HEADER LYASE 08-FEB-05 1YSL TITLE CRYSTAL STRUCTURE OF HMG-COA SYNTHASE FROM ENTEROCOCCUS FAECALIS WITH TITLE 2 ACETOACETYL-COA LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-COA SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.3.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HMG-COA SYNTHASE; COMPND 8 CHAIN: B; COMPND 9 EC: 4.1.3.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 11 ORGANISM_TAXID: 1351; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS THIOLASE FAMILY, COENZYMEA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.N.STEUSSY,A.A.VARTIA,J.W.BURGNER II,A.SUTHERLIN,V.W.RODWELL, AUTHOR 2 C.V.STAUFFACHER REVDAT 5 23-AUG-23 1YSL 1 REMARK SEQADV LINK REVDAT 4 16-NOV-11 1YSL 1 HETATM REVDAT 3 13-JUL-11 1YSL 1 VERSN REVDAT 2 24-FEB-09 1YSL 1 VERSN REVDAT 1 08-NOV-05 1YSL 0 JRNL AUTH C.N.STEUSSY,A.A.VARTIA,J.W.BURGNER II,A.SUTHERLIN, JRNL AUTH 2 V.W.RODWELL,C.V.STAUFFACHER JRNL TITL X-RAY CRYSTAL STRUCTURES OF HMG-COA SYNTHASE FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS AND A COMPLEX WITH ITS SECOND JRNL TITL 3 SUBSTRATE/INHIBITOR ACETOACETYL-COA. JRNL REF BIOCHEMISTRY V. 44 14256 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16245942 JRNL DOI 10.1021/BI051487X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 63975.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1X9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMONIUM SULFATE, 100 MM MES, PH REMARK 280 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.50650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.39950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.50650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.39950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.50650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.39950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.50650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.39950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMODIMER THAT IS BELIEVED REMARK 300 TO BE THE BIOLOGICALLY ACTIVE UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 700 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND THE ACETOACETYL MOLECULE, AAE IS COVALENTLY ATTACHED TO REMARK 400 CYSTEINE B111 WITH 50% OCCUPANCY. THE REMAINING PORTION OF REMARK 400 CYSTEINE B111 IS OXIDIZED TO SULFONATE (CSD). CYSTEINE A 111 IS REMARK 400 ENTIRELY OXIDIZED (CSD). REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 370 NH1 ARG B 382 1.79 REMARK 500 OG SER B 9 O HOH B 797 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 9.38 -49.42 REMARK 500 GLU A 109 65.27 -177.80 REMARK 500 ALA A 110 -136.64 50.96 REMARK 500 ALA A 110 -136.55 50.96 REMARK 500 GLU A 173 41.49 -105.06 REMARK 500 VAL A 273 -53.51 -124.30 REMARK 500 TYR A 277 -111.84 50.74 REMARK 500 THR A 377 -16.25 75.58 REMARK 500 GLU B 109 67.57 -169.80 REMARK 500 ALA B 110 -131.21 44.05 REMARK 500 ALA B 110 -131.60 44.05 REMARK 500 ILE B 168 -62.93 -120.71 REMARK 500 VAL B 273 -51.29 -124.56 REMARK 500 TYR B 277 -112.28 52.45 REMARK 500 THR B 377 -9.84 75.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 282 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CSD B 111 12.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AAE B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X9E RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF HMG-COA SYNTHASE FROM ENTEROCOCCUS FAECALIS DBREF 1YSL A 1 383 GB 9937383 AAG02438 1 383 DBREF 1YSL B 1 383 GB 9937383 AAG02438 1 383 SEQADV 1YSL MET A -18 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -17 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -16 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -15 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -14 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -13 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -12 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -11 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A -10 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -9 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -8 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -7 GB 9937383 EXPRESSION TAG SEQADV 1YSL LEU A -6 GB 9937383 EXPRESSION TAG SEQADV 1YSL VAL A -5 GB 9937383 EXPRESSION TAG SEQADV 1YSL PRO A -4 GB 9937383 EXPRESSION TAG SEQADV 1YSL ARG A -3 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY A -2 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER A -1 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS A 0 GB 9937383 EXPRESSION TAG SEQADV 1YSL MET B -18 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -17 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -16 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -15 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -14 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -13 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -12 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -11 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B -10 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -9 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -8 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -7 GB 9937383 EXPRESSION TAG SEQADV 1YSL LEU B -6 GB 9937383 EXPRESSION TAG SEQADV 1YSL VAL B -5 GB 9937383 EXPRESSION TAG SEQADV 1YSL PRO B -4 GB 9937383 EXPRESSION TAG SEQADV 1YSL ARG B -3 GB 9937383 EXPRESSION TAG SEQADV 1YSL GLY B -2 GB 9937383 EXPRESSION TAG SEQADV 1YSL SER B -1 GB 9937383 EXPRESSION TAG SEQADV 1YSL HIS B 0 GB 9937383 EXPRESSION TAG SEQADV 1YSL CSD B 111 GB 9937383 CYS 111 MICROHETEROGENEITY SEQRES 1 A 402 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 402 VAL PRO ARG GLY SER HIS MET THR ILE GLY ILE ASP LYS SEQRES 3 A 402 ILE SER PHE PHE VAL PRO PRO TYR TYR ILE ASP MET THR SEQRES 4 A 402 ALA LEU ALA GLU ALA ARG ASN VAL ASP PRO GLY LYS PHE SEQRES 5 A 402 HIS ILE GLY ILE GLY GLN ASP GLN MET ALA VAL ASN PRO SEQRES 6 A 402 ILE SER GLN ASP ILE VAL THR PHE ALA ALA ASN ALA ALA SEQRES 7 A 402 GLU ALA ILE LEU THR LYS GLU ASP LYS GLU ALA ILE ASP SEQRES 8 A 402 MET VAL ILE VAL GLY THR GLU SER SER ILE ASP GLU SER SEQRES 9 A 402 LYS ALA ALA ALA VAL VAL LEU HIS ARG LEU MET GLY ILE SEQRES 10 A 402 GLN PRO PHE ALA ARG SER PHE GLU ILE LYS GLU ALA CSD SEQRES 11 A 402 TYR GLY ALA THR ALA GLY LEU GLN LEU ALA LYS ASN HIS SEQRES 12 A 402 VAL ALA LEU HIS PRO ASP LYS LYS VAL LEU VAL VAL ALA SEQRES 13 A 402 ALA ASP ILE ALA LYS TYR GLY LEU ASN SER GLY GLY GLU SEQRES 14 A 402 PRO THR GLN GLY ALA GLY ALA VAL ALA MET LEU VAL ALA SEQRES 15 A 402 SER GLU PRO ARG ILE LEU ALA LEU LYS GLU ASP ASN VAL SEQRES 16 A 402 MET LEU THR GLN ASP ILE TYR ASP PHE TRP ARG PRO THR SEQRES 17 A 402 GLY HIS PRO TYR PRO MET VAL ASP GLY PRO LEU SER ASN SEQRES 18 A 402 GLU THR TYR ILE GLN SER PHE ALA GLN VAL TRP ASP GLU SEQRES 19 A 402 HIS LYS LYS ARG THR GLY LEU ASP PHE ALA ASP TYR ASP SEQRES 20 A 402 ALA LEU ALA PHE HIS ILE PRO TYR THR LYS MET GLY LYS SEQRES 21 A 402 LYS ALA LEU LEU ALA LYS ILE SER ASP GLN THR GLU ALA SEQRES 22 A 402 GLU GLN GLU ARG ILE LEU ALA ARG TYR GLU GLU SER ILE SEQRES 23 A 402 ILE TYR SER ARG ARG VAL GLY ASN LEU TYR THR GLY SER SEQRES 24 A 402 LEU TYR LEU GLY LEU ILE SER LEU LEU GLU ASN ALA THR SEQRES 25 A 402 THR LEU THR ALA GLY ASN GLN ILE GLY LEU PHE SER TYR SEQRES 26 A 402 GLY SER GLY ALA VAL ALA GLU PHE PHE THR GLY GLU LEU SEQRES 27 A 402 VAL ALA GLY TYR GLN ASN HIS LEU GLN LYS GLU THR HIS SEQRES 28 A 402 LEU ALA LEU LEU ASP ASN ARG THR GLU LEU SER ILE ALA SEQRES 29 A 402 GLU TYR GLU ALA MET PHE ALA GLU THR LEU ASP THR ASP SEQRES 30 A 402 ILE ASP GLN THR LEU GLU ASP GLU LEU LYS TYR SER ILE SEQRES 31 A 402 SER ALA ILE ASN ASN THR VAL ARG SER TYR ARG ASN SEQRES 1 B 402 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 402 VAL PRO ARG GLY SER HIS MET THR ILE GLY ILE ASP LYS SEQRES 3 B 402 ILE SER PHE PHE VAL PRO PRO TYR TYR ILE ASP MET THR SEQRES 4 B 402 ALA LEU ALA GLU ALA ARG ASN VAL ASP PRO GLY LYS PHE SEQRES 5 B 402 HIS ILE GLY ILE GLY GLN ASP GLN MET ALA VAL ASN PRO SEQRES 6 B 402 ILE SER GLN ASP ILE VAL THR PHE ALA ALA ASN ALA ALA SEQRES 7 B 402 GLU ALA ILE LEU THR LYS GLU ASP LYS GLU ALA ILE ASP SEQRES 8 B 402 MET VAL ILE VAL GLY THR GLU SER SER ILE ASP GLU SER SEQRES 9 B 402 LYS ALA ALA ALA VAL VAL LEU HIS ARG LEU MET GLY ILE SEQRES 10 B 402 GLN PRO PHE ALA ARG SER PHE GLU ILE LYS GLU ALA CYS SEQRES 11 B 402 TYR GLY ALA THR ALA GLY LEU GLN LEU ALA LYS ASN HIS SEQRES 12 B 402 VAL ALA LEU HIS PRO ASP LYS LYS VAL LEU VAL VAL ALA SEQRES 13 B 402 ALA ASP ILE ALA LYS TYR GLY LEU ASN SER GLY GLY GLU SEQRES 14 B 402 PRO THR GLN GLY ALA GLY ALA VAL ALA MET LEU VAL ALA SEQRES 15 B 402 SER GLU PRO ARG ILE LEU ALA LEU LYS GLU ASP ASN VAL SEQRES 16 B 402 MET LEU THR GLN ASP ILE TYR ASP PHE TRP ARG PRO THR SEQRES 17 B 402 GLY HIS PRO TYR PRO MET VAL ASP GLY PRO LEU SER ASN SEQRES 18 B 402 GLU THR TYR ILE GLN SER PHE ALA GLN VAL TRP ASP GLU SEQRES 19 B 402 HIS LYS LYS ARG THR GLY LEU ASP PHE ALA ASP TYR ASP SEQRES 20 B 402 ALA LEU ALA PHE HIS ILE PRO TYR THR LYS MET GLY LYS SEQRES 21 B 402 LYS ALA LEU LEU ALA LYS ILE SER ASP GLN THR GLU ALA SEQRES 22 B 402 GLU GLN GLU ARG ILE LEU ALA ARG TYR GLU GLU SER ILE SEQRES 23 B 402 ILE TYR SER ARG ARG VAL GLY ASN LEU TYR THR GLY SER SEQRES 24 B 402 LEU TYR LEU GLY LEU ILE SER LEU LEU GLU ASN ALA THR SEQRES 25 B 402 THR LEU THR ALA GLY ASN GLN ILE GLY LEU PHE SER TYR SEQRES 26 B 402 GLY SER GLY ALA VAL ALA GLU PHE PHE THR GLY GLU LEU SEQRES 27 B 402 VAL ALA GLY TYR GLN ASN HIS LEU GLN LYS GLU THR HIS SEQRES 28 B 402 LEU ALA LEU LEU ASP ASN ARG THR GLU LEU SER ILE ALA SEQRES 29 B 402 GLU TYR GLU ALA MET PHE ALA GLU THR LEU ASP THR ASP SEQRES 30 B 402 ILE ASP GLN THR LEU GLU ASP GLU LEU LYS TYR SER ILE SEQRES 31 B 402 SER ALA ILE ASN ASN THR VAL ARG SER TYR ARG ASN MODRES 1YSL CSD A 111 CYS 3-SULFINOALANINE MODRES 1YSL CSD B 111 CYS 3-SULFINOALANINE HET CSD A 111 16 HET CSD B 111 8 HET SO4 A 602 5 HET GOL A 604 6 HET SO4 B 603 5 HET COA B 601 48 HET AAE B 611 6 HET GOL B 605 6 HETNAM CSD 3-SULFINOALANINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETNAM AAE ACETOACETIC ACID HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 COA C21 H36 N7 O16 P3 S FORMUL 7 AAE C4 H6 O3 FORMUL 9 HOH *522(H2 O) HELIX 1 1 MET A 19 ARG A 26 1 8 HELIX 2 2 ASP A 50 ALA A 61 1 12 HELIX 3 3 THR A 64 ALA A 70 1 7 HELIX 4 4 ALA A 87 MET A 96 1 10 HELIX 5 5 GLU A 109 CSD A 111 5 3 HELIX 6 6 TYR A 112 HIS A 128 1 17 HELIX 7 7 GLY A 149 GLN A 153 5 5 HELIX 8 8 ASP A 197 GLY A 221 1 25 HELIX 9 9 ASP A 223 TYR A 227 5 5 HELIX 10 10 TYR A 236 SER A 249 1 14 HELIX 11 11 THR A 252 ILE A 267 1 16 HELIX 12 12 ILE A 268 VAL A 273 5 6 HELIX 13 13 LEU A 276 THR A 278 5 3 HELIX 14 14 GLY A 279 ALA A 292 1 14 HELIX 15 15 GLY A 322 LEU A 327 5 6 HELIX 16 16 GLN A 328 ASN A 338 1 11 HELIX 17 17 SER A 343 GLU A 353 1 11 HELIX 18 18 MET B 19 ARG B 26 1 8 HELIX 19 19 ASP B 29 ILE B 35 1 7 HELIX 20 20 ASP B 50 ALA B 61 1 12 HELIX 21 21 THR B 64 ALA B 70 1 7 HELIX 22 22 ALA B 87 MET B 96 1 10 HELIX 23 23 GLU B 109 CYS B 111 5 3 HELIX 24 24 TYR B 112 HIS B 128 1 17 HELIX 25 25 GLY B 149 GLN B 153 5 5 HELIX 26 26 ASP B 197 GLY B 221 1 25 HELIX 27 27 ASP B 223 TYR B 227 5 5 HELIX 28 28 TYR B 236 SER B 249 1 14 HELIX 29 29 THR B 252 ILE B 267 1 16 HELIX 30 30 TYR B 269 VAL B 273 5 5 HELIX 31 31 LEU B 276 THR B 278 5 3 HELIX 32 32 GLY B 279 ALA B 292 1 14 HELIX 33 33 GLY B 322 HIS B 326 5 5 HELIX 34 34 GLN B 328 ASN B 338 1 11 HELIX 35 35 SER B 343 GLU B 353 1 11 SHEET 1 A16 VAL A 176 THR A 179 0 SHEET 2 A16 VAL A 311 LEU A 319 -1 O ALA A 312 N LEU A 178 SHEET 3 A16 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 4 A16 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 5 A16 GLY A 154 SER A 164 -1 O ALA A 159 N SER A 9 SHEET 6 A16 LYS A 132 ALA A 141 -1 N VAL A 133 O VAL A 162 SHEET 7 A16 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 8 A16 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 9 A16 ARG B 103 LYS B 108 -1 O LYS B 108 N GLU A 106 SHEET 10 A16 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 11 A16 LYS B 132 ALA B 141 1 O VAL B 136 N ILE B 75 SHEET 12 A16 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 13 A16 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 14 A16 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 15 A16 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 16 A16 VAL B 176 THR B 179 -1 N LEU B 178 O ALA B 312 SHEET 1 B18 ALA A 229 PHE A 232 0 SHEET 2 B18 GLN A 300 GLY A 307 1 O GLY A 302 N ALA A 231 SHEET 3 B18 VAL A 311 LEU A 319 -1 O GLY A 317 N ILE A 301 SHEET 4 B18 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 5 B18 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 6 B18 GLY A 154 SER A 164 -1 O ALA A 159 N SER A 9 SHEET 7 B18 LYS A 132 ALA A 141 -1 N VAL A 133 O VAL A 162 SHEET 8 B18 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 9 B18 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 10 B18 ARG B 103 LYS B 108 -1 O LYS B 108 N GLU A 106 SHEET 11 B18 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 12 B18 LYS B 132 ALA B 141 1 O VAL B 136 N ILE B 75 SHEET 13 B18 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 14 B18 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 15 B18 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 16 B18 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 17 B18 GLN B 300 GLY B 307 -1 N ILE B 301 O GLY B 317 SHEET 18 B18 ALA B 229 PHE B 232 1 N ALA B 231 O GLY B 302 SHEET 1 C 3 GLN A 41 VAL A 44 0 SHEET 2 C 3 TYR A 15 ASP A 18 -1 N ILE A 17 O MET A 42 SHEET 3 C 3 THR A 340 GLU A 341 1 O THR A 340 N TYR A 16 SHEET 1 D 2 PHE A 185 TRP A 186 0 SHEET 2 D 2 MET A 195 VAL A 196 -1 O MET A 195 N TRP A 186 SHEET 1 E 3 GLN A 361 THR A 362 0 SHEET 2 E 3 ILE A 371 ASN A 375 -1 O ILE A 374 N GLN A 361 SHEET 3 E 3 VAL A 378 TYR A 381 -1 O SER A 380 N SER A 372 SHEET 1 F 3 GLN B 41 VAL B 44 0 SHEET 2 F 3 TYR B 15 ASP B 18 -1 N ILE B 17 O MET B 42 SHEET 3 F 3 THR B 340 GLU B 341 1 O THR B 340 N TYR B 16 SHEET 1 G 2 PHE B 185 TRP B 186 0 SHEET 2 G 2 MET B 195 VAL B 196 -1 O MET B 195 N TRP B 186 SHEET 1 H 3 GLN B 361 THR B 362 0 SHEET 2 H 3 ILE B 371 ASN B 375 -1 O ILE B 374 N GLN B 361 SHEET 3 H 3 VAL B 378 TYR B 381 -1 O SER B 380 N SER B 372 LINK C ALA A 110 N ACSD A 111 1555 1555 1.34 LINK C ALA A 110 N BCSD A 111 1555 1555 1.33 LINK C ACSD A 111 N TYR A 112 1555 1555 1.33 LINK C BCSD A 111 N TYR A 112 1555 1555 1.33 LINK C ALA B 110 N BCSD B 111 1555 1555 1.37 LINK C BCSD B 111 N TYR B 112 1555 1555 1.30 LINK SG BCSD B 111 C2 BAAE B 611 1555 1555 1.81 CISPEP 1 GLY A 309 ALA A 310 0 -0.18 CISPEP 2 GLY B 309 ALA B 310 0 -0.17 SITE 1 AC1 3 LYS A 7 THR A 64 ARG A 167 SITE 1 AC2 9 ASP A 83 THR A 377 VAL A 378 ARG A 379 SITE 2 AC2 9 HOH A 650 HOH A 654 HOH A 720 TYR B 183 SITE 3 AC2 9 PRO B 188 SITE 1 AC3 6 LYS B 7 THR B 64 ARG B 167 HOH B 707 SITE 2 AC3 6 HOH B 772 HOH B 818 SITE 1 AC4 20 ALA A 254 ASP B 29 GLY B 31 LYS B 32 SITE 2 AC4 20 GLY B 36 TYR B 143 GLY B 148 GLY B 149 SITE 3 AC4 20 THR B 152 VAL B 196 SER B 201 ASN B 202 SITE 4 AC4 20 PRO B 235 TYR B 236 MET B 239 LYS B 242 SITE 5 AC4 20 AAE B 611 HOH B 778 HOH B 829 HOH B 858 SITE 1 AC5 10 CYS B 111 TYR B 143 PHE B 185 HIS B 233 SITE 2 AC5 10 ASN B 275 TYR B 277 SER B 308 COA B 601 SITE 3 AC5 10 HOH B 814 HOH B 858 SITE 1 AC6 8 TYR A 183 PRO A 188 ILE B 82 ASP B 83 SITE 2 AC6 8 THR B 377 ARG B 379 HOH B 651 HOH B 855 CRYST1 105.300 109.013 140.799 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000