMARK 465 GLY A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 THR A 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 138 O HOH A 573 2.00 REMARK 500 S1G GSP A 401 O HOH A 512 2.01 REMARK 500 OD1 ASP A 132 O HOH A 558 2.05 REMARK 500 O MET A 209 N THR A 211 2.05 REMARK 500 OD1 ASP A 232 O HOH A 561 2.07 REMARK 500 O HOH A 550 O HOH A 558 2.08 REMARK 500 S1G GSP A 401 O HOH A 506 2.11 REMARK 500 OE2 GLU A 79 O HOH A 551 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 41 NH2 ARG A 177 6655 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 109.97 37.34 REMARK 500 GLU A 25 38.91 -72.35 REMARK 500 ARG A 61 25.18 -76.50 REMARK 500 LYS A 137 -77.23 -113.09 REMARK 500 GLU A 183 -81.87 -70.55 REMARK 500 LEU A 194 40.23 -74.59 REMARK 500 ALA A 203 -44.00 138.60 REMARK 500 MET A 206 -85.57 -72.06 REMARK 500 MET A 210 -48.25 36.14 REMARK 500 GLU A 212 -76.84 -56.63 REMARK 500 VAL A 213 -80.66 -14.82 REMARK 500 LEU A 214 107.18 144.67 REMARK 500 PRO A 215 -67.88 -24.51 REMARK 500 PRO A 216 -145.12 -54.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YR6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1YR8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GTP BOUND FORM REMARK 900 RELATED ID: 1YR9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND PO4 BOUND FORM REMARK 900 RELATED ID: 1YRA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP BOUND FORM REMARK 900 RELATED ID: 1YRB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND MG BOUND FORM REMARK 900 RELATED ID: 2OXR RELATED DB: PDB DBREF 1YR7 A 1 248 GB 5458856 CAB50343 30 277 SEQADV 1YR7 MET A 487 GB 5458856 EXPRESSION TAG SEQADV 1YR7 ARG A 488 GB 5458856 EXPRESSION TAG SEQADV 1YR7 GLY A 489 GB 5458856 EXPRESSION TAG SEQADV 1YR7 SER A 490 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 491 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 492 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 493 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 494 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 495 GB 5458856 EXPRESSION TAG SEQADV 1YR7 HIS A 496 GB 5458856 EXPRESSION TAG SEQADV 1YR7 GLY A 497 GB 5458856 EXPRESSION TAG SEQADV 1YR7 MET A 498 GB 5458856 EXPRESSION TAG SEQADV 1YR7 ALA A 499 GB 5458856 EXPRESSION TAG SEQADV 1YR7 SER A 500 GB 5458856 EXPRESSION TAG SEQRES 1 A 262 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 262 SER MET ILE VAL VAL PHE VAL GLY THR ALA GLY SER GLY SEQRES 3 A 262 LYS THR THR LEU THR GLY GLU PHE GLY ARG TYR LEU GLU SEQRES 4 A 262 ASP ASN TYR LYS VAL ALA TYR VAL ASN LEU ASP THR GLY SEQRES 5 A 262 VAL LYS GLU LEU PRO TYR GLU PRO SER ILE ASP VAL ARG SEQRES 6 A 262 GLU PHE VAL THR VAL GLU GLU ILE MET ARG GLU GLY TYR SEQRES 7 A 262 GLY PRO ASN GLY ALA ILE VAL GLU SER TYR ASP ARG LEU SEQRES 8 A 262 MET GLU LYS PHE ASN GLU TYR LEU ASN LYS ILE LEU ARG SEQRES 9 A 262 LEU GLU LYS GLU ASN ASP TYR VAL LEU ILE ASP THR PRO SEQRES 10 A 262 GLY GLN MET GLU THR PHE LEU PHE HIS GLU PHE GLY VAL SEQRES 11 A 262 ARG LEU MET GLU ASN LEU PRO TYR PRO LEU VAL VAL TYR SEQRES 12 A 262 ILE SER ASP PRO GLU ILE LEU LYS LYS PRO ASN ASP TYR SEQRES 13 A 262 CYS PHE VAL ARG PHE PHE ALA LEU LEU ILE ASP LEU ARG SEQRES 14 A 262 LEU GLY ALA THR THR ILE PRO ALA LEU ASN LYS VAL ASP SEQRES 15 A 262 LEU LEU SER GLU GLU GLU LYS GLU ARG HIS ARG LYS TYR SEQRES 16 A 262 PHE GLU ASP ILE ASP TYR LEU THR ALA ARG LEU LYS LEU SEQRES 17 A 262 ASP PRO SER MET GLN GLY LEU MET ALA TYR LYS MET CYS SEQRES 18 A 262 SER MET MET THR GLU VAL LEU PRO PRO VAL ARG VAL LEU SEQRES 19 A 262 TYR LEU SER ALA LYS THR ARG GLU GLY PHE GLU ASP LEU SEQRES 20 A 262 GLU THR LEU ALA TYR GLU HIS TYR CYS THR CYS GLY ASP SEQRES 21 A 262 LEU THR HET GSP A 401 32 HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE FORMUL 2 GSP C10 H16 N5 O13 P3 S FORMUL 3 HOH *86(H2 O) HELIX 1 1 GLY A 12 GLU A 25 1 14 HELIX 2 2 ARG A 51 PHE A 53 5 3 HELIX 3 3 THR A 55 ARG A 61 1 7 HELIX 4 4 GLY A 65 MET A 78 1 14 HELIX 5 5 LYS A 80 ASN A 95 1 16 HELIX 6 6 GLN A 105 HIS A 112 1 8 HELIX 7 7 HIS A 112 ASN A 121 1 10 HELIX 8 8 ASP A 132 LEU A 136 5 5 HELIX 9 9 LYS A 138 GLY A 157 1 20 HELIX 10 10 LYS A 166 LEU A 170 5 5 HELIX 11 11 SER A 171 GLU A 183 1 13 HELIX 12 12 ASP A 184 LEU A 194 1 11 HELIX 13 13 SER A 197 SER A 208 1 12 HELIX 14 14 GLY A 229 CYS A 242 1 14 SHEET 1 A 7 ILE A 48 ASP A 49 0 SHEET 2 A 7 VAL A 30 ASN A 34 1 N ASN A 34 O ILE A 48 SHEET 3 A 7 TYR A 97 ASP A 101 1 O ASP A 101 N VAL A 33 SHEET 4 A 7 ILE A 2 GLY A 7 1 N VAL A 3 O ILE A 100 SHEET 5 A 7 LEU A 126 SER A 131 1 O VAL A 128 N VAL A 4 SHEET 6 A 7 THR A 160 LEU A 164 1 O ALA A 163 N TYR A 129 SHEET 7 A 7 LEU A 220 TYR A 221 1 O LEU A 220 N LEU A 164 LINK OG1 THR A 14 S1G GSP A 401 1555 1555 1.57 SITE 1 AC1 18 GLY A 10 SER A 11 GLY A 12 LYS A 13 SITE 2 AC1 18 THR A 14 THR A 15 ASP A 36 ASP A 101 SITE 3 AC1 18 GLY A 104 ASN A 165 LYS A 166 ASP A 168 SITE 4 AC1 18 LEU A 169 SER A 223 ALA A 224 HOH A 502 SITE 5 AC1 18 HOH A 506 HOH A 512 CRYST1 60.170 60.170 115.890 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016620 0.009595 0.000000 0.00000 SCALE2 0.000000 0.019191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008629 0.00000