HEADER TRANSFERASE 09-FEB-05 1YSR TITLE CRYSTAL STRUCTURE OF ATP BINDING DOMAIN OF PRRB FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR-TYPE HISTIDINE KINASE PRRB; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: HISTIDINE KINASE; COMPND 6 EC: 2.7.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS HISTIDINE KINASE, ATP-BINDING DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT, XMTB, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.NOWAK,S.PANJIKAR,P.TUCKER,MYCOBACTERIUM TUBERCULOSIS STRUCTURAL AUTHOR 2 PROTEOMICS PROJECT (XMTB) REVDAT 4 25-OCT-23 1YSR 1 REMARK REVDAT 3 13-JUL-11 1YSR 1 VERSN REVDAT 2 24-FEB-09 1YSR 1 VERSN REVDAT 1 12-JUL-05 1YSR 0 JRNL AUTH E.NOWAK,S.PANJIKAR,P.TUCKER JRNL TITL CRYSTAL STRUCTURE OF ATP BINDING DOMAIN OF PRRB FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3035 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4137 ; 1.821 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 5.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;40.082 ;24.202 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;14.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2290 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1381 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2046 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 1.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3260 ; 2.291 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1008 ; 5.079 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 7.924 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.887 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL FOCUSSING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 88.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.86200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG750MME, MAGNESIUM CHLORIDE, BIS REMARK 280 TRIS PROPANE, GLYCEROL, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.95267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.47633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.21450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.73817 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 173.69083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 ARG A 399 REMARK 465 GLY A 400 REMARK 465 SER A 401 REMARK 465 THR A 402 REMARK 465 ALA A 403 REMARK 465 SER A 404 REMARK 465 HIS A 405 REMARK 465 SER A 406 REMARK 465 GLY A 407 REMARK 465 SER A 408 REMARK 465 GLY A 409 REMARK 465 THR B 297 REMARK 465 ARG B 399 REMARK 465 GLY B 400 REMARK 465 SER B 401 REMARK 465 THR B 402 REMARK 465 ALA B 403 REMARK 465 SER B 404 REMARK 465 HIS B 405 REMARK 465 SER B 406 REMARK 465 GLY B 407 REMARK 465 SER B 408 REMARK 465 GLY B 409 REMARK 465 SER B 446 REMARK 465 THR C 297 REMARK 465 SER C 298 REMARK 465 SER C 398 REMARK 465 ARG C 399 REMARK 465 GLY C 400 REMARK 465 SER C 401 REMARK 465 THR C 402 REMARK 465 ALA C 403 REMARK 465 SER C 404 REMARK 465 HIS C 405 REMARK 465 SER C 406 REMARK 465 GLY C 407 REMARK 465 SER C 408 REMARK 465 GLY C 409 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 391 CA C O CB CG CD OE1 REMARK 480 GLN B 391 NE2 REMARK 480 VAL B 392 N CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 392 CA - C - O ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 323 -15.12 73.34 REMARK 500 PRO C 330 125.50 -37.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 323 LEU B 324 -144.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL B 392 20.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YS3 RELATED DB: PDB REMARK 900 ATP BINDING DOMAIN OF PRRB REMARK 900 RELATED ID: 1YS6 RELATED DB: PDB REMARK 900 RESPONSE REGULATORY PROTEIN PRRA REMARK 900 RELATED ID: 1YS7 RELATED DB: PDB REMARK 900 RESPONSE REGULATOR PROTEIN PRRA COMLEXED WITH MG2 REMARK 900 RELATED ID: RV0902C RELATED DB: TARGETDB DBREF 1YSR A 297 446 UNP P0A5Z8 PRRB_MYCTU 297 446 DBREF 1YSR B 297 446 UNP P0A5Z8 PRRB_MYCTU 297 446 DBREF 1YSR C 297 446 UNP P0A5Z8 PRRB_MYCTU 297 446 SEQRES 1 A 150 THR SER ASP ASP HIS VAL PRO VAL ASP ILE THR ASP LEU SEQRES 2 A 150 LEU ASP ARG ALA ALA HIS ASP ALA ALA ARG ILE TYR PRO SEQRES 3 A 150 ASP LEU ASP VAL SER LEU VAL PRO SER PRO THR CYS ILE SEQRES 4 A 150 ILE VAL GLY LEU PRO ALA GLY LEU ARG LEU ALA VAL ASP SEQRES 5 A 150 ASN ALA ILE ALA ASN ALA VAL LYS HIS GLY GLY ALA THR SEQRES 6 A 150 LEU VAL GLN LEU SER ALA VAL SER SER ARG ALA GLY VAL SEQRES 7 A 150 GLU ILE ALA ILE ASP ASP ASN GLY SER GLY VAL PRO GLU SEQRES 8 A 150 GLY GLU ARG GLN VAL VAL PHE GLU ARG PHE SER ARG GLY SEQRES 9 A 150 SER THR ALA SER HIS SER GLY SER GLY LEU GLY LEU ALA SEQRES 10 A 150 LEU VAL ALA GLN GLN ALA GLN LEU HIS GLY GLY THR ALA SEQRES 11 A 150 SER LEU GLU ASN SER PRO LEU GLY GLY ALA ARG LEU VAL SEQRES 12 A 150 LEU ARG LEU PRO GLY PRO SER SEQRES 1 B 150 THR SER ASP ASP HIS VAL PRO VAL ASP ILE THR ASP LEU SEQRES 2 B 150 LEU ASP ARG ALA ALA HIS ASP ALA ALA ARG ILE TYR PRO SEQRES 3 B 150 ASP LEU ASP VAL SER LEU VAL PRO SER PRO THR CYS ILE SEQRES 4 B 150 ILE VAL GLY LEU PRO ALA GLY LEU ARG LEU ALA VAL ASP SEQRES 5 B 150 ASN ALA ILE ALA ASN ALA VAL LYS HIS GLY GLY ALA THR SEQRES 6 B 150 LEU VAL GLN LEU SER ALA VAL SER SER ARG ALA GLY VAL SEQRES 7 B 150 GLU ILE ALA ILE ASP ASP ASN GLY SER GLY VAL PRO GLU SEQRES 8 B 150 GLY GLU ARG GLN VAL VAL PHE GLU ARG PHE SER ARG GLY SEQRES 9 B 150 SER THR ALA SER HIS SER GLY SER GLY LEU GLY LEU ALA SEQRES 10 B 150 LEU VAL ALA GLN GLN ALA GLN LEU HIS GLY GLY THR ALA SEQRES 11 B 150 SER LEU GLU ASN SER PRO LEU GLY GLY ALA ARG LEU VAL SEQRES 12 B 150 LEU ARG LEU PRO GLY PRO SER SEQRES 1 C 150 THR SER ASP ASP HIS VAL PRO VAL ASP ILE THR ASP LEU SEQRES 2 C 150 LEU ASP ARG ALA ALA HIS ASP ALA ALA ARG ILE TYR PRO SEQRES 3 C 150 ASP LEU ASP VAL SER LEU VAL PRO SER PRO THR CYS ILE SEQRES 4 C 150 ILE VAL GLY LEU PRO ALA GLY LEU ARG LEU ALA VAL ASP SEQRES 5 C 150 ASN ALA ILE ALA ASN ALA VAL LYS HIS GLY GLY ALA THR SEQRES 6 C 150 LEU VAL GLN LEU SER ALA VAL SER SER ARG ALA GLY VAL SEQRES 7 C 150 GLU ILE ALA ILE ASP ASP ASN GLY SER GLY VAL PRO GLU SEQRES 8 C 150 GLY GLU ARG GLN VAL VAL PHE GLU ARG PHE SER ARG GLY SEQRES 9 C 150 SER THR ALA SER HIS SER GLY SER GLY LEU GLY LEU ALA SEQRES 10 C 150 LEU VAL ALA GLN GLN ALA GLN LEU HIS GLY GLY THR ALA SEQRES 11 C 150 SER LEU GLU ASN SER PRO LEU GLY GLY ALA ARG LEU VAL SEQRES 12 C 150 LEU ARG LEU PRO GLY PRO SER HET TRS A1001 8 HET GOL A2003 6 HET TRS B1002 8 HET GOL B2002 6 HET TRS C1003 8 HET GOL C2001 6 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 TRS 3(C4 H12 N O3 1+) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *167(H2 O) HELIX 1 1 ILE A 306 TYR A 321 1 16 HELIX 2 2 LEU A 339 HIS A 357 1 19 HELIX 3 3 PRO A 386 GLY A 388 5 3 HELIX 4 4 GLU A 389 GLU A 395 1 7 HELIX 5 5 LEU A 412 HIS A 422 1 11 HELIX 6 6 ILE B 306 TYR B 321 1 16 HELIX 7 7 LEU B 339 HIS B 357 1 19 HELIX 8 8 PRO B 386 GLY B 388 5 3 HELIX 9 9 GLU B 389 ARG B 396 1 8 HELIX 10 10 LEU B 412 HIS B 422 1 11 HELIX 11 11 ILE C 306 TYR C 321 1 16 HELIX 12 12 LEU C 339 HIS C 357 1 19 HELIX 13 13 PRO C 386 ARG C 390 5 5 HELIX 14 14 GLN C 391 ARG C 396 5 6 HELIX 15 15 LEU C 412 HIS C 422 1 11 SHEET 1 A 2 VAL A 302 ASP A 305 0 SHEET 2 A 2 ILE A 335 GLY A 338 -1 O ILE A 336 N VAL A 304 SHEET 1 B 5 ASP A 325 LEU A 328 0 SHEET 2 B 5 LEU A 362 SER A 370 1 O LEU A 365 N SER A 327 SHEET 3 B 5 GLY A 373 ASP A 380 -1 O ASP A 379 N GLN A 364 SHEET 4 B 5 ALA A 436 PRO A 443 -1 O LEU A 440 N ILE A 376 SHEET 5 B 5 THR A 425 ASN A 430 -1 N SER A 427 O VAL A 439 SHEET 1 C 2 VAL B 302 ASP B 305 0 SHEET 2 C 2 ILE B 335 GLY B 338 -1 O ILE B 336 N VAL B 304 SHEET 1 D 5 ASP B 325 LEU B 328 0 SHEET 2 D 5 LEU B 362 SER B 370 1 O LEU B 365 N SER B 327 SHEET 3 D 5 GLY B 373 ASP B 380 -1 O ASP B 379 N GLN B 364 SHEET 4 D 5 ALA B 436 PRO B 443 -1 O LEU B 440 N ILE B 376 SHEET 5 D 5 THR B 425 ASN B 430 -1 N SER B 427 O VAL B 439 SHEET 1 E 2 VAL C 302 ASP C 305 0 SHEET 2 E 2 ILE C 335 GLY C 338 -1 O ILE C 336 N VAL C 304 SHEET 1 F 5 ASP C 325 LEU C 328 0 SHEET 2 F 5 LEU C 362 SER C 370 1 O LEU C 365 N SER C 327 SHEET 3 F 5 GLY C 373 ASP C 380 -1 O ASP C 379 N GLN C 364 SHEET 4 F 5 ALA C 436 PRO C 443 -1 O LEU C 440 N ILE C 376 SHEET 5 F 5 THR C 425 ASN C 430 -1 N SER C 427 O VAL C 439 SITE 1 AC1 11 HOH A 99 HOH A 135 SER A 370 ARG A 371 SITE 2 AC1 11 GLY A 373 GLY A 444 PRO A 445 SER A 446 SITE 3 AC1 11 ILE B 320 TYR B 321 LYS B 356 SITE 1 AC2 11 HOH B 17 HOH B 39 HOH B 83 HOH B 111 SITE 2 AC2 11 SER B 370 ARG B 371 GLY B 373 GLY B 444 SITE 3 AC2 11 PRO B 445 TYR C 321 LYS C 356 SITE 1 AC3 12 HOH A 165 ILE A 320 TYR A 321 HOH C 24 SITE 2 AC3 12 HOH C 57 HOH C 149 SER C 370 ARG C 371 SITE 3 AC3 12 GLY C 373 GLY C 444 PRO C 445 SER C 446 SITE 1 AC4 6 ALA C 372 GLY C 373 VAL C 374 ARG C 441 SITE 2 AC4 6 LEU C 442 PRO C 443 SITE 1 AC5 6 HOH B 33 HOH B 65 HOH B 100 VAL B 374 SITE 2 AC5 6 ARG B 441 LEU B 442 SITE 1 AC6 5 ALA A 372 VAL A 374 ARG A 441 LEU A 442 SITE 2 AC6 5 PRO A 443 CRYST1 61.047 61.047 208.429 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016381 0.009457 0.000000 0.00000 SCALE2 0.000000 0.018915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004798 0.00000