HEADER HYDROLASE 03-FEB-05 1YR8 TITLE PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GTP BOUND FORM FROM PYROCOCCUS TITLE 2 ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP(GTP)BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-248; COMPND 5 SYNONYM: PAB0955 GENE PRODUCT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PAB0955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCRT7/NT-TOPO KEYWDS GTP BINDING PROTEIN, GTPASE, P-LOOP, ROSSMANN FOLD, GTP FORM, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,P.CARPENTIER,J.ARMENGAUD,D.HOUSSET REVDAT 7 25-OCT-23 1YR8 1 REMARK SEQADV REVDAT 6 11-OCT-17 1YR8 1 REMARK REVDAT 5 12-NOV-14 1YR8 1 KEYWDS REVDAT 4 13-JUL-11 1YR8 1 VERSN REVDAT 3 09-MAR-11 1YR8 1 JRNL AUTHOR REMARK REVDAT 2 24-FEB-09 1YR8 1 VERSN REVDAT 1 14-FEB-06 1YR8 0 JRNL AUTH S.GRAS,V.CHAUMONT,B.FERNANDEZ,P.CARPENTIER, JRNL AUTH 2 F.CHARRIER-SAVOURNIN,S.SCHMITT,C.PINEAU,D.FLAMENT,A.HECKER, JRNL AUTH 3 P.FORTERRE,J.ARMENGAUD,D.HOUSSET JRNL TITL STRUCTURAL INSIGHTS INTO A NEW HOMODIMERIC SELF-ACTIVATED JRNL TITL 2 GTPASE FAMILY. JRNL REF EMBO REP. V. 8 569 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17468740 JRNL DOI 10.1038/SJ.EMBOR.7400958 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GRAS,B.FERNANDEZ,V.CHAUMONT,P.CARPENTIER,J.ARMENGAUD, REMARK 1 AUTH 2 D.HOUSSET REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE PAB0955 GENE PRODUCT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 208 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 DOI 10.1107/S1744309105000035 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63000 REMARK 3 B22 (A**2) : 3.63000 REMARK 3 B33 (A**2) : -5.45000 REMARK 3 B12 (A**2) : 1.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.645 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2099 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2849 ; 1.192 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;39.065 ;24.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;19.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1568 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 968 ; 0.263 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1391 ; 0.333 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.310 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.257 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.628 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 0.938 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2005 ; 1.653 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 868 ; 1.123 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 844 ; 1.698 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10088 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 20.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 7.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YR6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG4000, 0.1M AMMONIUM ACETATE, REMARK 280 0.1M TRI-SODIUM CITRATE DIHYDRATE, 20MM DTT, 10MM EDTA, 0.65MM REMARK 280 GTP, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.94667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.94667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE TWO REMARK 300 FOLD AXIS : -X, -X +Y, -Z+2/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.89333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 487 REMARK 465 ARG A 488 REMARK 465 GLY A 489 REMARK 465 SER A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 GLY A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 THR A 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N7 GTP A 401 O HOH A 505 2.00 REMARK 500 OE1 GLU A 231 O HOH A 506 2.01 REMARK 500 O LYS A 40 NH1 ARG A 51 2.03 REMARK 500 NH2 ARG A 22 O PRO A 43 2.04 REMARK 500 OD1 ASN A 165 O HOH A 505 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 509 O HOH A 509 6555 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 500 120.67 25.70 REMARK 500 MET A 1 125.94 175.02 REMARK 500 ALA A 9 107.04 -18.67 REMARK 500 GLU A 25 -5.93 -56.22 REMARK 500 LYS A 40 -90.70 -64.70 REMARK 500 ARG A 61 23.46 -60.48 REMARK 500 MET A 106 -31.44 -33.45 REMARK 500 TYR A 124 59.81 38.26 REMARK 500 PRO A 133 1.48 -59.71 REMARK 500 ILE A 135 -2.77 -53.32 REMARK 500 ASP A 186 21.07 -75.14 REMARK 500 LEU A 192 42.61 -97.01 REMARK 500 LEU A 194 25.78 -74.52 REMARK 500 MET A 198 -46.35 -7.98 REMARK 500 LEU A 201 -56.25 -134.81 REMARK 500 ALA A 203 -26.35 -37.22 REMARK 500 MET A 206 -87.03 -64.93 REMARK 500 CYS A 207 10.62 -69.29 REMARK 500 MET A 210 -32.31 -28.29 REMARK 500 VAL A 213 -56.87 -169.60 REMARK 500 PRO A 216 174.30 -50.78 REMARK 500 CYS A 242 -73.28 -73.97 REMARK 500 THR A 243 63.45 -69.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YR6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1YR7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GTP-GAMMA-S BOUND FORM REMARK 900 RELATED ID: 1YR9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND PO4 BOUND FORM REMARK 900 RELATED ID: 1YRA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP BOUND FORM REMARK 900 RELATED ID: 1YRB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND MG BOUND FORM REMARK 900 RELATED ID: 2OXR RELATED DB: PDB DBREF 1YR8 A 1 248 GB 5458856 CAB50343 30 277 SEQADV 1YR8 MET A 487 GB 5458856 EXPRESSION TAG SEQADV 1YR8 ARG A 488 GB 5458856 EXPRESSION TAG SEQADV 1YR8 GLY A 489 GB 5458856 EXPRESSION TAG SEQADV 1YR8 SER A 490 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 491 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 492 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 493 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 494 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 495 GB 5458856 EXPRESSION TAG SEQADV 1YR8 HIS A 496 GB 5458856 EXPRESSION TAG SEQADV 1YR8 GLY A 497 GB 5458856 EXPRESSION TAG SEQADV 1YR8 MET A 498 GB 5458856 EXPRESSION TAG SEQADV 1YR8 ALA A 499 GB 5458856 EXPRESSION TAG SEQADV 1YR8 SER A 500 GB 5458856 EXPRESSION TAG SEQRES 1 A 262 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 262 SER MET ILE VAL VAL PHE VAL GLY THR ALA GLY SER GLY SEQRES 3 A 262 LYS THR THR LEU THR GLY GLU PHE GLY ARG TYR LEU GLU SEQRES 4 A 262 ASP ASN TYR LYS VAL ALA TYR VAL ASN LEU ASP THR GLY SEQRES 5 A 262 VAL LYS GLU LEU PRO TYR GLU PRO SER ILE ASP VAL ARG SEQRES 6 A 262 GLU PHE VAL THR VAL GLU GLU ILE MET ARG GLU GLY TYR SEQRES 7 A 262 GLY PRO ASN GLY ALA ILE VAL GLU SER TYR ASP ARG LEU SEQRES 8 A 262 MET GLU LYS PHE ASN GLU TYR LEU ASN LYS ILE LEU ARG SEQRES 9 A 262 LEU GLU LYS GLU ASN ASP TYR VAL LEU ILE ASP THR PRO SEQRES 10 A 262 GLY GLN MET GLU THR PHE LEU PHE HIS GLU PHE GLY VAL SEQRES 11 A 262 ARG LEU MET GLU ASN LEU PRO TYR PRO LEU VAL VAL TYR SEQRES 12 A 262 ILE SER ASP PRO GLU ILE LEU LYS LYS PRO ASN ASP TYR SEQRES 13 A 262 CYS PHE VAL ARG PHE PHE ALA LEU LEU ILE ASP LEU ARG SEQRES 14 A 262 LEU GLY ALA THR THR ILE PRO ALA LEU ASN LYS VAL ASP SEQRES 15 A 262 LEU LEU SER GLU GLU GLU LYS GLU ARG HIS ARG LYS TYR SEQRES 16 A 262 PHE GLU ASP ILE ASP TYR LEU THR ALA ARG LEU LYS LEU SEQRES 17 A 262 ASP PRO SER MET GLN GLY LEU MET ALA TYR LYS MET CYS SEQRES 18 A 262 SER MET MET THR GLU VAL LEU PRO PRO VAL ARG VAL LEU SEQRES 19 A 262 TYR LEU SER ALA LYS THR ARG GLU GLY PHE GLU ASP LEU SEQRES 20 A 262 GLU THR LEU ALA TYR GLU HIS TYR CYS THR CYS GLY ASP SEQRES 21 A 262 LEU THR HET GTP A 401 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 HOH *18(H2 O) HELIX 1 1 GLY A 12 GLU A 25 1 14 HELIX 2 2 THR A 55 ARG A 61 1 7 HELIX 3 3 GLY A 65 MET A 78 1 14 HELIX 4 4 LYS A 80 LYS A 93 1 14 HELIX 5 5 MET A 106 PHE A 111 1 6 HELIX 6 6 HIS A 112 GLU A 120 1 9 HELIX 7 7 ASP A 132 LEU A 136 5 5 HELIX 8 8 LYS A 138 GLY A 157 1 20 HELIX 9 9 LYS A 166 LEU A 170 5 5 HELIX 10 10 SER A 171 ASP A 184 1 14 HELIX 11 11 ASP A 184 THR A 189 1 6 HELIX 12 12 SER A 197 MET A 210 1 14 HELIX 13 13 GLY A 229 THR A 243 1 15 SHEET 1 A 7 ILE A 48 ASP A 49 0 SHEET 2 A 7 VAL A 30 ASN A 34 1 N ASN A 34 O ILE A 48 SHEET 3 A 7 TYR A 97 ASP A 101 1 O LEU A 99 N ALA A 31 SHEET 4 A 7 ILE A 2 GLY A 7 1 N VAL A 3 O ILE A 100 SHEET 5 A 7 LEU A 126 SER A 131 1 O LEU A 126 N VAL A 4 SHEET 6 A 7 THR A 160 LEU A 164 1 O ILE A 161 N VAL A 127 SHEET 7 A 7 LEU A 220 TYR A 221 1 O LEU A 220 N LEU A 164 SSBOND 1 CYS A 143 CYS A 207 1555 1555 2.03 SITE 1 AC1 14 ALA A 9 GLY A 10 SER A 11 GLY A 12 SITE 2 AC1 14 LYS A 13 THR A 14 THR A 15 LYS A 166 SITE 3 AC1 14 ASP A 168 LEU A 169 SER A 223 ALA A 224 SITE 4 AC1 14 LYS A 225 HOH A 505 CRYST1 60.710 60.710 116.840 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016472 0.009510 0.000000 0.00000 SCALE2 0.000000 0.019020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008559 0.00000