HEADER HYDROLASE 03-FEB-05 1YRA TITLE PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GDP BOUND FORM FROM PYROCOCCUS TITLE 2 ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP(GTP)BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-248; COMPND 5 SYNONYM: PAB0955 GENE PRODUCT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PAB0955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCRT7/NT-TOPO KEYWDS GTP BINDING PROTEIN, GTPASE, P-LOOP, ROSSMANN FOLD, GDP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,P.CARPENTIER,J.ARMENGAUD,D.HOUSSET REVDAT 6 25-OCT-23 1YRA 1 REMARK SEQADV REVDAT 5 11-OCT-17 1YRA 1 REMARK REVDAT 4 12-NOV-14 1YRA 1 KEYWDS REVDAT 3 09-MAR-11 1YRA 1 JRNL AUTHOR REMARK REVDAT 2 24-FEB-09 1YRA 1 VERSN REVDAT 1 14-FEB-06 1YRA 0 JRNL AUTH S.GRAS,V.CHAUMONT,B.FERNANDEZ,P.CARPENTIER, JRNL AUTH 2 F.CHARRIER-SAVOURNIN,S.SCHMITT,C.PINEAU,D.FLAMENT,A.HECKER, JRNL AUTH 3 P.FORTERRE,J.ARMENGAUD,D.HOUSSET JRNL TITL STRUCTURAL INSIGHTS INTO A NEW HOMODIMERIC SELF-ACTIVATED JRNL TITL 2 GTPASE FAMILY. JRNL REF EMBO REP. V. 8 569 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17468740 JRNL DOI 10.1038/SJ.EMBOR.7400958 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GRAS,B.FERNANDEZ,V.CHAUMONT,P.CARPENTIER,J.ARMENGAUD, REMARK 1 AUTH 2 D.HOUSSET REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE PAB0955 GENE PRODUCT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 208 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 DOI 10.1107/S1744309105000035 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 25808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.332 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.835 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4410 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5972 ; 1.294 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 5.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;31.466 ;23.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 781 ;18.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3321 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2217 ; 0.248 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2990 ; 0.330 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 385 ; 0.235 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.227 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.306 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2679 ; 1.110 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4208 ; 1.898 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 1.609 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 2.301 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.350 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 12.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 FOR SHELL : 3.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YR6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M TRI-SODIUM CITRATE DIHYDRATE, 20MM DTT, 0.65MM GDP, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.47500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER, WHICH IS PRESENT IN THE REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 247 REMARK 465 THR A 248 REMARK 465 THR B 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 191 O HOH B 554 1.93 REMARK 500 OG SER A 47 O HOH A 552 1.98 REMARK 500 OH TYR B 84 O HOH B 545 2.04 REMARK 500 O HOH B 568 O HOH B 574 2.09 REMARK 500 OE1 GLU B 120 O HOH B 553 2.09 REMARK 500 OD2 ASP A 36 O HOH A 531 2.16 REMARK 500 O HOH B 503 O HOH B 512 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 175 OE2 GLU B 173 1556 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 184 79.12 -108.35 REMARK 500 CYS A 207 45.08 -68.00 REMARK 500 MET A 210 -162.62 141.15 REMARK 500 THR A 211 -103.11 34.69 REMARK 500 VAL A 213 135.50 70.43 REMARK 500 LEU A 214 17.57 108.94 REMARK 500 MET B 498 113.19 -174.21 REMARK 500 THR B 8 153.38 -48.38 REMARK 500 ILE B 185 52.21 -96.11 REMARK 500 PRO B 215 95.88 -54.50 REMARK 500 PRO B 216 119.75 -33.54 REMARK 500 ARG B 227 -1.33 82.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YR6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1YR7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GTP-GAMMA-S BOUND FORM REMARK 900 RELATED ID: 1YR8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GTP BOUND FORM REMARK 900 RELATED ID: 1YR9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND PO4 BOUND FORM REMARK 900 RELATED ID: 1YRB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN GDP AND MG BOUND FORM REMARK 900 RELATED ID: 2OXR RELATED DB: PDB DBREF 1YRA A 1 248 GB 5458856 CAB50343 30 277 DBREF 1YRA B 1 248 GB 5458856 CAB50343 30 277 SEQADV 1YRA MET A 487 GB 5458856 EXPRESSION TAG SEQADV 1YRA ARG A 488 GB 5458856 EXPRESSION TAG SEQADV 1YRA GLY A 489 GB 5458856 EXPRESSION TAG SEQADV 1YRA SER A 490 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 491 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 492 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 493 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 494 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 495 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS A 496 GB 5458856 EXPRESSION TAG SEQADV 1YRA GLY A 497 GB 5458856 EXPRESSION TAG SEQADV 1YRA MET A 498 GB 5458856 EXPRESSION TAG SEQADV 1YRA ALA A 499 GB 5458856 EXPRESSION TAG SEQADV 1YRA SER A 500 GB 5458856 EXPRESSION TAG SEQADV 1YRA MET B 487 GB 5458856 EXPRESSION TAG SEQADV 1YRA ARG B 488 GB 5458856 EXPRESSION TAG SEQADV 1YRA GLY B 489 GB 5458856 EXPRESSION TAG SEQADV 1YRA SER B 490 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 491 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 492 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 493 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 494 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 495 GB 5458856 EXPRESSION TAG SEQADV 1YRA HIS B 496 GB 5458856 EXPRESSION TAG SEQADV 1YRA GLY B 497 GB 5458856 EXPRESSION TAG SEQADV 1YRA MET B 498 GB 5458856 EXPRESSION TAG SEQADV 1YRA ALA B 499 GB 5458856 EXPRESSION TAG SEQADV 1YRA SER B 500 GB 5458856 EXPRESSION TAG SEQRES 1 A 262 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 262 SER MET ILE VAL VAL PHE VAL GLY THR ALA GLY SER GLY SEQRES 3 A 262 LYS THR THR LEU THR GLY GLU PHE GLY ARG TYR LEU GLU SEQRES 4 A 262 ASP ASN TYR LYS VAL ALA TYR VAL ASN LEU ASP THR GLY SEQRES 5 A 262 VAL LYS GLU LEU PRO TYR GLU PRO SER ILE ASP VAL ARG SEQRES 6 A 262 GLU PHE VAL THR VAL GLU GLU ILE MET ARG GLU GLY TYR SEQRES 7 A 262 GLY PRO ASN GLY ALA ILE VAL GLU SER TYR ASP ARG LEU SEQRES 8 A 262 MET GLU LYS PHE ASN GLU TYR LEU ASN LYS ILE LEU ARG SEQRES 9 A 262 LEU GLU LYS GLU ASN ASP TYR VAL LEU ILE ASP THR PRO SEQRES 10 A 262 GLY GLN MET GLU THR PHE LEU PHE HIS GLU PHE GLY VAL SEQRES 11 A 262 ARG LEU MET GLU ASN LEU PRO TYR PRO LEU VAL VAL TYR SEQRES 12 A 262 ILE SER ASP PRO GLU ILE LEU LYS LYS PRO ASN ASP TYR SEQRES 13 A 262 CYS PHE VAL ARG PHE PHE ALA LEU LEU ILE ASP LEU ARG SEQRES 14 A 262 LEU GLY ALA THR THR ILE PRO ALA LEU ASN LYS VAL ASP SEQRES 15 A 262 LEU LEU SER GLU GLU GLU LYS GLU ARG HIS ARG LYS TYR SEQRES 16 A 262 PHE GLU ASP ILE ASP TYR LEU THR ALA ARG LEU LYS LEU SEQRES 17 A 262 ASP PRO SER MET GLN GLY LEU MET ALA TYR LYS MET CYS SEQRES 18 A 262 SER MET MET THR GLU VAL LEU PRO PRO VAL ARG VAL LEU SEQRES 19 A 262 TYR LEU SER ALA LYS THR ARG GLU GLY PHE GLU ASP LEU SEQRES 20 A 262 GLU THR LEU ALA TYR GLU HIS TYR CYS THR CYS GLY ASP SEQRES 21 A 262 LEU THR SEQRES 1 B 262 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 262 SER MET ILE VAL VAL PHE VAL GLY THR ALA GLY SER GLY SEQRES 3 B 262 LYS THR THR LEU THR GLY GLU PHE GLY ARG TYR LEU GLU SEQRES 4 B 262 ASP ASN TYR LYS VAL ALA TYR VAL ASN LEU ASP THR GLY SEQRES 5 B 262 VAL LYS GLU LEU PRO TYR GLU PRO SER ILE ASP VAL ARG SEQRES 6 B 262 GLU PHE VAL THR VAL GLU GLU ILE MET ARG GLU GLY TYR SEQRES 7 B 262 GLY PRO ASN GLY ALA ILE VAL GLU SER TYR ASP ARG LEU SEQRES 8 B 262 MET GLU LYS PHE ASN GLU TYR LEU ASN LYS ILE LEU ARG SEQRES 9 B 262 LEU GLU LYS GLU ASN ASP TYR VAL LEU ILE ASP THR PRO SEQRES 10 B 262 GLY GLN MET GLU THR PHE LEU PHE HIS GLU PHE GLY VAL SEQRES 11 B 262 ARG LEU MET GLU ASN LEU PRO TYR PRO LEU VAL VAL TYR SEQRES 12 B 262 ILE SER ASP PRO GLU ILE LEU LYS LYS PRO ASN ASP TYR SEQRES 13 B 262 CYS PHE VAL ARG PHE PHE ALA LEU LEU ILE ASP LEU ARG SEQRES 14 B 262 LEU GLY ALA THR THR ILE PRO ALA LEU ASN LYS VAL ASP SEQRES 15 B 262 LEU LEU SER GLU GLU GLU LYS GLU ARG HIS ARG LYS TYR SEQRES 16 B 262 PHE GLU ASP ILE ASP TYR LEU THR ALA ARG LEU LYS LEU SEQRES 17 B 262 ASP PRO SER MET GLN GLY LEU MET ALA TYR LYS MET CYS SEQRES 18 B 262 SER MET MET THR GLU VAL LEU PRO PRO VAL ARG VAL LEU SEQRES 19 B 262 TYR LEU SER ALA LYS THR ARG GLU GLY PHE GLU ASP LEU SEQRES 20 B 262 GLU THR LEU ALA TYR GLU HIS TYR CYS THR CYS GLY ASP SEQRES 21 B 262 LEU THR HET GDP A 401 28 HET GDP B 402 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *169(H2 O) HELIX 1 1 GLY A 12 ASP A 26 1 15 HELIX 2 2 ARG A 51 PHE A 53 5 3 HELIX 3 3 THR A 55 GLU A 62 1 8 HELIX 4 4 GLY A 65 GLU A 79 1 15 HELIX 5 5 LYS A 80 ASN A 95 1 16 HELIX 6 6 GLN A 105 HIS A 112 1 8 HELIX 7 7 HIS A 112 GLU A 120 1 9 HELIX 8 8 ASP A 132 LEU A 136 5 5 HELIX 9 9 LYS A 138 GLY A 157 1 20 HELIX 10 10 LYS A 166 LEU A 170 5 5 HELIX 11 11 SER A 171 ASP A 184 1 14 HELIX 12 12 ASP A 184 ASP A 195 1 12 HELIX 13 13 SER A 197 CYS A 207 1 11 HELIX 14 14 GLY A 229 CYS A 244 1 16 HELIX 15 15 GLY B 12 ASP B 26 1 15 HELIX 16 16 ARG B 51 PHE B 53 5 3 HELIX 17 17 THR B 55 ARG B 61 1 7 HELIX 18 18 GLY B 65 MET B 78 1 14 HELIX 19 19 LYS B 80 ASN B 95 1 16 HELIX 20 20 GLN B 105 HIS B 112 1 8 HELIX 21 21 HIS B 112 LEU B 122 1 11 HELIX 22 22 ASP B 132 LEU B 136 5 5 HELIX 23 23 LYS B 138 GLY B 157 1 20 HELIX 24 24 LYS B 166 LEU B 170 5 5 HELIX 25 25 SER B 171 GLU B 183 1 13 HELIX 26 26 ASP B 186 LEU B 194 1 9 HELIX 27 27 SER B 197 LEU B 214 1 18 HELIX 28 28 GLY B 229 LEU B 247 1 19 SHEET 1 A 7 ILE A 48 ASP A 49 0 SHEET 2 A 7 VAL A 30 ASN A 34 1 N ASN A 34 O ILE A 48 SHEET 3 A 7 TYR A 97 ASP A 101 1 O ASP A 101 N VAL A 33 SHEET 4 A 7 MET A 1 VAL A 6 1 N VAL A 3 O ILE A 100 SHEET 5 A 7 LEU A 126 SER A 131 1 O VAL A 128 N VAL A 4 SHEET 6 A 7 THR A 160 LEU A 164 1 O ILE A 161 N VAL A 127 SHEET 7 A 7 LEU A 220 TYR A 221 1 O LEU A 220 N LEU A 164 SHEET 1 B 7 ILE B 48 ASP B 49 0 SHEET 2 B 7 VAL B 30 ASN B 34 1 N ASN B 34 O ILE B 48 SHEET 3 B 7 TYR B 97 ASP B 101 1 O ASP B 101 N VAL B 33 SHEET 4 B 7 MET B 1 VAL B 6 1 N VAL B 3 O ILE B 100 SHEET 5 B 7 LEU B 126 SER B 131 1 O VAL B 128 N VAL B 4 SHEET 6 B 7 THR B 160 LEU B 164 1 O ALA B 163 N TYR B 129 SHEET 7 B 7 LEU B 220 TYR B 221 1 O LEU B 220 N LEU B 164 SITE 1 AC1 12 GLY A 10 GLY A 12 LYS A 13 THR A 14 SITE 2 AC1 12 THR A 15 ASN A 165 LYS A 166 ASP A 168 SITE 3 AC1 12 SER A 223 ALA A 224 LYS A 225 HOH A 581 SITE 1 AC2 15 GLY B 10 SER B 11 GLY B 12 LYS B 13 SITE 2 AC2 15 THR B 14 THR B 15 ASN B 165 LYS B 166 SITE 3 AC2 15 ASP B 168 LEU B 169 SER B 223 ALA B 224 SITE 4 AC2 15 LYS B 225 HOH B 561 HOH B 568 CRYST1 59.190 84.950 60.200 90.00 95.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016895 0.000000 0.001498 0.00000 SCALE2 0.000000 0.011772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016676 0.00000