HEADER OXIDOREDUCTASE 07-FEB-05 1YS4 TITLE STRUCTURE OF ASPARTATE-SEMIALDEHYDE DEHYDROGENASE FROM METHANOCOCCUS TITLE 2 JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASA DEHYDROGENASE, ASADH; COMPND 5 EC: 1.2.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: ASD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS OXIDOREDUCTASE, ASADH EXPDTA X-RAY DIFFRACTION AUTHOR C.R.FAEHNLE,J.F.OHREN,R.E.VIOLA REVDAT 4 30-OCT-24 1YS4 1 REMARK SEQADV LINK REVDAT 3 29-APR-15 1YS4 1 HETSYN VERSN REVDAT 2 24-FEB-09 1YS4 1 VERSN REVDAT 1 01-NOV-05 1YS4 0 JRNL AUTH C.R.FAEHNLE,J.F.OHREN,R.E.VIOLA JRNL TITL A NEW BRANCH IN THE FAMILY: STRUCTURE OF JRNL TITL 2 ASPARTATE-BETA-SEMIALDEHYDE DEHYDROGENASE FROM METHANOCOCCUS JRNL TITL 3 JANNASCHII JRNL REF J.MOL.BIOL. V. 353 1055 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16225889 JRNL DOI 10.1016/J.JMB.2005.09.027 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 58938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000031868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9743, 0.9797, 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 148.97850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.62700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.62700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 223.46775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.62700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.62700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.48925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.62700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.62700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 223.46775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.62700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.62700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.48925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 148.97850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMETRIC UNIT IS BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 297.95700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 GLU B 5 REMARK 465 LYS B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 940 O HOH A 986 2.19 REMARK 500 O HOH B 946 O HOH B 1055 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 131 48.18 -143.52 REMARK 500 PRO A 205 33.21 -83.32 REMARK 500 ASP A 275 57.33 -160.89 REMARK 500 PHE A 323 -151.17 -91.41 REMARK 500 ILE A 335 -87.76 -93.46 REMARK 500 ALA A 338 -86.55 -150.87 REMARK 500 LYS A 352 -36.28 -132.37 REMARK 500 ALA B 41 -156.18 -152.60 REMARK 500 PRO B 205 36.89 -82.85 REMARK 500 ASN B 209 -2.19 71.13 REMARK 500 ASP B 275 61.91 -159.81 REMARK 500 PHE B 323 -149.71 -91.61 REMARK 500 ILE B 335 -83.74 -95.99 REMARK 500 ALA B 338 -88.11 -154.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BRM RELATED DB: PDB REMARK 900 ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1NWC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPARTATE-SEMIALDEHYDE DEHYDROGENASE FROM REMARK 900 HAEMOPHILUS INFLUENZAE DBREF 1YS4 A 1 354 UNP Q57658 DHAS_METJA 1 354 DBREF 1YS4 B 1 354 UNP Q57658 DHAS_METJA 1 354 SEQADV 1YS4 MSE A 7 UNP Q57658 MET 7 MODIFIED RESIDUE SEQADV 1YS4 MSE A 33 UNP Q57658 MET 33 MODIFIED RESIDUE SEQADV 1YS4 MSE A 69 UNP Q57658 MET 69 MODIFIED RESIDUE SEQADV 1YS4 MSE A 119 UNP Q57658 MET 119 MODIFIED RESIDUE SEQADV 1YS4 MSE A 170 UNP Q57658 MET 170 MODIFIED RESIDUE SEQADV 1YS4 MSE A 183 UNP Q57658 MET 183 MODIFIED RESIDUE SEQADV 1YS4 MSE A 197 UNP Q57658 MET 197 MODIFIED RESIDUE SEQADV 1YS4 MSE A 214 UNP Q57658 MET 214 MODIFIED RESIDUE SEQADV 1YS4 MSE A 271 UNP Q57658 MET 271 MODIFIED RESIDUE SEQADV 1YS4 MSE A 310 UNP Q57658 MET 310 MODIFIED RESIDUE SEQADV 1YS4 MSE B 7 UNP Q57658 MET 7 MODIFIED RESIDUE SEQADV 1YS4 MSE B 33 UNP Q57658 MET 33 MODIFIED RESIDUE SEQADV 1YS4 MSE B 69 UNP Q57658 MET 69 MODIFIED RESIDUE SEQADV 1YS4 MSE B 119 UNP Q57658 MET 119 MODIFIED RESIDUE SEQADV 1YS4 MSE B 170 UNP Q57658 MET 170 MODIFIED RESIDUE SEQADV 1YS4 MSE B 183 UNP Q57658 MET 183 MODIFIED RESIDUE SEQADV 1YS4 MSE B 197 UNP Q57658 MET 197 MODIFIED RESIDUE SEQADV 1YS4 MSE B 214 UNP Q57658 MET 214 MODIFIED RESIDUE SEQADV 1YS4 MSE B 271 UNP Q57658 MET 271 MODIFIED RESIDUE SEQADV 1YS4 MSE B 310 UNP Q57658 MET 310 MODIFIED RESIDUE SEQRES 1 A 354 MET SER LYS GLY GLU LYS MSE LYS ILE LYS VAL GLY VAL SEQRES 2 A 354 LEU GLY ALA THR GLY SER VAL GLY GLN ARG PHE VAL GLN SEQRES 3 A 354 LEU LEU ALA ASP HIS PRO MSE PHE GLU LEU THR ALA LEU SEQRES 4 A 354 ALA ALA SER GLU ARG SER ALA GLY LYS LYS TYR LYS ASP SEQRES 5 A 354 ALA CYS TYR TRP PHE GLN ASP ARG ASP ILE PRO GLU ASN SEQRES 6 A 354 ILE LYS ASP MSE VAL VAL ILE PRO THR ASP PRO LYS HIS SEQRES 7 A 354 GLU GLU PHE GLU ASP VAL ASP ILE VAL PHE SER ALA LEU SEQRES 8 A 354 PRO SER ASP LEU ALA LYS LYS PHE GLU PRO GLU PHE ALA SEQRES 9 A 354 LYS GLU GLY LYS LEU ILE PHE SER ASN ALA SER ALA TYR SEQRES 10 A 354 ARG MSE GLU GLU ASP VAL PRO LEU VAL ILE PRO GLU VAL SEQRES 11 A 354 ASN ALA ASP HIS LEU GLU LEU ILE GLU ILE GLN ARG GLU SEQRES 12 A 354 LYS ARG GLY TRP ASP GLY ALA ILE ILE THR ASN PRO ASN SEQRES 13 A 354 CYS SER THR ILE CYS ALA VAL ILE THR LEU LYS PRO ILE SEQRES 14 A 354 MSE ASP LYS PHE GLY LEU GLU ALA VAL PHE ILE ALA THR SEQRES 15 A 354 MSE GLN ALA VAL SER GLY ALA GLY TYR ASN GLY VAL PRO SEQRES 16 A 354 SER MSE ALA ILE LEU ASP ASN LEU ILE PRO PHE ILE LYS SEQRES 17 A 354 ASN GLU GLU GLU LYS MSE GLN THR GLU SER LEU LYS LEU SEQRES 18 A 354 LEU GLY THR LEU LYS ASP GLY LYS VAL GLU LEU ALA ASN SEQRES 19 A 354 PHE LYS ILE SER ALA SER CYS ASN ARG VAL ALA VAL ILE SEQRES 20 A 354 ASP GLY HIS THR GLU SER ILE PHE VAL LYS THR LYS GLU SEQRES 21 A 354 GLY ALA GLU PRO GLU GLU ILE LYS GLU VAL MSE ASP LYS SEQRES 22 A 354 PHE ASP PRO LEU LYS ASP LEU ASN LEU PRO THR TYR ALA SEQRES 23 A 354 LYS PRO ILE VAL ILE ARG GLU GLU ILE ASP ARG PRO GLN SEQRES 24 A 354 PRO ARG LEU ASP ARG ASN GLU GLY ASN GLY MSE SER ILE SEQRES 25 A 354 VAL VAL GLY ARG ILE ARG LYS ASP PRO ILE PHE ASP VAL SEQRES 26 A 354 LYS TYR THR ALA LEU GLU HIS ASN THR ILE ARG GLY ALA SEQRES 27 A 354 ALA GLY ALA SER VAL LEU ASN ALA GLU TYR PHE VAL LYS SEQRES 28 A 354 LYS TYR ILE SEQRES 1 B 354 MET SER LYS GLY GLU LYS MSE LYS ILE LYS VAL GLY VAL SEQRES 2 B 354 LEU GLY ALA THR GLY SER VAL GLY GLN ARG PHE VAL GLN SEQRES 3 B 354 LEU LEU ALA ASP HIS PRO MSE PHE GLU LEU THR ALA LEU SEQRES 4 B 354 ALA ALA SER GLU ARG SER ALA GLY LYS LYS TYR LYS ASP SEQRES 5 B 354 ALA CYS TYR TRP PHE GLN ASP ARG ASP ILE PRO GLU ASN SEQRES 6 B 354 ILE LYS ASP MSE VAL VAL ILE PRO THR ASP PRO LYS HIS SEQRES 7 B 354 GLU GLU PHE GLU ASP VAL ASP ILE VAL PHE SER ALA LEU SEQRES 8 B 354 PRO SER ASP LEU ALA LYS LYS PHE GLU PRO GLU PHE ALA SEQRES 9 B 354 LYS GLU GLY LYS LEU ILE PHE SER ASN ALA SER ALA TYR SEQRES 10 B 354 ARG MSE GLU GLU ASP VAL PRO LEU VAL ILE PRO GLU VAL SEQRES 11 B 354 ASN ALA ASP HIS LEU GLU LEU ILE GLU ILE GLN ARG GLU SEQRES 12 B 354 LYS ARG GLY TRP ASP GLY ALA ILE ILE THR ASN PRO ASN SEQRES 13 B 354 CYS SER THR ILE CYS ALA VAL ILE THR LEU LYS PRO ILE SEQRES 14 B 354 MSE ASP LYS PHE GLY LEU GLU ALA VAL PHE ILE ALA THR SEQRES 15 B 354 MSE GLN ALA VAL SER GLY ALA GLY TYR ASN GLY VAL PRO SEQRES 16 B 354 SER MSE ALA ILE LEU ASP ASN LEU ILE PRO PHE ILE LYS SEQRES 17 B 354 ASN GLU GLU GLU LYS MSE GLN THR GLU SER LEU LYS LEU SEQRES 18 B 354 LEU GLY THR LEU LYS ASP GLY LYS VAL GLU LEU ALA ASN SEQRES 19 B 354 PHE LYS ILE SER ALA SER CYS ASN ARG VAL ALA VAL ILE SEQRES 20 B 354 ASP GLY HIS THR GLU SER ILE PHE VAL LYS THR LYS GLU SEQRES 21 B 354 GLY ALA GLU PRO GLU GLU ILE LYS GLU VAL MSE ASP LYS SEQRES 22 B 354 PHE ASP PRO LEU LYS ASP LEU ASN LEU PRO THR TYR ALA SEQRES 23 B 354 LYS PRO ILE VAL ILE ARG GLU GLU ILE ASP ARG PRO GLN SEQRES 24 B 354 PRO ARG LEU ASP ARG ASN GLU GLY ASN GLY MSE SER ILE SEQRES 25 B 354 VAL VAL GLY ARG ILE ARG LYS ASP PRO ILE PHE ASP VAL SEQRES 26 B 354 LYS TYR THR ALA LEU GLU HIS ASN THR ILE ARG GLY ALA SEQRES 27 B 354 ALA GLY ALA SER VAL LEU ASN ALA GLU TYR PHE VAL LYS SEQRES 28 B 354 LYS TYR ILE MODRES 1YS4 MSE A 7 MET SELENOMETHIONINE MODRES 1YS4 MSE A 33 MET SELENOMETHIONINE MODRES 1YS4 MSE A 69 MET SELENOMETHIONINE MODRES 1YS4 MSE A 119 MET SELENOMETHIONINE MODRES 1YS4 MSE A 170 MET SELENOMETHIONINE MODRES 1YS4 MSE A 183 MET SELENOMETHIONINE MODRES 1YS4 MSE A 197 MET SELENOMETHIONINE MODRES 1YS4 MSE A 214 MET SELENOMETHIONINE MODRES 1YS4 MSE A 271 MET SELENOMETHIONINE MODRES 1YS4 MSE A 310 MET SELENOMETHIONINE MODRES 1YS4 MSE B 7 MET SELENOMETHIONINE MODRES 1YS4 MSE B 33 MET SELENOMETHIONINE MODRES 1YS4 MSE B 69 MET SELENOMETHIONINE MODRES 1YS4 MSE B 119 MET SELENOMETHIONINE MODRES 1YS4 MSE B 170 MET SELENOMETHIONINE MODRES 1YS4 MSE B 183 MET SELENOMETHIONINE MODRES 1YS4 MSE B 197 MET SELENOMETHIONINE MODRES 1YS4 MSE B 214 MET SELENOMETHIONINE MODRES 1YS4 MSE B 271 MET SELENOMETHIONINE MODRES 1YS4 MSE B 310 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 33 8 HET MSE A 69 8 HET MSE A 119 8 HET MSE A 170 8 HET MSE A 183 8 HET MSE A 197 8 HET MSE A 214 8 HET MSE A 271 8 HET MSE A 310 8 HET MSE B 7 8 HET MSE B 33 8 HET MSE B 69 8 HET MSE B 119 8 HET MSE B 170 8 HET MSE B 183 8 HET MSE B 197 8 HET MSE B 214 8 HET MSE B 271 8 HET MSE B 310 8 HET NAP A 900 48 HET MLA A 903 7 HET MLA A 904 7 HET NAP B 901 48 HET MLA B 902 7 HET MLA B 905 7 HETNAM MSE SELENOMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MLA MALONIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 MLA 4(C3 H4 O4) FORMUL 9 HOH *429(H2 O) HELIX 1 1 GLY A 18 ALA A 29 1 12 HELIX 2 2 LYS A 49 CYS A 54 1 6 HELIX 3 3 HIS A 78 GLU A 82 5 5 HELIX 4 4 PRO A 92 GLU A 106 1 15 HELIX 5 5 ILE A 127 ALA A 132 1 6 HELIX 6 6 ASP A 133 LEU A 135 5 3 HELIX 7 7 GLU A 136 GLY A 146 1 11 HELIX 8 8 ASN A 156 GLY A 174 1 19 HELIX 9 9 VAL A 186 GLY A 190 5 5 HELIX 10 10 PRO A 195 LEU A 200 1 6 HELIX 11 11 ASN A 209 LEU A 222 1 14 HELIX 12 12 GLU A 263 PHE A 274 1 12 HELIX 13 13 GLN A 299 ARG A 304 1 6 HELIX 14 14 ASN A 305 MSE A 310 5 6 HELIX 15 15 ALA A 338 TYR A 353 1 16 HELIX 16 16 GLY B 18 ALA B 29 1 12 HELIX 17 17 LYS B 49 CYS B 54 1 6 HELIX 18 18 PRO B 63 ASP B 68 1 6 HELIX 19 19 PRO B 92 GLU B 106 1 15 HELIX 20 20 ILE B 127 ALA B 132 1 6 HELIX 21 21 ASP B 133 LEU B 135 5 3 HELIX 22 22 GLU B 136 GLY B 146 1 11 HELIX 23 23 ASN B 156 GLY B 174 1 19 HELIX 24 24 VAL B 186 GLY B 190 5 5 HELIX 25 25 PRO B 195 LEU B 200 1 6 HELIX 26 26 ASN B 209 LEU B 222 1 14 HELIX 27 27 GLU B 263 PHE B 274 1 12 HELIX 28 28 GLN B 299 ARG B 304 1 6 HELIX 29 29 ASN B 305 MSE B 310 5 6 HELIX 30 30 ALA B 338 TYR B 353 1 16 SHEET 1 A 6 ILE A 72 PRO A 73 0 SHEET 2 A 6 PHE A 34 ALA A 41 1 N LEU A 39 O ILE A 72 SHEET 3 A 6 ILE A 9 LEU A 14 1 N VAL A 13 O ALA A 40 SHEET 4 A 6 ILE A 86 SER A 89 1 O PHE A 88 N LEU A 14 SHEET 5 A 6 LEU A 109 SER A 112 1 O LEU A 109 N VAL A 87 SHEET 6 A 6 ALA A 150 THR A 153 1 O ILE A 152 N ILE A 110 SHEET 1 B 6 LYS A 236 SER A 240 0 SHEET 2 B 6 ALA A 177 MSE A 183 1 N VAL A 178 O SER A 238 SHEET 3 B 6 HIS A 250 LYS A 257 -1 O SER A 253 N ALA A 181 SHEET 4 B 6 VAL A 325 GLU A 331 -1 O VAL A 325 N VAL A 256 SHEET 5 B 6 ILE A 312 LYS A 319 -1 N VAL A 313 O LEU A 330 SHEET 6 B 6 ILE A 289 ILE A 291 1 N VAL A 290 O ILE A 312 SHEET 1 C 2 THR A 224 LYS A 226 0 SHEET 2 C 2 LYS A 229 GLU A 231 -1 O LYS A 229 N LYS A 226 SHEET 1 D 6 ILE B 72 PRO B 73 0 SHEET 2 D 6 PHE B 34 ALA B 41 1 N LEU B 39 O ILE B 72 SHEET 3 D 6 ILE B 9 LEU B 14 1 N VAL B 11 O GLU B 35 SHEET 4 D 6 ILE B 86 SER B 89 1 O PHE B 88 N LEU B 14 SHEET 5 D 6 LEU B 109 SER B 112 1 O LEU B 109 N VAL B 87 SHEET 6 D 6 ALA B 150 THR B 153 1 O ALA B 150 N ILE B 110 SHEET 1 E 6 LYS B 236 SER B 240 0 SHEET 2 E 6 ALA B 177 MSE B 183 1 N THR B 182 O SER B 240 SHEET 3 E 6 HIS B 250 LYS B 257 -1 O THR B 251 N MSE B 183 SHEET 4 E 6 VAL B 325 GLU B 331 -1 O VAL B 325 N VAL B 256 SHEET 5 E 6 ILE B 312 LYS B 319 -1 N VAL B 313 O LEU B 330 SHEET 6 E 6 ILE B 289 ARG B 292 1 N ARG B 292 O VAL B 314 SHEET 1 F 2 THR B 224 LYS B 226 0 SHEET 2 F 2 LYS B 229 GLU B 231 -1 O GLU B 231 N THR B 224 LINK C MSE A 7 N LYS A 8 1555 1555 1.33 LINK C PRO A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N PHE A 34 1555 1555 1.33 LINK C ASP A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N VAL A 70 1555 1555 1.33 LINK C ARG A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N GLU A 120 1555 1555 1.33 LINK C ILE A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ASP A 171 1555 1555 1.33 LINK C THR A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N GLN A 184 1555 1555 1.33 LINK C SER A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N ALA A 198 1555 1555 1.33 LINK C LYS A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N GLN A 215 1555 1555 1.33 LINK C VAL A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N ASP A 272 1555 1555 1.33 LINK C GLY A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N SER A 311 1555 1555 1.33 LINK C MSE B 7 N LYS B 8 1555 1555 1.33 LINK C PRO B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N PHE B 34 1555 1555 1.33 LINK C ASP B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N VAL B 70 1555 1555 1.33 LINK C ARG B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N GLU B 120 1555 1555 1.33 LINK C ILE B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N ASP B 171 1555 1555 1.33 LINK C THR B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N GLN B 184 1555 1555 1.33 LINK C SER B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N ALA B 198 1555 1555 1.33 LINK C LYS B 213 N MSE B 214 1555 1555 1.33 LINK C MSE B 214 N GLN B 215 1555 1555 1.33 LINK C VAL B 270 N MSE B 271 1555 1555 1.33 LINK C MSE B 271 N ASP B 272 1555 1555 1.33 LINK C GLY B 309 N MSE B 310 1555 1555 1.33 LINK C MSE B 310 N SER B 311 1555 1555 1.33 CISPEP 1 ARG A 297 PRO A 298 0 3.16 CISPEP 2 ARG B 297 PRO B 298 0 4.10 SITE 1 AC1 27 GLY A 15 THR A 17 GLY A 18 SER A 19 SITE 2 AC1 27 VAL A 20 ALA A 41 SER A 42 SER A 45 SITE 3 AC1 27 THR A 74 PRO A 92 LEU A 95 ASN A 113 SITE 4 AC1 27 SER A 187 GLY A 188 ALA A 189 GLY A 190 SITE 5 AC1 27 ASN A 333 THR A 334 ALA A 338 MLA A 904 SITE 6 AC1 27 HOH A 934 HOH A 983 HOH A 986 HOH A 995 SITE 7 AC1 27 HOH A1025 HOH A1038 HOH A1068 SITE 1 AC2 30 GLY B 15 THR B 17 GLY B 18 SER B 19 SITE 2 AC2 30 VAL B 20 ALA B 41 SER B 42 SER B 45 SITE 3 AC2 30 THR B 74 ALA B 90 LEU B 91 PRO B 92 SITE 4 AC2 30 LEU B 95 ASN B 113 GLY B 188 GLY B 190 SITE 5 AC2 30 ASN B 333 THR B 334 ALA B 338 MLA B 902 SITE 6 AC2 30 HOH B 944 HOH B 986 HOH B 990 HOH B1011 SITE 7 AC2 30 HOH B1020 HOH B1051 HOH B1055 HOH B1092 SITE 8 AC2 30 HOH B1094 HOH B1121 SITE 1 AC3 8 ASN B 113 ARG B 118 ASN B 156 CYS B 157 SITE 2 AC3 8 LYS B 213 NAP B 901 HOH B 951 HOH B1020 SITE 1 AC4 10 PHE A 206 ILE A 207 ASN A 209 GLU A 210 SITE 2 AC4 10 GLU A 211 GLU A 212 HOH A 914 HOH A 964 SITE 3 AC4 10 HOH A1096 ARG B 316 SITE 1 AC5 9 SER A 115 ARG A 118 ASN A 156 CYS A 157 SITE 2 AC5 9 LYS A 213 NAP A 900 HOH A 922 HOH A 940 SITE 3 AC5 9 HOH A1025 SITE 1 AC6 12 ARG A 316 PHE B 206 ILE B 207 ASN B 209 SITE 2 AC6 12 GLU B 210 GLU B 211 GLU B 212 HOH B 918 SITE 3 AC6 12 HOH B 989 HOH B1053 HOH B1060 HOH B1066 CRYST1 95.254 95.254 297.957 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003400 0.00000 HETATM 1 N MSE A 7 29.528 47.491 110.516 1.00 45.11 N HETATM 2 CA MSE A 7 30.164 48.780 110.915 1.00 45.34 C HETATM 3 C MSE A 7 31.325 48.524 111.873 1.00 44.37 C HETATM 4 O MSE A 7 31.251 47.635 112.724 1.00 44.31 O HETATM 5 CB MSE A 7 29.119 49.710 111.534 1.00 45.21 C HETATM 6 CG MSE A 7 29.435 51.189 111.402 1.00 46.17 C HETATM 7 SE MSE A 7 27.852 52.291 111.037 1.00 48.00 SE HETATM 8 CE MSE A 7 26.859 52.013 112.698 1.00 46.78 C