data_1YSA # _entry.id 1YSA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YSA pdb_00001ysa 10.2210/pdb1ysa/pdb RCSB PDT002 ? ? WWPDB D_1000177428 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-10-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YSA _pdbx_database_status.recvd_initial_deposition_date 1993-08-09 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ellenberger, T.E.' 1 'Brandl, C.J.' 2 'Struhl, K.' 3 'Harrison, S.C.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. ; 'Cell(Cambridge,Mass.)' 71 1223 1237 1992 CELLB5 US 0092-8674 0998 ? 1473154 '10.1016/S0092-8674(05)80070-4' 1 'X-Ray Structure of the GCN4 Leucine Zipper, a Two-Stranded, Parallel Coiled Coil' Science 254 539 ? 1991 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ellenberger, T.E.' 1 ? primary 'Brandl, C.J.' 2 ? primary 'Struhl, K.' 3 ? primary 'Harrison, S.C.' 4 ? 1 ;O'Shea, E.K. ; 5 ? 1 'Klemm, J.D.' 6 ? 1 'Kim, P.S.' 7 ? 1 'Alber, T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3') ; 6034.915 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3') ; 6231.067 1 ? ? ? ? 3 polymer nat 'PROTEIN (GCN4)' 6892.072 2 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DC)(DT)(DA)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DT)(DC)(DC)(DA)(DG)(DT)(DT)' TTCCTATGACTCATCCAGTT A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DC)(DT)(DG)(DG)(DA)(DT)(DG)(DA)(DG)(DT)(DC)(DA)(DT)(DA)(DG)(DG)(DA)' AAACTGGATGAGTCATAGGA B ? 3 'polypeptide(L)' no no MKDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER MKDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER C,D ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DT n 1 12 DC n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DA n 1 18 DG n 1 19 DT n 1 20 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DA n 2 12 DG n 2 13 DT n 2 14 DC n 2 15 DA n 2 16 DT n 2 17 DA n 2 18 DG n 2 19 DG n 2 20 DA n 3 1 MET n 3 2 LYS n 3 3 ASP n 3 4 PRO n 3 5 ALA n 3 6 ALA n 3 7 LEU n 3 8 LYS n 3 9 ARG n 3 10 ALA n 3 11 ARG n 3 12 ASN n 3 13 THR n 3 14 GLU n 3 15 ALA n 3 16 ALA n 3 17 ARG n 3 18 ARG n 3 19 SER n 3 20 ARG n 3 21 ALA n 3 22 ARG n 3 23 LYS n 3 24 LEU n 3 25 GLN n 3 26 ARG n 3 27 MET n 3 28 LYS n 3 29 GLN n 3 30 LEU n 3 31 GLU n 3 32 ASP n 3 33 LYS n 3 34 VAL n 3 35 GLU n 3 36 GLU n 3 37 LEU n 3 38 LEU n 3 39 SER n 3 40 LYS n 3 41 ASN n 3 42 TYR n 3 43 HIS n 3 44 LEU n 3 45 GLU n 3 46 ASN n 3 47 GLU n 3 48 VAL n 3 49 ALA n 3 50 ARG n 3 51 LEU n 3 52 LYS n 3 53 LYS n 3 54 LEU n 3 55 VAL n 3 56 GLY n 3 57 GLU n 3 58 ARG n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DA 13 13 13 DA A A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DC 15 15 15 DC C A . n A 1 16 DC 16 16 16 DC C A . n A 1 17 DA 17 17 17 DA A A . n A 1 18 DG 18 18 18 DG G A . n A 1 19 DT 19 19 19 DT T A . n A 1 20 DT 20 20 20 DT T A . n B 2 1 DA 1 21 21 DA A B . n B 2 2 DA 2 22 22 DA A B . n B 2 3 DA 3 23 23 DA A B . n B 2 4 DC 4 24 24 DC C B . n B 2 5 DT 5 25 25 DT T B . n B 2 6 DG 6 26 26 DG G B . n B 2 7 DG 7 27 27 DG G B . n B 2 8 DA 8 28 28 DA A B . n B 2 9 DT 9 29 29 DT T B . n B 2 10 DG 10 30 30 DG G B . n B 2 11 DA 11 31 31 DA A B . n B 2 12 DG 12 32 32 DG G B . n B 2 13 DT 13 33 33 DT T B . n B 2 14 DC 14 34 34 DC C B . n B 2 15 DA 15 35 35 DA A B . n B 2 16 DT 16 36 36 DT T B . n B 2 17 DA 17 37 37 DA A B . n B 2 18 DG 18 38 38 DG G B . n B 2 19 DG 19 39 39 DG G B . n B 2 20 DA 20 40 40 DA A B . n C 3 1 MET 1 224 ? ? ? C . n C 3 2 LYS 2 225 225 LYS LYS C . n C 3 3 ASP 3 226 226 ASP ASP C . n C 3 4 PRO 4 227 227 PRO PRO C . n C 3 5 ALA 5 228 228 ALA ALA C . n C 3 6 ALA 6 229 229 ALA ALA C . n C 3 7 LEU 7 230 230 LEU LEU C . n C 3 8 LYS 8 231 231 LYS LYS C . n C 3 9 ARG 9 232 232 ARG ARG C . n C 3 10 ALA 10 233 233 ALA ALA C . n C 3 11 ARG 11 234 234 ARG ARG C . n C 3 12 ASN 12 235 235 ASN ASN C . n C 3 13 THR 13 236 236 THR THR C . n C 3 14 GLU 14 237 237 GLU GLU C . n C 3 15 ALA 15 238 238 ALA ALA C . n C 3 16 ALA 16 239 239 ALA ALA C . n C 3 17 ARG 17 240 240 ARG ARG C . n C 3 18 ARG 18 241 241 ARG ARG C . n C 3 19 SER 19 242 242 SER SER C . n C 3 20 ARG 20 243 243 ARG ARG C . n C 3 21 ALA 21 244 244 ALA ALA C . n C 3 22 ARG 22 245 245 ARG ARG C . n C 3 23 LYS 23 246 246 LYS LYS C . n C 3 24 LEU 24 247 247 LEU LEU C . n C 3 25 GLN 25 248 248 GLN GLN C . n C 3 26 ARG 26 249 249 ARG ARG C . n C 3 27 MET 27 250 250 MET MET C . n C 3 28 LYS 28 251 251 LYS LYS C . n C 3 29 GLN 29 252 252 GLN GLN C . n C 3 30 LEU 30 253 253 LEU LEU C . n C 3 31 GLU 31 254 254 GLU GLU C . n C 3 32 ASP 32 255 255 ASP ASP C . n C 3 33 LYS 33 256 256 LYS LYS C . n C 3 34 VAL 34 257 257 VAL VAL C . n C 3 35 GLU 35 258 258 GLU GLU C . n C 3 36 GLU 36 259 259 GLU GLU C . n C 3 37 LEU 37 260 260 LEU LEU C . n C 3 38 LEU 38 261 261 LEU LEU C . n C 3 39 SER 39 262 262 SER SER C . n C 3 40 LYS 40 263 263 LYS LYS C . n C 3 41 ASN 41 264 264 ASN ASN C . n C 3 42 TYR 42 265 265 TYR TYR C . n C 3 43 HIS 43 266 266 HIS HIS C . n C 3 44 LEU 44 267 267 LEU LEU C . n C 3 45 GLU 45 268 268 GLU GLU C . n C 3 46 ASN 46 269 269 ASN ASN C . n C 3 47 GLU 47 270 270 GLU GLU C . n C 3 48 VAL 48 271 271 VAL VAL C . n C 3 49 ALA 49 272 272 ALA ALA C . n C 3 50 ARG 50 273 273 ARG ARG C . n C 3 51 LEU 51 274 274 LEU LEU C . n C 3 52 LYS 52 275 275 LYS LYS C . n C 3 53 LYS 53 276 276 LYS LYS C . n C 3 54 LEU 54 277 277 LEU LEU C . n C 3 55 VAL 55 278 278 VAL VAL C . n C 3 56 GLY 56 279 279 GLY GLY C . n C 3 57 GLU 57 280 280 GLU GLU C . n C 3 58 ARG 58 281 281 ARG ARG C . n D 3 1 MET 1 224 224 MET MET D . n D 3 2 LYS 2 225 225 LYS LYS D . n D 3 3 ASP 3 226 226 ASP ASP D . n D 3 4 PRO 4 227 227 PRO PRO D . n D 3 5 ALA 5 228 228 ALA ALA D . n D 3 6 ALA 6 229 229 ALA ALA D . n D 3 7 LEU 7 230 230 LEU LEU D . n D 3 8 LYS 8 231 231 LYS LYS D . n D 3 9 ARG 9 232 232 ARG ARG D . n D 3 10 ALA 10 233 233 ALA ALA D . n D 3 11 ARG 11 234 234 ARG ARG D . n D 3 12 ASN 12 235 235 ASN ASN D . n D 3 13 THR 13 236 236 THR THR D . n D 3 14 GLU 14 237 237 GLU GLU D . n D 3 15 ALA 15 238 238 ALA ALA D . n D 3 16 ALA 16 239 239 ALA ALA D . n D 3 17 ARG 17 240 240 ARG ARG D . n D 3 18 ARG 18 241 241 ARG ARG D . n D 3 19 SER 19 242 242 SER SER D . n D 3 20 ARG 20 243 243 ARG ARG D . n D 3 21 ALA 21 244 244 ALA ALA D . n D 3 22 ARG 22 245 245 ARG ARG D . n D 3 23 LYS 23 246 246 LYS LYS D . n D 3 24 LEU 24 247 247 LEU LEU D . n D 3 25 GLN 25 248 248 GLN GLN D . n D 3 26 ARG 26 249 249 ARG ARG D . n D 3 27 MET 27 250 250 MET MET D . n D 3 28 LYS 28 251 251 LYS LYS D . n D 3 29 GLN 29 252 252 GLN GLN D . n D 3 30 LEU 30 253 253 LEU LEU D . n D 3 31 GLU 31 254 254 GLU GLU D . n D 3 32 ASP 32 255 255 ASP ASP D . n D 3 33 LYS 33 256 256 LYS LYS D . n D 3 34 VAL 34 257 257 VAL VAL D . n D 3 35 GLU 35 258 258 GLU GLU D . n D 3 36 GLU 36 259 259 GLU GLU D . n D 3 37 LEU 37 260 260 LEU LEU D . n D 3 38 LEU 38 261 261 LEU LEU D . n D 3 39 SER 39 262 262 SER SER D . n D 3 40 LYS 40 263 263 LYS LYS D . n D 3 41 ASN 41 264 264 ASN ASN D . n D 3 42 TYR 42 265 265 TYR TYR D . n D 3 43 HIS 43 266 266 HIS HIS D . n D 3 44 LEU 44 267 267 LEU LEU D . n D 3 45 GLU 45 268 268 GLU GLU D . n D 3 46 ASN 46 269 269 ASN ASN D . n D 3 47 GLU 47 270 270 GLU GLU D . n D 3 48 VAL 48 271 271 VAL VAL D . n D 3 49 ALA 49 272 272 ALA ALA D . n D 3 50 ARG 50 273 273 ARG ARG D . n D 3 51 LEU 51 274 274 LEU LEU D . n D 3 52 LYS 52 275 275 LYS LYS D . n D 3 53 LYS 53 276 276 LYS LYS D . n D 3 54 LEU 54 277 277 LEU LEU D . n D 3 55 VAL 55 278 278 VAL VAL D . n D 3 56 GLY 56 279 279 GLY GLY D . n D 3 57 GLU 57 280 280 GLU GLU D . n D 3 58 ARG 58 281 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 401 401 HOH HOH A . E 4 HOH 2 407 407 HOH HOH A . E 4 HOH 3 409 409 HOH HOH A . E 4 HOH 4 415 415 HOH HOH A . F 4 HOH 1 403 403 HOH HOH B . F 4 HOH 2 412 412 HOH HOH B . G 4 HOH 1 402 402 HOH HOH C . G 4 HOH 2 405 405 HOH HOH C . G 4 HOH 3 408 408 HOH HOH C . G 4 HOH 4 416 416 HOH HOH C . H 4 HOH 1 400 400 HOH HOH D . H 4 HOH 2 404 404 HOH HOH D . H 4 HOH 3 406 406 HOH HOH D . H 4 HOH 4 410 410 HOH HOH D . H 4 HOH 5 411 411 HOH HOH D . H 4 HOH 6 413 413 HOH HOH D . H 4 HOH 7 414 414 HOH HOH D . # _software.name TNT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1YSA _cell.length_a 49.130 _cell.length_b 88.540 _cell.length_c 59.240 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YSA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1YSA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.40 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.75 _exptl_crystal_grow.pdbx_details ;pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 295.00K TWO ADENINES, B22 AND B23, WHICH ARE NEAR THE 5-PRIME END OF DNA CHAIN B ARE LOOPED OUT OF THE DNA HELIX. THIS CONFORMATION IS PRESENT IN CRYSTALS THAT WERE SOAKED IN 35% (VOL/VOL) POLYETHYLENE GLYCOL MW 400, FOLLOWED BY RAPID FREEZING AND X-RAY DATA COLLECTION AT -155 DEG. CENTIGRADE. ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 400' ? ? ? 1 3 1 NACL ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 MES ? ? ? 1 6 1 SPERMINE_HCL ? ? ? 1 7 2 WATER ? ? ? 1 8 2 'PEG 400' ? ? ? 1 9 3 WATER ? ? ? 1 10 3 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 118.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS-NICOLET _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-13' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YSA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1.500 _reflns.d_resolution_low 8.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 5289 _reflns.number_all ? _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1YSA _refine.ls_number_reflns_obs 5289 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.23 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1772 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 3.300 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1YSA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YSA _struct.title ;THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YSA _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GCN4_YEAST 3 P03069 ? 226 ? 2 PDB 1YSA 1 1YSA ? ? ? 3 PDB 1YSA 2 1YSA ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YSA C 3 ? 58 ? P03069 226 ? 281 ? 226 281 2 1 1YSA D 3 ? 58 ? P03069 226 ? 281 ? 226 281 3 2 1YSA A 1 ? 20 ? 1YSA 1 ? 20 ? 1 20 4 3 1YSA B 1 ? 20 ? 1YSA 21 ? 40 ? 21 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 C1 ALA C 5 ? GLY C 56 ? ALA C 228 GLY C 279 1 ? 52 HELX_P HELX_P2 D1 ALA D 5 ? GLY D 56 ? ALA D 228 GLY D 279 1 ? 52 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 20 N1 ? ? A DT 2 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 20 N6 ? ? A DT 2 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 19 N1 ? ? A DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 19 O6 ? ? A DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 19 N2 ? ? A DC 3 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 18 N1 ? ? A DC 4 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 18 O6 ? ? A DC 4 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 18 N2 ? ? A DC 4 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 17 N1 ? ? A DT 5 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 17 N6 ? ? A DT 5 B DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 16 N3 ? ? A DA 6 B DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 16 O4 ? ? A DA 6 B DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 7 B DA 35 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 9 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 9 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 10 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 10 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 10 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 11 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 11 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 12 B DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 12 B DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 12 B DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 13 B DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 13 B DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 14 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 14 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 15 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 15 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 15 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 17 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 17 B DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 18 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 18 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 18 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 19 B DA 21 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog43 hydrog ? ? A DT 19 O2 ? ? ? 1_555 B DA 1 N6 ? ? A DT 19 B DA 21 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 1.567 1.512 0.055 0.007 N 2 1 N1 A DT 1 ? ? C2 A DT 1 ? ? 1.431 1.376 0.055 0.008 N 3 1 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.551 1.496 0.055 0.006 N 4 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.558 1.512 0.046 0.007 N 5 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.334 1.374 -0.040 0.006 N 6 1 N1 A DT 7 ? ? C2 A DT 7 ? ? 1.316 1.376 -0.060 0.008 N 7 1 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.534 1.496 0.038 0.006 N 8 1 "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 1.559 1.512 0.047 0.007 N 9 1 C8 A DG 8 ? ? N9 A DG 8 ? ? 1.326 1.374 -0.048 0.007 N 10 1 "O3'" A DA 9 ? ? "C3'" A DA 9 ? ? 1.353 1.419 -0.066 0.006 N 11 1 N1 A DC 10 ? ? C6 A DC 10 ? ? 1.303 1.367 -0.064 0.006 N 12 1 "C5'" A DT 11 ? ? "C4'" A DT 11 ? ? 1.570 1.512 0.058 0.007 N 13 1 C5 A DT 14 ? ? C7 A DT 14 ? ? 1.536 1.496 0.040 0.006 N 14 1 "C5'" A DG 18 ? ? "C4'" A DG 18 ? ? 1.571 1.512 0.059 0.007 N 15 1 C5 A DT 19 ? ? C7 A DT 19 ? ? 1.532 1.496 0.036 0.006 N 16 1 P A DT 20 ? ? "O5'" A DT 20 ? ? 1.657 1.593 0.064 0.010 N 17 1 "C5'" A DT 20 ? ? "C4'" A DT 20 ? ? 1.564 1.512 0.052 0.007 N 18 1 "C4'" B DA 23 ? ? "C3'" B DA 23 ? ? 1.610 1.529 0.081 0.010 N 19 1 "O3'" B DC 24 ? ? P B DT 25 ? ? 1.711 1.607 0.104 0.012 Y 20 1 "C5'" B DT 25 ? ? "C4'" B DT 25 ? ? 1.564 1.512 0.052 0.007 N 21 1 C5 B DT 25 ? ? C6 B DT 25 ? ? 1.389 1.339 0.050 0.007 N 22 1 "O3'" B DT 25 ? ? P B DG 26 ? ? 1.690 1.607 0.083 0.012 Y 23 1 "C5'" B DG 26 ? ? "C4'" B DG 26 ? ? 1.415 1.509 -0.094 0.011 N 24 1 P B DG 27 ? ? "O5'" B DG 27 ? ? 1.659 1.593 0.066 0.010 N 25 1 "C5'" B DG 27 ? ? "C4'" B DG 27 ? ? 1.563 1.512 0.051 0.007 N 26 1 "O3'" B DT 29 ? ? "C3'" B DT 29 ? ? 1.369 1.419 -0.050 0.006 N 27 1 "O3'" B DG 30 ? ? "C3'" B DG 30 ? ? 1.382 1.419 -0.037 0.006 N 28 1 "O3'" B DG 30 ? ? P B DA 31 ? ? 1.532 1.607 -0.075 0.012 Y 29 1 C4 B DA 31 ? ? C5 B DA 31 ? ? 1.332 1.383 -0.051 0.007 N 30 1 C5 B DA 31 ? ? C6 B DA 31 ? ? 1.348 1.406 -0.058 0.009 N 31 1 C6 B DA 31 ? ? N1 B DA 31 ? ? 1.301 1.351 -0.050 0.007 N 32 1 C5 B DA 31 ? ? N7 B DA 31 ? ? 1.343 1.388 -0.045 0.006 N 33 1 C6 B DA 31 ? ? N6 B DA 31 ? ? 1.270 1.335 -0.065 0.008 N 34 1 "O3'" B DG 32 ? ? P B DT 33 ? ? 1.510 1.607 -0.097 0.012 Y 35 1 "C5'" B DA 35 ? ? "C4'" B DA 35 ? ? 1.608 1.512 0.096 0.007 N 36 1 "O3'" B DA 35 ? ? P B DT 36 ? ? 1.685 1.607 0.078 0.012 Y 37 1 "O3'" B DT 36 ? ? "C3'" B DT 36 ? ? 1.380 1.419 -0.039 0.006 N 38 1 N9 B DA 37 ? ? C4 B DA 37 ? ? 1.327 1.374 -0.047 0.006 N 39 1 P B DG 39 ? ? "O5'" B DG 39 ? ? 1.714 1.593 0.121 0.010 N 40 1 "C5'" B DG 39 ? ? "C4'" B DG 39 ? ? 1.632 1.512 0.120 0.007 N 41 1 "O4'" B DG 39 ? ? "C4'" B DG 39 ? ? 1.504 1.449 0.055 0.009 N 42 1 CA C VAL 278 ? ? CB C VAL 278 ? ? 1.669 1.543 0.126 0.021 N 43 1 NE2 D HIS 266 ? ? CD2 D HIS 266 ? ? 1.299 1.373 -0.074 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 113.21 108.30 4.91 0.30 N 2 1 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 116.02 122.30 -6.28 0.60 N 3 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.53 122.90 -4.37 0.60 N 4 1 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DT 2 ? ? 108.67 119.70 -11.03 1.20 Y 5 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? "C2'" A DT 2 ? ? 96.36 105.90 -9.54 0.80 N 6 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 97.79 108.00 -10.21 0.70 N 7 1 C4 A DT 2 ? ? C5 A DT 2 ? ? C6 A DT 2 ? ? 122.56 118.00 4.56 0.60 N 8 1 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.38 122.30 -3.92 0.60 N 9 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 117.54 122.90 -5.36 0.60 N 10 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 114.59 106.00 8.59 0.60 N 11 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 91.77 102.20 -10.43 0.70 N 12 1 "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? "C1'" A DC 4 ? ? 111.01 102.50 8.51 1.20 N 13 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 100.01 105.90 -5.89 0.80 N 14 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 113.63 108.30 5.33 0.30 N 15 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.88 118.90 3.98 0.60 N 16 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DT 5 ? ? 134.07 119.70 14.37 1.20 Y 17 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 99.89 105.90 -6.01 0.80 N 18 1 C4 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 114.00 119.00 -5.00 0.60 N 19 1 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DA 6 ? ? 128.99 119.70 9.29 1.20 Y 20 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 96.78 102.20 -5.42 0.70 N 21 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 110.47 106.00 4.47 0.60 N 22 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 117.44 108.30 9.14 0.30 N 23 1 C4 A DG 8 ? ? C5 A DG 8 ? ? N7 A DG 8 ? ? 107.57 110.80 -3.23 0.40 N 24 1 N9 A DG 8 ? ? C4 A DG 8 ? ? C5 A DG 8 ? ? 108.54 105.40 3.14 0.40 N 25 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 113.75 108.30 5.45 0.30 N 26 1 N9 A DA 9 ? ? C4 A DA 9 ? ? C5 A DA 9 ? ? 108.35 105.80 2.55 0.40 N 27 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 128.86 123.70 5.16 0.80 N 28 1 "C3'" A DA 9 ? ? "O3'" A DA 9 ? ? P A DC 10 ? ? 128.26 119.70 8.56 1.20 Y 29 1 "O3'" A DA 9 ? ? P A DC 10 ? ? "O5'" A DC 10 ? ? 81.29 104.00 -22.71 1.90 Y 30 1 "C1'" A DC 10 ? ? "O4'" A DC 10 ? ? "C4'" A DC 10 ? ? 103.52 110.10 -6.58 1.00 N 31 1 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 125.24 118.90 6.34 0.60 N 32 1 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 115.46 121.90 -6.44 0.70 N 33 1 "C3'" A DC 10 ? ? "O3'" A DC 10 ? ? P A DT 11 ? ? 129.00 119.70 9.30 1.20 Y 34 1 "O4'" A DT 11 ? ? "C4'" A DT 11 ? ? "C3'" A DT 11 ? ? 102.06 104.50 -2.44 0.40 N 35 1 "C1'" A DT 11 ? ? "O4'" A DT 11 ? ? "C4'" A DT 11 ? ? 116.21 110.30 5.91 0.70 N 36 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? "C2'" A DT 11 ? ? 96.50 105.90 -9.40 0.80 N 37 1 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 116.47 122.30 -5.83 0.60 N 38 1 C5 A DT 11 ? ? C4 A DT 11 ? ? O4 A DT 11 ? ? 129.31 124.90 4.41 0.70 N 39 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.61 122.90 -4.29 0.60 N 40 1 P A DC 12 ? ? "O5'" A DC 12 ? ? "C5'" A DC 12 ? ? 111.26 120.90 -9.64 1.60 N 41 1 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 110.26 106.00 4.26 0.60 N 42 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 110.89 108.30 2.59 0.30 N 43 1 "C3'" A DC 12 ? ? "O3'" A DC 12 ? ? P A DA 13 ? ? 129.25 119.70 9.55 1.20 Y 44 1 "O3'" A DC 12 ? ? P A DA 13 ? ? "O5'" A DA 13 ? ? 91.54 104.00 -12.46 1.90 Y 45 1 "C4'" A DT 14 ? ? "C3'" A DT 14 ? ? "C2'" A DT 14 ? ? 97.84 102.20 -4.36 0.70 N 46 1 "C3'" A DT 14 ? ? "C2'" A DT 14 ? ? "C1'" A DT 14 ? ? 111.14 102.50 8.64 1.20 N 47 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? "C2'" A DT 14 ? ? 99.33 105.90 -6.57 0.80 N 48 1 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? "C2'" A DC 15 ? ? 94.93 105.90 -10.97 0.80 N 49 1 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 123.54 118.90 4.64 0.60 N 50 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 115.92 121.90 -5.98 0.70 N 51 1 "C3'" A DC 15 ? ? "O3'" A DC 15 ? ? P A DC 16 ? ? 130.92 119.70 11.22 1.20 Y 52 1 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.87 108.30 2.57 0.30 N 53 1 N1 A DC 16 ? ? C2 A DC 16 ? ? O2 A DC 16 ? ? 124.44 118.90 5.54 0.60 N 54 1 "C3'" A DC 16 ? ? "O3'" A DC 16 ? ? P A DA 17 ? ? 129.91 119.70 10.21 1.20 Y 55 1 "O3'" A DC 16 ? ? P A DA 17 ? ? "O5'" A DA 17 ? ? 91.12 104.00 -12.88 1.90 Y 56 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? "C2'" A DG 18 ? ? 99.76 105.90 -6.14 0.80 N 57 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 103.63 108.00 -4.37 0.70 N 58 1 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? "C2'" A DT 19 ? ? 94.48 105.90 -11.42 0.80 N 59 1 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 117.50 122.90 -5.40 0.60 N 60 1 "O3'" A DT 19 ? ? P A DT 20 ? ? "O5'" A DT 20 ? ? 90.94 104.00 -13.06 1.90 Y 61 1 "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? "C3'" A DT 20 ? ? 109.64 106.00 3.64 0.60 N 62 1 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 112.04 108.30 3.74 0.30 N 63 1 N3 A DT 20 ? ? C4 A DT 20 ? ? O4 A DT 20 ? ? 125.72 119.90 5.82 0.60 N 64 1 "C3'" B DA 21 ? ? "O3'" B DA 21 ? ? P B DA 22 ? ? 133.74 119.70 14.04 1.20 Y 65 1 "O3'" B DA 21 ? ? P B DA 22 ? ? "O5'" B DA 22 ? ? 89.09 104.00 -14.91 1.90 Y 66 1 P B DA 22 ? ? "O5'" B DA 22 ? ? "C5'" B DA 22 ? ? 108.33 120.90 -12.57 1.60 N 67 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? "C2'" B DA 22 ? ? 100.36 105.90 -5.54 0.80 N 68 1 "C3'" B DA 22 ? ? "O3'" B DA 22 ? ? P B DA 23 ? ? 138.80 119.70 19.10 1.20 Y 69 1 "C1'" B DA 23 ? ? "O4'" B DA 23 ? ? "C4'" B DA 23 ? ? 99.54 110.10 -10.56 1.00 N 70 1 "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 93.94 102.40 -8.46 0.80 N 71 1 C5 B DA 23 ? ? N7 B DA 23 ? ? C8 B DA 23 ? ? 100.53 103.90 -3.37 0.50 N 72 1 "O4'" B DC 24 ? ? "C4'" B DC 24 ? ? "C3'" B DC 24 ? ? 112.36 106.00 6.36 0.60 N 73 1 "C4'" B DC 24 ? ? "C3'" B DC 24 ? ? "C2'" B DC 24 ? ? 96.69 102.20 -5.51 0.70 N 74 1 "C3'" B DC 24 ? ? "C2'" B DC 24 ? ? "C1'" B DC 24 ? ? 112.02 102.50 9.52 1.20 N 75 1 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? "C2'" B DC 24 ? ? 99.56 105.90 -6.34 0.80 N 76 1 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 110.48 108.30 2.18 0.30 N 77 1 "O3'" B DC 24 ? ? P B DT 25 ? ? OP1 B DT 25 ? ? 117.40 110.50 6.90 1.10 Y 78 1 C6 B DT 25 ? ? N1 B DT 25 ? ? C2 B DT 25 ? ? 117.77 121.30 -3.53 0.50 N 79 1 N1 B DT 25 ? ? C2 B DT 25 ? ? N3 B DT 25 ? ? 120.55 114.60 5.95 0.60 N 80 1 C4 B DT 25 ? ? C5 B DT 25 ? ? C6 B DT 25 ? ? 123.65 118.00 5.65 0.60 N 81 1 C5 B DT 25 ? ? C6 B DT 25 ? ? N1 B DT 25 ? ? 120.05 123.70 -3.65 0.60 N 82 1 N3 B DT 25 ? ? C2 B DT 25 ? ? O2 B DT 25 ? ? 116.88 122.30 -5.42 0.60 N 83 1 C4 B DT 25 ? ? C5 B DT 25 ? ? C7 B DT 25 ? ? 113.90 119.00 -5.10 0.60 N 84 1 C6 B DT 25 ? ? N1 B DT 25 ? ? "C1'" B DT 25 ? ? 130.54 120.40 10.14 1.50 N 85 1 "C3'" B DT 25 ? ? "O3'" B DT 25 ? ? P B DG 26 ? ? 128.42 119.70 8.72 1.20 Y 86 1 "O4'" B DG 26 ? ? "C4'" B DG 26 ? ? "C3'" B DG 26 ? ? 115.21 106.00 9.21 0.60 N 87 1 "C4'" B DG 26 ? ? "C3'" B DG 26 ? ? "C2'" B DG 26 ? ? 94.81 102.20 -7.39 0.70 N 88 1 "C1'" B DG 27 ? ? "O4'" B DG 27 ? ? "C4'" B DG 27 ? ? 114.67 110.30 4.37 0.70 N 89 1 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? "C2'" B DG 27 ? ? 97.64 105.90 -8.26 0.80 N 90 1 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? N9 B DG 27 ? ? 112.61 108.30 4.31 0.30 N 91 1 C5 B DA 28 ? ? C6 B DA 28 ? ? N1 B DA 28 ? ? 120.91 117.70 3.21 0.50 N 92 1 N1 B DA 28 ? ? C6 B DA 28 ? ? N6 B DA 28 ? ? 114.63 118.60 -3.97 0.60 N 93 1 P B DT 29 ? ? "O5'" B DT 29 ? ? "C5'" B DT 29 ? ? 104.22 120.90 -16.68 1.60 N 94 1 "O4'" B DT 29 ? ? "C4'" B DT 29 ? ? "C3'" B DT 29 ? ? 109.82 106.00 3.82 0.60 N 95 1 "O4'" B DT 29 ? ? "C1'" B DT 29 ? ? "C2'" B DT 29 ? ? 98.32 105.90 -7.58 0.80 N 96 1 N3 B DT 29 ? ? C2 B DT 29 ? ? O2 B DT 29 ? ? 116.88 122.30 -5.42 0.60 N 97 1 C6 B DT 29 ? ? C5 B DT 29 ? ? C7 B DT 29 ? ? 116.69 122.90 -6.21 0.60 N 98 1 "O4'" B DG 30 ? ? "C4'" B DG 30 ? ? "C3'" B DG 30 ? ? 109.90 106.00 3.90 0.60 N 99 1 "C4'" B DG 30 ? ? "C3'" B DG 30 ? ? "C2'" B DG 30 ? ? 97.06 102.20 -5.14 0.70 N 100 1 "O4'" B DG 30 ? ? "C1'" B DG 30 ? ? "C2'" B DG 30 ? ? 100.21 105.90 -5.69 0.80 N 101 1 "C3'" B DG 30 ? ? "O3'" B DG 30 ? ? P B DA 31 ? ? 131.75 119.70 12.05 1.20 Y 102 1 "C4'" B DA 31 ? ? "C3'" B DA 31 ? ? "C2'" B DA 31 ? ? 97.47 102.20 -4.73 0.70 N 103 1 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? "C2'" B DA 31 ? ? 99.99 105.90 -5.91 0.80 N 104 1 C6 B DA 31 ? ? N1 B DA 31 ? ? C2 B DA 31 ? ? 114.26 118.60 -4.34 0.60 N 105 1 C5 B DA 31 ? ? C6 B DA 31 ? ? N1 B DA 31 ? ? 121.75 117.70 4.05 0.50 N 106 1 C8 B DA 31 ? ? N9 B DA 31 ? ? C4 B DA 31 ? ? 103.22 105.80 -2.58 0.40 N 107 1 "C3'" B DA 31 ? ? "O3'" B DA 31 ? ? P B DG 32 ? ? 132.77 119.70 13.07 1.20 Y 108 1 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? "C2'" B DG 32 ? ? 99.61 105.90 -6.29 0.80 N 109 1 "O3'" B DG 32 ? ? P B DT 33 ? ? "O5'" B DT 33 ? ? 88.44 104.00 -15.56 1.90 Y 110 1 "O5'" B DT 33 ? ? P B DT 33 ? ? OP2 B DT 33 ? ? 118.31 110.70 7.61 1.20 N 111 1 "O4'" B DT 33 ? ? "C1'" B DT 33 ? ? "C2'" B DT 33 ? ? 99.71 105.90 -6.19 0.80 N 112 1 "O4'" B DT 33 ? ? "C1'" B DT 33 ? ? N1 B DT 33 ? ? 111.82 108.30 3.52 0.30 N 113 1 N1 B DT 33 ? ? C2 B DT 33 ? ? N3 B DT 33 ? ? 118.30 114.60 3.70 0.60 N 114 1 C4 B DT 33 ? ? C5 B DT 33 ? ? C6 B DT 33 ? ? 122.37 118.00 4.37 0.60 N 115 1 N3 B DT 33 ? ? C2 B DT 33 ? ? O2 B DT 33 ? ? 114.66 122.30 -7.64 0.60 N 116 1 C6 B DT 33 ? ? C5 B DT 33 ? ? C7 B DT 33 ? ? 118.83 122.90 -4.07 0.60 N 117 1 "C3'" B DT 33 ? ? "O3'" B DT 33 ? ? P B DC 34 ? ? 127.18 119.70 7.48 1.20 Y 118 1 "C4'" B DC 34 ? ? "C3'" B DC 34 ? ? "O3'" B DC 34 ? ? 125.50 112.30 13.20 2.00 N 119 1 "C3'" B DC 34 ? ? "C2'" B DC 34 ? ? "C1'" B DC 34 ? ? 111.80 102.50 9.30 1.20 N 120 1 "O4'" B DC 34 ? ? "C1'" B DC 34 ? ? "C2'" B DC 34 ? ? 99.74 105.90 -6.16 0.80 N 121 1 "O4'" B DC 34 ? ? "C1'" B DC 34 ? ? N1 B DC 34 ? ? 114.48 108.30 6.18 0.30 N 122 1 "C3'" B DC 34 ? ? "O3'" B DC 34 ? ? P B DA 35 ? ? 141.52 119.70 21.82 1.20 Y 123 1 "C4'" B DA 35 ? ? "C3'" B DA 35 ? ? "C2'" B DA 35 ? ? 95.88 102.20 -6.32 0.70 N 124 1 "C3'" B DA 35 ? ? "C2'" B DA 35 ? ? "C1'" B DA 35 ? ? 109.81 102.50 7.31 1.20 N 125 1 N1 B DT 36 ? ? C2 B DT 36 ? ? N3 B DT 36 ? ? 118.97 114.60 4.37 0.60 N 126 1 C4 B DT 36 ? ? C5 B DT 36 ? ? C6 B DT 36 ? ? 122.78 118.00 4.78 0.60 N 127 1 N3 B DT 36 ? ? C2 B DT 36 ? ? O2 B DT 36 ? ? 118.17 122.30 -4.13 0.60 N 128 1 C6 B DT 36 ? ? C5 B DT 36 ? ? C7 B DT 36 ? ? 118.45 122.90 -4.45 0.60 N 129 1 C2 B DA 37 ? ? N3 B DA 37 ? ? C4 B DA 37 ? ? 107.15 110.60 -3.45 0.50 N 130 1 "O4'" B DG 38 ? ? "C1'" B DG 38 ? ? "C2'" B DG 38 ? ? 94.79 105.90 -11.11 0.80 N 131 1 "C3'" B DG 38 ? ? "O3'" B DG 38 ? ? P B DG 39 ? ? 132.16 119.70 12.46 1.20 Y 132 1 "C5'" B DG 39 ? ? "C4'" B DG 39 ? ? "C3'" B DG 39 ? ? 101.08 114.10 -13.02 1.80 N 133 1 "C5'" B DG 39 ? ? "C4'" B DG 39 ? ? "O4'" B DG 39 ? ? 122.40 109.80 12.60 1.10 N 134 1 "O4'" B DG 39 ? ? "C1'" B DG 39 ? ? "C2'" B DG 39 ? ? 110.79 106.80 3.99 0.50 N 135 1 "O4'" B DG 39 ? ? "C1'" B DG 39 ? ? N9 B DG 39 ? ? 110.55 108.30 2.25 0.30 N 136 1 "C4'" B DA 40 ? ? "C3'" B DA 40 ? ? "C2'" B DA 40 ? ? 95.32 102.20 -6.88 0.70 N 137 1 "O4'" B DA 40 ? ? "C1'" B DA 40 ? ? "C2'" B DA 40 ? ? 95.65 105.90 -10.25 0.80 N 138 1 "O4'" B DA 40 ? ? "C1'" B DA 40 ? ? N9 B DA 40 ? ? 113.24 108.30 4.94 0.30 N 139 1 NE C ARG 241 ? ? CZ C ARG 241 ? ? NH2 C ARG 241 ? ? 114.92 120.30 -5.38 0.50 N 140 1 NE C ARG 249 ? ? CZ C ARG 249 ? ? NH1 C ARG 249 ? ? 123.78 120.30 3.48 0.50 N 141 1 NE C ARG 249 ? ? CZ C ARG 249 ? ? NH2 C ARG 249 ? ? 116.24 120.30 -4.06 0.50 N 142 1 CG C MET 250 ? ? SD C MET 250 ? ? CE C MET 250 ? ? 112.77 100.20 12.57 1.60 N 143 1 CA C LYS 263 ? ? C C LYS 263 ? ? N C ASN 264 ? ? 130.73 117.20 13.53 2.20 Y 144 1 CA C VAL 278 ? ? C C VAL 278 ? ? N C GLY 279 ? ? 133.11 116.20 16.91 2.00 Y 145 1 O C VAL 278 ? ? C C VAL 278 ? ? N C GLY 279 ? ? 110.69 123.20 -12.51 1.70 Y 146 1 NE C ARG 281 ? ? CZ C ARG 281 ? ? NH1 C ARG 281 ? ? 123.40 120.30 3.10 0.50 N 147 1 N D LYS 225 ? ? CA D LYS 225 ? ? C D LYS 225 ? ? 127.88 111.00 16.88 2.70 N 148 1 NE D ARG 232 ? ? CZ D ARG 232 ? ? NH1 D ARG 232 ? ? 123.88 120.30 3.58 0.50 N 149 1 NE D ARG 234 ? ? CZ D ARG 234 ? ? NH1 D ARG 234 ? ? 123.58 120.30 3.28 0.50 N 150 1 NE D ARG 234 ? ? CZ D ARG 234 ? ? NH2 D ARG 234 ? ? 114.57 120.30 -5.73 0.50 N 151 1 NE D ARG 240 ? ? CZ D ARG 240 ? ? NH1 D ARG 240 ? ? 123.57 120.30 3.27 0.50 N 152 1 CB D ARG 243 ? ? CG D ARG 243 ? ? CD D ARG 243 ? ? 128.01 111.60 16.41 2.60 N 153 1 NE D ARG 243 ? ? CZ D ARG 243 ? ? NH1 D ARG 243 ? ? 124.97 120.30 4.67 0.50 N 154 1 O D ARG 243 ? ? C D ARG 243 ? ? N D ALA 244 ? ? 112.89 122.70 -9.81 1.60 Y 155 1 NE D ARG 245 ? ? CZ D ARG 245 ? ? NH1 D ARG 245 ? ? 124.69 120.30 4.39 0.50 N 156 1 NE D ARG 245 ? ? CZ D ARG 245 ? ? NH2 D ARG 245 ? ? 116.94 120.30 -3.36 0.50 N 157 1 NE D ARG 249 ? ? CZ D ARG 249 ? ? NH1 D ARG 249 ? ? 127.07 120.30 6.77 0.50 N 158 1 CA D SER 262 ? ? CB D SER 262 ? ? OG D SER 262 ? ? 90.63 111.20 -20.57 2.70 N 159 1 NE D ARG 273 ? ? CZ D ARG 273 ? ? NH2 D ARG 273 ? ? 116.20 120.30 -4.10 0.50 N 160 1 N D GLU 280 ? ? CA D GLU 280 ? ? C D GLU 280 ? ? 129.51 111.00 18.51 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL C 278 ? ? 177.79 -93.20 2 1 LYS D 225 ? ? -139.91 -154.80 3 1 ASP D 226 ? ? -92.16 50.73 4 1 VAL D 278 ? ? -102.84 -85.44 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 40 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.058 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 224 ? C MET 1 2 1 Y 1 D ARG 281 ? D ARG 58 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PRO N N N N 357 PRO CA C N S 358 PRO C C N N 359 PRO O O N N 360 PRO CB C N N 361 PRO CG C N N 362 PRO CD C N N 363 PRO OXT O N N 364 PRO H H N N 365 PRO HA H N N 366 PRO HB2 H N N 367 PRO HB3 H N N 368 PRO HG2 H N N 369 PRO HG3 H N N 370 PRO HD2 H N N 371 PRO HD3 H N N 372 PRO HXT H N N 373 SER N N N N 374 SER CA C N S 375 SER C C N N 376 SER O O N N 377 SER CB C N N 378 SER OG O N N 379 SER OXT O N N 380 SER H H N N 381 SER H2 H N N 382 SER HA H N N 383 SER HB2 H N N 384 SER HB3 H N N 385 SER HG H N N 386 SER HXT H N N 387 THR N N N N 388 THR CA C N S 389 THR C C N N 390 THR O O N N 391 THR CB C N R 392 THR OG1 O N N 393 THR CG2 C N N 394 THR OXT O N N 395 THR H H N N 396 THR H2 H N N 397 THR HA H N N 398 THR HB H N N 399 THR HG1 H N N 400 THR HG21 H N N 401 THR HG22 H N N 402 THR HG23 H N N 403 THR HXT H N N 404 TYR N N N N 405 TYR CA C N S 406 TYR C C N N 407 TYR O O N N 408 TYR CB C N N 409 TYR CG C Y N 410 TYR CD1 C Y N 411 TYR CD2 C Y N 412 TYR CE1 C Y N 413 TYR CE2 C Y N 414 TYR CZ C Y N 415 TYR OH O N N 416 TYR OXT O N N 417 TYR H H N N 418 TYR H2 H N N 419 TYR HA H N N 420 TYR HB2 H N N 421 TYR HB3 H N N 422 TYR HD1 H N N 423 TYR HD2 H N N 424 TYR HE1 H N N 425 TYR HE2 H N N 426 TYR HH H N N 427 TYR HXT H N N 428 VAL N N N N 429 VAL CA C N S 430 VAL C C N N 431 VAL O O N N 432 VAL CB C N N 433 VAL CG1 C N N 434 VAL CG2 C N N 435 VAL OXT O N N 436 VAL H H N N 437 VAL H2 H N N 438 VAL HA H N N 439 VAL HB H N N 440 VAL HG11 H N N 441 VAL HG12 H N N 442 VAL HG13 H N N 443 VAL HG21 H N N 444 VAL HG22 H N N 445 VAL HG23 H N N 446 VAL HXT H N N 447 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PRO N CA sing N N 352 PRO N CD sing N N 353 PRO N H sing N N 354 PRO CA C sing N N 355 PRO CA CB sing N N 356 PRO CA HA sing N N 357 PRO C O doub N N 358 PRO C OXT sing N N 359 PRO CB CG sing N N 360 PRO CB HB2 sing N N 361 PRO CB HB3 sing N N 362 PRO CG CD sing N N 363 PRO CG HG2 sing N N 364 PRO CG HG3 sing N N 365 PRO CD HD2 sing N N 366 PRO CD HD3 sing N N 367 PRO OXT HXT sing N N 368 SER N CA sing N N 369 SER N H sing N N 370 SER N H2 sing N N 371 SER CA C sing N N 372 SER CA CB sing N N 373 SER CA HA sing N N 374 SER C O doub N N 375 SER C OXT sing N N 376 SER CB OG sing N N 377 SER CB HB2 sing N N 378 SER CB HB3 sing N N 379 SER OG HG sing N N 380 SER OXT HXT sing N N 381 THR N CA sing N N 382 THR N H sing N N 383 THR N H2 sing N N 384 THR CA C sing N N 385 THR CA CB sing N N 386 THR CA HA sing N N 387 THR C O doub N N 388 THR C OXT sing N N 389 THR CB OG1 sing N N 390 THR CB CG2 sing N N 391 THR CB HB sing N N 392 THR OG1 HG1 sing N N 393 THR CG2 HG21 sing N N 394 THR CG2 HG22 sing N N 395 THR CG2 HG23 sing N N 396 THR OXT HXT sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 VAL N CA sing N N 422 VAL N H sing N N 423 VAL N H2 sing N N 424 VAL CA C sing N N 425 VAL CA CB sing N N 426 VAL CA HA sing N N 427 VAL C O doub N N 428 VAL C OXT sing N N 429 VAL CB CG1 sing N N 430 VAL CB CG2 sing N N 431 VAL CB HB sing N N 432 VAL CG1 HG11 sing N N 433 VAL CG1 HG12 sing N N 434 VAL CG1 HG13 sing N N 435 VAL CG2 HG21 sing N N 436 VAL CG2 HG22 sing N N 437 VAL CG2 HG23 sing N N 438 VAL OXT HXT sing N N 439 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1YSA 'double helix' 1YSA 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 20 1_555 -0.418 -0.409 0.303 -7.193 -10.577 -8.166 1 A_DT2:DA40_B A 2 ? B 40 ? 20 1 1 A DC 3 1_555 B DG 19 1_555 -0.637 -0.188 -0.492 3.972 -15.752 2.361 2 A_DC3:DG39_B A 3 ? B 39 ? 19 1 1 A DC 4 1_555 B DG 18 1_555 0.971 -0.487 0.397 -0.783 -2.397 -6.879 3 A_DC4:DG38_B A 4 ? B 38 ? 19 1 1 A DT 5 1_555 B DA 17 1_555 -1.039 -0.402 -0.427 4.143 -9.732 -11.796 4 A_DT5:DA37_B A 5 ? B 37 ? 20 1 1 A DA 6 1_555 B DT 16 1_555 0.435 0.302 -0.001 -8.287 -12.372 5.104 5 A_DA6:DT36_B A 6 ? B 36 ? 20 1 1 A DT 7 1_555 B DA 15 1_555 -0.373 0.397 -0.001 11.712 -8.318 2.643 6 A_DT7:DA35_B A 7 ? B 35 ? ? ? 1 A DG 8 1_555 B DC 14 1_555 0.277 -0.201 0.994 9.439 -11.012 4.170 7 A_DG8:DC34_B A 8 ? B 34 ? 19 1 1 A DA 9 1_555 B DT 13 1_555 0.563 -0.223 0.251 -4.182 -20.288 -4.463 8 A_DA9:DT33_B A 9 ? B 33 ? 20 1 1 A DC 10 1_555 B DG 12 1_555 -0.941 -0.151 -0.198 2.208 -11.569 -1.378 9 A_DC10:DG32_B A 10 ? B 32 ? 19 1 1 A DT 11 1_555 B DA 11 1_555 -1.092 -0.121 0.127 2.110 -6.368 -1.679 10 A_DT11:DA31_B A 11 ? B 31 ? 20 1 1 A DC 12 1_555 B DG 10 1_555 -0.030 -0.152 -0.020 -14.315 -0.513 2.284 11 A_DC12:DG30_B A 12 ? B 30 ? 19 1 1 A DA 13 1_555 B DT 9 1_555 0.053 0.226 0.513 -7.243 -4.008 -0.088 12 A_DA13:DT29_B A 13 ? B 29 ? 20 1 1 A DT 14 1_555 B DA 8 1_555 -0.127 -0.296 0.551 0.471 -4.829 6.077 13 A_DT14:DA28_B A 14 ? B 28 ? 20 1 1 A DC 15 1_555 B DG 7 1_555 0.224 -0.347 -0.055 5.344 -10.599 -9.106 14 A_DC15:DG27_B A 15 ? B 27 ? 19 1 1 A DC 16 1_555 B DG 6 1_555 -0.274 0.350 0.248 -16.724 13.360 0.080 15 A_DC16:DG26_B A 16 ? B 26 ? 19 1 1 A DA 17 1_555 B DT 5 1_555 -0.201 -0.173 -0.097 -3.438 -12.304 -2.689 16 A_DA17:DT25_B A 17 ? B 25 ? 20 1 1 A DG 18 1_555 B DC 4 1_555 0.034 -0.213 0.043 -7.501 -11.510 -8.342 17 A_DG18:DC24_B A 18 ? B 24 ? 19 1 1 A DT 19 1_555 B DA 1 1_555 -0.010 -1.135 0.243 -0.150 8.933 -179.323 18 A_DT19:DA21_B A 19 ? B 21 ? 21 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 20 1_555 A DC 3 1_555 B DG 19 1_555 0.111 -0.478 3.010 2.892 -5.101 25.448 0.244 0.493 3.040 -11.387 -6.455 26.104 1 AA_DT2DC3:DG39DA40_BB A 2 ? B 40 ? A 3 ? B 39 ? 1 A DC 3 1_555 B DG 19 1_555 A DC 4 1_555 B DG 18 1_555 -0.115 -0.410 3.582 -5.424 5.538 40.830 -1.220 -0.467 3.487 7.852 7.690 41.529 2 AA_DC3DC4:DG38DG39_BB A 3 ? B 39 ? A 4 ? B 38 ? 1 A DC 4 1_555 B DG 18 1_555 A DT 5 1_555 B DA 17 1_555 -0.472 -0.791 2.987 7.236 5.535 23.123 -3.285 2.988 2.475 13.171 -17.219 24.831 3 AA_DC4DT5:DA37DG38_BB A 4 ? B 38 ? A 5 ? B 37 ? 1 A DT 5 1_555 B DA 17 1_555 A DA 6 1_555 B DT 16 1_555 0.638 0.792 3.913 -1.928 5.452 49.640 0.461 -0.924 3.948 6.468 2.288 49.954 4 AA_DT5DA6:DT36DA37_BB A 5 ? B 37 ? A 6 ? B 36 ? 1 A DA 6 1_555 B DT 16 1_555 A DT 7 1_555 B DA 15 1_555 -0.312 -0.744 2.750 -1.354 0.526 24.812 -1.863 0.382 2.747 1.222 3.149 24.854 5 AA_DA6DT7:DA35DT36_BB A 6 ? B 36 ? A 7 ? B 35 ? 1 A DT 7 1_555 B DA 15 1_555 A DG 8 1_555 B DC 14 1_555 -0.122 -0.040 3.137 -8.809 -0.497 42.982 -0.009 -0.643 3.102 -0.669 11.873 43.836 6 AA_DT7DG8:DC34DA35_BB A 7 ? B 35 ? A 8 ? B 34 ? 1 A DG 8 1_555 B DC 14 1_555 A DA 9 1_555 B DT 13 1_555 0.025 -0.630 3.568 7.064 0.445 40.362 -0.954 0.807 3.516 0.639 -10.143 40.953 7 AA_DG8DA9:DT33DC34_BB A 8 ? B 34 ? A 9 ? B 33 ? 1 A DA 9 1_555 B DT 13 1_555 A DC 10 1_555 B DG 12 1_555 -0.134 -1.024 3.064 3.095 -0.009 25.744 -2.280 1.099 3.028 -0.020 -6.915 25.926 8 AA_DA9DC10:DG32DT33_BB A 9 ? B 33 ? A 10 ? B 32 ? 1 A DC 10 1_555 B DG 12 1_555 A DT 11 1_555 B DA 11 1_555 0.441 -0.214 3.165 0.469 3.779 37.606 -0.800 -0.622 3.134 5.844 -0.725 37.792 9 AA_DC10DT11:DA31DG32_BB A 10 ? B 32 ? A 11 ? B 31 ? 1 A DT 11 1_555 B DA 11 1_555 A DC 12 1_555 B DG 10 1_555 0.007 0.095 3.819 -0.627 7.720 38.564 -0.934 -0.098 3.768 11.547 0.938 39.305 10 AA_DT11DC12:DG30DA31_BB A 11 ? B 31 ? A 12 ? B 30 ? 1 A DC 12 1_555 B DG 10 1_555 A DA 13 1_555 B DT 9 1_555 0.099 0.490 3.290 -6.271 9.142 34.243 -0.543 -1.077 3.244 15.045 10.321 35.941 11 AA_DC12DA13:DT29DG30_BB A 12 ? B 30 ? A 13 ? B 29 ? 1 A DA 13 1_555 B DT 9 1_555 A DT 14 1_555 B DA 8 1_555 0.802 -1.029 3.121 -0.308 -4.092 35.460 -1.103 -1.351 3.209 -6.691 0.503 35.689 12 AA_DA13DT14:DA28DT29_BB A 13 ? B 29 ? A 14 ? B 28 ? 1 A DT 14 1_555 B DA 8 1_555 A DC 15 1_555 B DG 7 1_555 -0.355 -0.543 3.092 3.687 -3.307 31.550 -0.419 1.279 3.072 -6.035 -6.729 31.927 13 AA_DT14DC15:DG27DA28_BB A 14 ? B 28 ? A 15 ? B 27 ? 1 A DC 15 1_555 B DG 7 1_555 A DC 16 1_555 B DG 6 1_555 0.724 -0.591 3.954 -0.777 2.243 37.694 -1.260 -1.239 3.899 3.467 1.201 37.766 14 AA_DC15DC16:DG26DG27_BB A 15 ? B 27 ? A 16 ? B 26 ? 1 A DC 16 1_555 B DG 6 1_555 A DA 17 1_555 B DT 5 1_555 -0.779 0.119 3.160 1.534 1.812 31.766 -0.101 1.688 3.122 3.304 -2.797 31.852 15 AA_DC16DA17:DT25DG26_BB A 16 ? B 26 ? A 17 ? B 25 ? 1 A DA 17 1_555 B DT 5 1_555 A DG 18 1_555 B DC 4 1_555 -0.687 -0.050 3.439 -6.525 6.895 36.821 -1.018 0.166 3.442 10.700 10.125 37.984 16 AA_DA17DG18:DC24DT25_BB A 17 ? B 25 ? A 18 ? B 24 ? 1 A DG 18 1_555 B DC 4 1_555 A DT 19 1_555 B DA 1 1_555 -0.099 -0.666 3.315 -3.349 -3.129 120.709 -0.354 0.025 3.326 -1.800 1.927 120.762 17 AA_DG18DT19:DA21DC24_BB A 18 ? B 24 ? A 19 ? B 21 ? # _atom_sites.entry_id 1YSA _atom_sites.fract_transf_matrix[1][1] 0.020354 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011294 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016880 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text ;TWO ADENINES, B 22 AND B 23, ARE NEAR THE 5-PRIME END OF DNA CHAIN B AND ARE LOOPED OUT OF THE DNA HELIX. THIS CONFORMATION IS PRESENT IN CRYSTALS THAT WERE SOAKED IN 35% (VOL/VOL) POLYETHYLENE GLYCOL MW 400, FOLLOWED BY RAPID FREEZING AND X-RAY DATA COLLECTION AT -155 DEGREES CENTIGRADE. ; # loop_ _atom_type.symbol C N O P S # loop_