HEADER TRANSCRIPTION REGULATOR 07-FEB-05 1YS7 TITLE CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR PROTEIN PRRA COMPLEXED TITLE 2 WITH MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN PRRA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RESPONSE REGULATOR PRRA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS RESPONSE REGULATOR, DNA BINDING DOMAIN, PHOSPHORYLATION, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT, XMTB, KEYWDS 3 STRUCTURAL GENOMICS, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR E.NOWAK,S.PANJIKAR,P.TUCKER,MYCOBACTERIUM TUBERCULOSIS STRUCTURAL AUTHOR 2 PROTEOMICS PROJECT (XMTB) REVDAT 6 25-OCT-23 1YS7 1 REMARK LINK REVDAT 5 28-DEC-16 1YS7 1 JRNL REVDAT 4 21-DEC-16 1YS7 1 TITLE REVDAT 3 13-JUL-11 1YS7 1 VERSN REVDAT 2 24-FEB-09 1YS7 1 VERSN REVDAT 1 07-FEB-06 1YS7 0 JRNL AUTH E.NOWAK,S.PANJIKAR,P.KONAREV,D.I.SVERGUN,P.A.TUCKER JRNL TITL THE STRUCTURAL BASIS OF SIGNAL TRANSDUCTION FOR THE RESPONSE JRNL TITL 2 REGULATOR PRRA FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 281 9659 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16434396 JRNL DOI 10.1074/JBC.M512004200 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 53033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3468 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4703 ; 1.838 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 7.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.378 ;22.432 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;14.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;21.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2568 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1658 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2413 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.026 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2282 ; 1.379 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3594 ; 2.264 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 4.683 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1109 ; 7.206 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 125 4 REMARK 3 1 B 7 B 125 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 883 ; 1.07 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 883 ; 1.84 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 136 A 233 4 REMARK 3 1 B 136 B 233 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 753 ; 0.52 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 753 ; 1.96 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR, BENT REMARK 200 MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YS6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, SODIUM CACODYLATE, GLYCEROL, REMARK 280 MAGNESIUM ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 ALA A 194 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 VAL B 5 REMARK 465 THR B 6 REMARK 465 GLY B 215 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 90 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 VAL A 91 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 VAL A 91 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP B 104 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 163 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 51 94.22 -35.63 REMARK 500 VAL A 63 -63.26 75.31 REMARK 500 VAL A 91 94.48 40.21 REMARK 500 ALA A 96 51.31 74.51 REMARK 500 GLU A 135 -111.38 -105.31 REMARK 500 THR A 176 -9.65 74.27 REMARK 500 VAL A 226 -56.07 -125.09 REMARK 500 VAL B 63 -65.11 75.88 REMARK 500 THR B 176 -11.63 68.21 REMARK 500 ALA B 213 -126.66 69.13 REMARK 500 VAL B 226 -53.08 -124.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 95 ALA A 96 50.77 REMARK 500 GLU B 212 ALA B 213 95.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD1 REMARK 620 2 ASP A 58 OD2 92.5 REMARK 620 3 ASN A 60 O 90.8 89.1 REMARK 620 4 HOH A4014 O 88.7 178.3 89.7 REMARK 620 5 HOH A4021 O 178.4 88.9 90.0 90.0 REMARK 620 6 HOH A4037 O 92.6 91.2 176.6 89.9 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD1 REMARK 620 2 ASP B 58 OD2 87.1 REMARK 620 3 ASN B 60 O 94.0 90.7 REMARK 620 4 HOH B3006 O 90.1 174.3 84.6 REMARK 620 5 HOH B3013 O 84.6 88.6 178.5 96.0 REMARK 620 6 HOH B3028 O 174.9 93.7 91.0 89.5 90.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YS3 RELATED DB: PDB REMARK 900 ATP BINDING DOMAIN OF PRRB REMARK 900 RELATED ID: 1YS6 RELATED DB: PDB REMARK 900 RESPONSE REGULATORY PROTEIN PRRA REMARK 900 RELATED ID: RV0903C RELATED DB: TARGETDB DBREF 1YS7 A 1 233 UNP Q10531 PRRA_MYCTU 1 233 DBREF 1YS7 B 1 233 UNP Q10531 PRRA_MYCTU 1 233 SEQRES 1 A 233 MET ASP THR GLY VAL THR SER PRO ARG VAL LEU VAL VAL SEQRES 2 A 233 ASP ASP ASP SER ASP VAL LEU ALA SER LEU GLU ARG GLY SEQRES 3 A 233 LEU ARG LEU SER GLY PHE GLU VAL ALA THR ALA VAL ASP SEQRES 4 A 233 GLY ALA GLU ALA LEU ARG SER ALA THR GLU ASN ARG PRO SEQRES 5 A 233 ASP ALA ILE VAL LEU ASP ILE ASN MET PRO VAL LEU ASP SEQRES 6 A 233 GLY VAL SER VAL VAL THR ALA LEU ARG ALA MET ASP ASN SEQRES 7 A 233 ASP VAL PRO VAL CYS VAL LEU SER ALA ARG SER SER VAL SEQRES 8 A 233 ASP ASP ARG VAL ALA GLY LEU GLU ALA GLY ALA ASP ASP SEQRES 9 A 233 TYR LEU VAL LYS PRO PHE VAL LEU ALA GLU LEU VAL ALA SEQRES 10 A 233 ARG VAL LYS ALA LEU LEU ARG ARG ARG GLY SER THR ALA SEQRES 11 A 233 THR SER SER SER GLU THR ILE THR VAL GLY PRO LEU GLU SEQRES 12 A 233 VAL ASP ILE PRO GLY ARG ARG ALA ARG VAL ASN GLY VAL SEQRES 13 A 233 ASP VAL ASP LEU THR LYS ARG GLU PHE ASP LEU LEU ALA SEQRES 14 A 233 VAL LEU ALA GLU HIS LYS THR ALA VAL LEU SER ARG ALA SEQRES 15 A 233 GLN LEU LEU GLU LEU VAL TRP GLY TYR ASP PHE ALA ALA SEQRES 16 A 233 ASP THR ASN VAL VAL ASP VAL PHE ILE GLY TYR LEU ARG SEQRES 17 A 233 ARG LYS LEU GLU ALA GLY GLY GLY PRO ARG LEU LEU HIS SEQRES 18 A 233 THR VAL ARG GLY VAL GLY PHE VAL LEU ARG MET GLN SEQRES 1 B 233 MET ASP THR GLY VAL THR SER PRO ARG VAL LEU VAL VAL SEQRES 2 B 233 ASP ASP ASP SER ASP VAL LEU ALA SER LEU GLU ARG GLY SEQRES 3 B 233 LEU ARG LEU SER GLY PHE GLU VAL ALA THR ALA VAL ASP SEQRES 4 B 233 GLY ALA GLU ALA LEU ARG SER ALA THR GLU ASN ARG PRO SEQRES 5 B 233 ASP ALA ILE VAL LEU ASP ILE ASN MET PRO VAL LEU ASP SEQRES 6 B 233 GLY VAL SER VAL VAL THR ALA LEU ARG ALA MET ASP ASN SEQRES 7 B 233 ASP VAL PRO VAL CYS VAL LEU SER ALA ARG SER SER VAL SEQRES 8 B 233 ASP ASP ARG VAL ALA GLY LEU GLU ALA GLY ALA ASP ASP SEQRES 9 B 233 TYR LEU VAL LYS PRO PHE VAL LEU ALA GLU LEU VAL ALA SEQRES 10 B 233 ARG VAL LYS ALA LEU LEU ARG ARG ARG GLY SER THR ALA SEQRES 11 B 233 THR SER SER SER GLU THR ILE THR VAL GLY PRO LEU GLU SEQRES 12 B 233 VAL ASP ILE PRO GLY ARG ARG ALA ARG VAL ASN GLY VAL SEQRES 13 B 233 ASP VAL ASP LEU THR LYS ARG GLU PHE ASP LEU LEU ALA SEQRES 14 B 233 VAL LEU ALA GLU HIS LYS THR ALA VAL LEU SER ARG ALA SEQRES 15 B 233 GLN LEU LEU GLU LEU VAL TRP GLY TYR ASP PHE ALA ALA SEQRES 16 B 233 ASP THR ASN VAL VAL ASP VAL PHE ILE GLY TYR LEU ARG SEQRES 17 B 233 ARG LYS LEU GLU ALA GLY GLY GLY PRO ARG LEU LEU HIS SEQRES 18 B 233 THR VAL ARG GLY VAL GLY PHE VAL LEU ARG MET GLN HET MG A1002 1 HET ACT A4001 4 HET ACT A4002 4 HET MG B1001 1 HET TRS B3001 8 HET GOL B2001 6 HET GOL B2002 6 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *191(H2 O) HELIX 1 1 ASP A 16 SER A 30 1 15 HELIX 2 2 ASP A 39 ASN A 50 1 12 HELIX 3 3 ASP A 65 MET A 76 1 12 HELIX 4 4 VAL A 111 SER A 128 1 18 HELIX 5 5 THR A 161 HIS A 174 1 14 HELIX 6 6 SER A 180 GLY A 190 1 11 HELIX 7 7 ASN A 198 ALA A 213 1 16 HELIX 8 8 ASP B 16 SER B 30 1 15 HELIX 9 9 ASP B 39 ASN B 50 1 12 HELIX 10 10 ASP B 65 MET B 76 1 12 HELIX 11 11 SER B 90 GLY B 101 1 12 HELIX 12 12 VAL B 111 ARG B 125 1 15 HELIX 13 13 THR B 161 HIS B 174 1 14 HELIX 14 14 SER B 180 VAL B 188 1 9 HELIX 15 15 ASN B 198 ALA B 213 1 16 SHEET 1 A 5 GLU A 33 ALA A 37 0 SHEET 2 A 5 ARG A 9 VAL A 13 1 N VAL A 10 O GLU A 33 SHEET 3 A 5 ALA A 54 ASP A 58 1 O VAL A 56 N LEU A 11 SHEET 4 A 5 VAL A 82 SER A 86 1 O CYS A 83 N ILE A 55 SHEET 5 A 5 ASP A 104 VAL A 107 1 O ASP A 104 N VAL A 84 SHEET 1 B 4 THR A 136 VAL A 139 0 SHEET 2 B 4 LEU A 142 ASP A 145 -1 O VAL A 144 N ILE A 137 SHEET 3 B 4 ARG A 150 VAL A 153 -1 O ARG A 150 N ASP A 145 SHEET 4 B 4 VAL A 156 ASP A 157 -1 O VAL A 156 N VAL A 153 SHEET 1 C 2 LEU A 220 VAL A 223 0 SHEET 2 C 2 GLY A 227 LEU A 230 -1 O GLY A 227 N VAL A 223 SHEET 1 D 5 GLU B 33 ALA B 37 0 SHEET 2 D 5 ARG B 9 VAL B 13 1 N VAL B 10 O GLU B 33 SHEET 3 D 5 ALA B 54 ASP B 58 1 O VAL B 56 N LEU B 11 SHEET 4 D 5 VAL B 82 ALA B 87 1 O CYS B 83 N LEU B 57 SHEET 5 D 5 ASP B 104 LYS B 108 1 O LYS B 108 N SER B 86 SHEET 1 E 4 ILE B 137 VAL B 139 0 SHEET 2 E 4 LEU B 142 ASP B 145 -1 O VAL B 144 N ILE B 137 SHEET 3 E 4 ARG B 150 VAL B 153 -1 O ARG B 150 N ASP B 145 SHEET 4 E 4 VAL B 156 ASP B 157 -1 O VAL B 156 N VAL B 153 SHEET 1 F 3 VAL B 178 LEU B 179 0 SHEET 2 F 3 GLY B 227 LEU B 230 -1 O PHE B 228 N LEU B 179 SHEET 3 F 3 LEU B 220 VAL B 223 -1 N VAL B 223 O GLY B 227 LINK OD1 ASP A 15 MG MG A1002 1555 1555 1.97 LINK OD2 ASP A 58 MG MG A1002 1555 1555 2.03 LINK O ASN A 60 MG MG A1002 1555 1555 2.11 LINK MG MG A1002 O HOH A4014 1555 1555 2.10 LINK MG MG A1002 O HOH A4021 1555 1555 2.10 LINK MG MG A1002 O HOH A4037 1555 1555 2.03 LINK OD1 ASP B 15 MG MG B1001 1555 1555 2.02 LINK OD2 ASP B 58 MG MG B1001 1555 1555 1.96 LINK O ASN B 60 MG MG B1001 1555 1555 2.01 LINK MG MG B1001 O HOH B3006 1555 1555 2.04 LINK MG MG B1001 O HOH B3013 1555 1555 2.14 LINK MG MG B1001 O HOH B3028 1555 1555 2.07 CISPEP 1 SER A 90 VAL A 91 0 -0.28 CISPEP 2 VAL A 91 ASP A 92 0 1.74 CISPEP 3 LYS A 108 PRO A 109 0 -1.27 CISPEP 4 LYS B 108 PRO B 109 0 -5.43 SITE 1 AC1 6 ASP B 15 ASP B 58 ASN B 60 HOH B3006 SITE 2 AC1 6 HOH B3013 HOH B3028 SITE 1 AC2 6 ASP A 15 ASP A 58 ASN A 60 HOH A4014 SITE 2 AC2 6 HOH A4021 HOH A4037 SITE 1 AC3 4 TYR A 105 LEU A 106 VAL A 107 ARG A 118 SITE 1 AC4 6 ARG A 181 ARG A 224 GLY A 225 PHE A 228 SITE 2 AC4 6 HOH A4030 HOH A4044 SITE 1 AC5 4 GLU B 49 ARG B 94 TYR B 105 ASN B 198 SITE 1 AC6 8 ARG B 149 ARG B 150 ALA B 151 VAL B 158 SITE 2 AC6 8 ASP B 159 LEU B 160 PHE B 165 HOH B3033 SITE 1 AC7 8 ASP A 18 GLU A 135 ASP B 15 ASP B 16 SITE 2 AC7 8 SER B 17 HOH B3017 HOH B3021 HOH B3052 CRYST1 37.350 46.486 65.554 100.33 102.01 92.90 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026774 0.001359 0.006077 0.00000 SCALE2 0.000000 0.021540 0.004268 0.00000 SCALE3 0.000000 0.000000 0.015899 0.00000