HEADER PHOTOSYNTHETIC REACTION CENTER 07-DEC-94 1YST TITLE STRUCTURE OF THE PHOTOCHEMICAL REACTION CENTER OF A SPHEROIDENE TITLE 2 CONTAINING PURPLE BACTERIUM, RHODOBACTER SPHAEROIDES Y, AT 3 TITLE 3 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYNTHETIC REACTION CENTER (L SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHOTOSYNTHETIC REACTION CENTER (M SUBUNIT); COMPND 7 CHAIN: M; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PHOTOSYNTHETIC REACTION CENTER (H SUBUNIT); COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 6 ORGANISM_TAXID: 1063; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 9 ORGANISM_TAXID: 1063 KEYWDS PHOTOSYNTHETIC REACTION CENTER EXPDTA X-RAY DIFFRACTION AUTHOR B.ARNOUX,J.F.GAUCHER,A.DUCRUIX,F.REISS-HUSSON REVDAT 4 14-FEB-24 1YST 1 REMARK LINK REVDAT 3 13-JUL-11 1YST 1 VERSN REVDAT 2 24-FEB-09 1YST 1 VERSN REVDAT 1 27-FEB-95 1YST 0 JRNL AUTH B.ARNOUX,J.F.GAUCHER,A.DUCRUIX,F.REISS-HUSSON JRNL TITL STRUCTURE OF THE PHOTOCHEMICAL REACTION CENTRE OF A JRNL TITL 2 SPHEROIDENE-CONTAINING PURPLE-BACTERIUM, RHODOBACTER JRNL TITL 3 SPHAEROIDES Y, AT 3 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 51 368 1995 JRNL REFN ISSN 0907-4449 JRNL PMID 15299304 JRNL DOI 10.1107/S0907444994013120 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DUCRUIX,F.REISS-HUSSON REMARK 1 TITL PRIMARY CHARACTERIZATION BY X-RAY DIFFRACTION OF CRYSTALS OF REMARK 1 TITL 2 PHOTOCHEMICAL REACTION CENTERS FROM WILD-TYPE REMARK 1 TITL 3 RHODOPSEUDOMONAS SPHEROIDES REMARK 1 REF J.MOL.BIOL. V. 193 419 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 553 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24200 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -238.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, M, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY L 252 C THR L 253 N -0.329 REMARK 500 ARG M 228 CD ARG M 228 NE -0.204 REMARK 500 ARG M 228 NE ARG M 228 CZ -0.122 REMARK 500 ALA H 99 C PRO H 100 N 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA L 53 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU L 133 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 LEU L 187 C - N - CA ANGL. DEV. = -17.0 DEGREES REMARK 500 LEU L 193 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLY L 252 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 GLN M 46 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 LEU M 103 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG M 228 CG - CD - NE ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG M 228 CD - NE - CZ ANGL. DEV. = 39.7 DEGREES REMARK 500 ARG M 228 NE - CZ - NH1 ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG M 228 NE - CZ - NH2 ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU M 278 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU H 120 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU H 123 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ALA H 138 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 3 75.07 -1.54 REMARK 500 SER L 4 -89.34 16.49 REMARK 500 ARG L 7 -66.33 -18.87 REMARK 500 ARG L 10 73.35 -67.78 REMARK 500 THR L 15 105.67 55.25 REMARK 500 VAL L 17 -11.07 -145.60 REMARK 500 PHE L 22 56.38 81.33 REMARK 500 ASP L 23 75.68 -156.75 REMARK 500 TRP L 25 94.46 -52.02 REMARK 500 VAL L 26 86.97 -65.43 REMARK 500 THR L 38 -62.31 -90.54 REMARK 500 ALA L 42 -70.79 -87.23 REMARK 500 SER L 52 -3.84 -50.08 REMARK 500 LEU L 55 5.13 -176.90 REMARK 500 THR L 58 134.41 -21.69 REMARK 500 GLN L 62 3.35 -68.68 REMARK 500 ILE L 64 -157.12 -116.46 REMARK 500 SER L 65 -155.45 164.89 REMARK 500 ALA L 70 178.05 -47.73 REMARK 500 LEU L 71 -93.81 -63.89 REMARK 500 GLU L 72 42.60 -68.82 REMARK 500 LEU L 75 -67.29 -170.58 REMARK 500 ALA L 78 -134.61 -73.66 REMARK 500 ALA L 81 -37.43 -148.89 REMARK 500 LYS L 82 43.58 -90.32 REMARK 500 PHE L 97 -70.39 -59.77 REMARK 500 VAL L 98 -33.92 -38.47 REMARK 500 TYR L 115 91.01 -57.82 REMARK 500 HIS L 116 -34.93 -137.91 REMARK 500 LEU L 131 53.13 -99.72 REMARK 500 VAL L 132 -49.36 -163.69 REMARK 500 MET L 138 -78.01 -51.76 REMARK 500 ALA L 141 98.51 -59.84 REMARK 500 TRP L 142 56.15 -69.75 REMARK 500 TYR L 144 -9.03 -55.01 REMARK 500 ALA L 145 -135.64 -75.26 REMARK 500 ILE L 150 -84.60 -58.02 REMARK 500 PRO L 171 -103.33 -58.46 REMARK 500 ALA L 172 -65.34 -8.16 REMARK 500 HIS L 173 -57.57 -29.44 REMARK 500 THR L 182 -16.29 -45.03 REMARK 500 ALA L 186 -71.09 -47.01 REMARK 500 LEU L 193 -34.05 -33.08 REMARK 500 ALA L 197 -70.15 -67.83 REMARK 500 ALA L 198 -34.69 -39.70 REMARK 500 LYS L 202 151.55 -15.48 REMARK 500 MET L 206 81.61 -61.53 REMARK 500 ARG L 207 120.59 -39.18 REMARK 500 PRO L 209 -59.47 -29.64 REMARK 500 THR L 214 -71.77 -85.64 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS L 153 -11.47 REMARK 500 GLY L 252 13.94 REMARK 500 TRP L 263 -10.55 REMARK 500 ALA H 99 -12.39 REMARK 500 ALA H 138 -16.16 REMARK 500 VAL H 142 10.89 REMARK 500 ASN H 147 11.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U10 L 277 REMARK 610 U10 M 311 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L 275 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 153 NE2 REMARK 620 2 BCL L 275 NA 86.0 REMARK 620 3 BCL L 275 NB 85.4 84.3 REMARK 620 4 BCL L 275 NC 93.4 174.5 90.3 REMARK 620 5 BCL L 275 ND 95.0 87.1 171.3 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L 274 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 173 NE2 REMARK 620 2 BCL L 274 NA 106.7 REMARK 620 3 BCL L 274 NB 82.9 88.1 REMARK 620 4 BCL L 274 NC 73.1 177.9 89.8 REMARK 620 5 BCL L 274 ND 97.1 91.8 179.8 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN M 306 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 89.2 REMARK 620 3 HIS M 219 NE2 141.4 91.8 REMARK 620 4 GLU M 234 OE1 86.4 78.2 131.5 REMARK 620 5 GLU M 234 OE2 144.0 72.8 71.8 59.9 REMARK 620 6 HIS M 266 NE2 104.1 143.0 98.1 68.5 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL M 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 182 NE2 REMARK 620 2 BCL M 307 NA 83.4 REMARK 620 3 BCL M 307 NB 82.5 87.0 REMARK 620 4 BCL M 307 NC 97.0 179.4 92.7 REMARK 620 5 BCL M 307 ND 99.1 91.7 177.7 88.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL M 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 202 NE2 REMARK 620 2 BCL M 308 NA 86.9 REMARK 620 3 BCL M 308 NB 77.8 85.8 REMARK 620 4 BCL M 308 NC 94.3 172.4 101.8 REMARK 620 5 BCL M 308 ND 100.3 79.5 165.2 92.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN M 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL M 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL M 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH M 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH L 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPO M 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 M 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 L 277 DBREF 1YST L 1 273 UNP P02954 RCEL_RHOSH 1 273 DBREF 1YST M 1 305 UNP P02953 RCEM_RHOSH 1 305 DBREF 1YST H 1 260 UNP P11846 RCEH_RHOSH 1 260 SEQRES 1 L 273 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL PRO GLY SEQRES 2 L 273 GLY THR LEU VAL GLY GLY ASN LEU PHE ASP PHE TRP VAL SEQRES 3 L 273 GLY PRO PHE TYR VAL GLY PHE PHE GLY VAL ALA THR PHE SEQRES 4 L 273 PHE PHE ALA ALA LEU GLY ILE ILE LEU ILE ALA TRP SER SEQRES 5 L 273 ALA VAL LEU GLN GLY THR TRP ASN PRO GLN LEU ILE SER SEQRES 6 L 273 VAL TYR PRO PRO ALA LEU GLU TYR GLY LEU GLY GLY ALA SEQRES 7 L 273 PRO LEU ALA LYS GLY GLY LEU TRP GLN ILE ILE THR ILE SEQRES 8 L 273 CYS ALA THR GLY ALA PHE VAL SER TRP ALA LEU ARG GLU SEQRES 9 L 273 VAL GLU ILE CYS ARG LYS LEU GLY ILE GLY TYR HIS ILE SEQRES 10 L 273 PRO PHE ALA PHE ALA PHE ALA ILE LEU ALA TYR LEU THR SEQRES 11 L 273 LEU VAL LEU PHE ARG PRO VAL MET MET GLY ALA TRP GLY SEQRES 12 L 273 TYR ALA PHE PRO TYR GLY ILE TRP THR HIS LEU ASP TRP SEQRES 13 L 273 VAL SER ASN THR GLY TYR THR TYR GLY ASN PHE HIS TYR SEQRES 14 L 273 ASN PRO ALA HIS MET ILE ALA ILE SER PHE PHE PHE THR SEQRES 15 L 273 ASN ALA LEU ALA LEU ALA LEU HIS GLY ALA LEU VAL LEU SEQRES 16 L 273 SER ALA ALA ASN PRO GLU LYS GLY LYS GLU MET ARG THR SEQRES 17 L 273 PRO ASP HIS GLU ASP THR PHE PHE ARG ASP LEU VAL GLY SEQRES 18 L 273 TYR SER ILE GLY THR LEU GLY ILE HIS ARG LEU GLY LEU SEQRES 19 L 273 LEU LEU SER LEU SER ALA VAL PHE PHE SER ALA LEU CYS SEQRES 20 L 273 MET ILE ILE THR GLY THR ILE TRP PHE ASP GLN TRP VAL SEQRES 21 L 273 ASP TRP TRP GLN TRP TRP VAL LYS LEU PRO TRP TRP ALA SEQRES 1 M 305 ALA GLU TYR GLN ASN ILE PHE SER GLN VAL GLN VAL ARG SEQRES 2 M 305 GLY PRO ALA ASP LEU GLY MET THR GLU ASP VAL ASN LEU SEQRES 3 M 305 ALA ASN ARG SER GLY VAL GLY PRO PHE SER THR LEU LEU SEQRES 4 M 305 GLY TRP PHE GLY ASN ALA GLN LEU GLY PRO ILE TYR LEU SEQRES 5 M 305 GLY SER LEU GLY VAL LEU SER LEU PHE SER GLY LEU MET SEQRES 6 M 305 TRP PHE PHE THR ILE GLY ILE TRP PHE TRP TYR GLN ALA SEQRES 7 M 305 GLY TRP ASN PRO ALA VAL PHE LEU ARG ASP LEU PHE PHE SEQRES 8 M 305 PHE SER LEU GLU PRO PRO ALA PRO GLU TYR GLY LEU SER SEQRES 9 M 305 PHE ALA ALA PRO LEU LYS GLU GLY GLY LEU TRP LEU ILE SEQRES 10 M 305 ALA SER PHE PHE MET PHE VAL ALA VAL TRP SER TRP TRP SEQRES 11 M 305 GLY ARG THR TYR LEU ARG ALA GLN ALA MET GLY MET GLY SEQRES 12 M 305 LYS HIS THR ALA TRP ALA PHE LEU SER ALA ILE TRP LEU SEQRES 13 M 305 TRP MET VAL LEU GLY PHE ILE ARG PRO ILE LEU MET GLY SEQRES 14 M 305 SER TRP SER GLU ALA VAL PRO TYR GLY ILE PHE SER HIS SEQRES 15 M 305 LEU ASP TRP THR ASN ASN PHE SER LEU VAL HIS GLY ASN SEQRES 16 M 305 LEU PHE TYR ASN PRO PHE HIS GLY LEU SER ILE ALA PHE SEQRES 17 M 305 LEU TYR GLY SER ALA LEU LEU PHE ALA MET HIS GLY ALA SEQRES 18 M 305 THR ILE LEU ALA VAL SER ARG PHE GLY GLY GLU ARG GLU SEQRES 19 M 305 LEU GLU GLN ILE ALA ASP ARG GLY THR ALA ALA GLU ARG SEQRES 20 M 305 ALA ALA LEU PHE TRP ARG TRP THR MET GLY PHE ASN ALA SEQRES 21 M 305 THR MET GLU GLY ILE HIS ARG TRP ALA ILE TRP MET ALA SEQRES 22 M 305 VAL LEU VAL THR LEU THR GLY GLY ILE GLY ILE LEU LEU SEQRES 23 M 305 SER GLY THR VAL VAL ASP ASN TRP TYR VAL TRP GLY GLN SEQRES 24 M 305 ASN HIS GLY MET ALA PRO SEQRES 1 H 260 MET VAL GLY VAL THR ALA PHE GLY ASN PHE ASP LEU ALA SEQRES 2 H 260 SER LEU ALA ILE TYR SER PHE TRP ILE PHE LEU ALA GLY SEQRES 3 H 260 LEU ILE TYR TYR LEU GLN THR GLU ASN MET ARG GLU GLY SEQRES 4 H 260 TYR PRO LEU GLU ASN GLU ASP GLY THR PRO ALA ALA ASN SEQRES 5 H 260 GLN GLY PRO PHE PRO LEU PRO LYS PRO LYS THR PHE ILE SEQRES 6 H 260 LEU PRO HIS GLY ARG GLY THR LEU THR VAL PRO GLY PRO SEQRES 7 H 260 GLU SER GLU ASP ARG PRO ILE ALA LEU ALA ARG THR ALA SEQRES 8 H 260 VAL SER GLU GLY PHE PRO HIS ALA PRO THR GLY ASP PRO SEQRES 9 H 260 MET LYS ASP GLY VAL GLY PRO ALA SER TRP VAL ALA ARG SEQRES 10 H 260 ARG ASP LEU PRO GLU LEU ASP GLY HIS GLY HIS ASN LYS SEQRES 11 H 260 ILE LYS PRO MET LYS ALA ALA ALA GLY PHE HIS VAL SER SEQRES 12 H 260 ALA GLY LYS ASN PRO ILE GLY LEU PRO VAL ARG GLY CYS SEQRES 13 H 260 ASP LEU GLU ILE ALA GLY LYS VAL VAL ASP ILE TRP VAL SEQRES 14 H 260 ASP ILE PRO GLU GLN MET ALA ARG PHE LEU GLU VAL GLU SEQRES 15 H 260 LEU LYS ASP GLY SER THR ARG LEU LEU PRO MET GLN MET SEQRES 16 H 260 VAL LYS VAL GLN SER ASN ARG VAL HIS VAL ASN ALA LEU SEQRES 17 H 260 SER SER ASP LEU PHE ALA GLY ILE PRO THR ILE LYS SER SEQRES 18 H 260 PRO THR GLU VAL THR LEU LEU GLU GLU ASP LYS ILE CYS SEQRES 19 H 260 GLY TYR VAL ALA GLY GLY LEU MET TYR ALA ALA PRO LYS SEQRES 20 H 260 ARG LYS SER VAL VAL ALA ALA MET LEU ALA GLU TYR ALA HET BCL L 274 66 HET BCL L 275 66 HET BPH L 276 65 HET U10 L 277 58 HET MN M 306 1 HET BCL M 307 66 HET BCL M 308 66 HET BPH M 309 65 HET SPO M 310 42 HET U10 M 311 58 HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM BPH BACTERIOPHEOPHYTIN A HETNAM U10 UBIQUINONE-10 HETNAM MN MANGANESE (II) ION HETNAM SPO SPHEROIDENE HETSYN U10 COENZYME Q10 FORMUL 4 BCL 4(C55 H74 MG N4 O6) FORMUL 6 BPH 2(C55 H76 N4 O6) FORMUL 7 U10 2(C59 H90 O4) FORMUL 8 MN MN 2+ FORMUL 12 SPO C41 H60 O HELIX 1 1 PHE L 33 ALA L 53 1 21 HELIX 2 2 GLY L 84 LEU L 111 1 28 HELIX 3 3 ILE L 117 LEU L 133 1 17 HELIX 4 4 ILE L 150 TYR L 164 1 15 HELIX 5 5 HIS L 173 LEU L 193 1 21 HELIX 6 6 PRO L 209 PHE L 215 1 7 HELIX 7 7 GLY L 225 ILE L 249 1 25 HELIX 8 8 THR M 37 PHE M 42 1 6 HELIX 9 9 SER M 54 GLN M 77 1 24 HELIX 10 10 LEU M 114 GLN M 138 1 25 HELIX 11 11 HIS M 145 GLY M 161 1 17 HELIX 12 12 PHE M 180 ASN M 188 1 9 HELIX 13 13 PRO M 200 VAL M 226 1 27 HELIX 14 14 THR M 243 THR M 255 1 13 HELIX 15 15 GLU M 263 LEU M 286 1 24 HELIX 16 16 LEU H 12 MET H 36 1 25 SHEET 1 A 3 VAL H 153 GLY H 155 0 SHEET 2 A 3 ARG H 202 VAL H 205 1 N VAL H 203 O ARG H 154 SHEET 3 A 3 LYS H 197 GLN H 199 -1 N GLN H 199 O ARG H 202 SHEET 1 B 2 PHE H 178 LEU H 183 0 SHEET 2 B 2 SER H 187 PRO H 192 -1 N LEU H 191 O LEU H 179 LINK NE2 HIS L 153 MG BCL L 275 1555 1555 2.29 LINK NE2 HIS L 173 MG BCL L 274 1555 1555 2.22 LINK NE2 HIS L 190 MN MN M 306 1555 1555 2.07 LINK NE2 HIS L 230 MN MN M 306 1555 1555 2.20 LINK NE2 HIS M 182 MG BCL M 307 1555 1555 2.33 LINK NE2 HIS M 202 MG BCL M 308 1555 1555 2.36 LINK NE2 HIS M 219 MN MN M 306 1555 1555 1.98 LINK OE1 GLU M 234 MN MN M 306 1555 1555 2.27 LINK OE2 GLU M 234 MN MN M 306 1555 1555 2.15 LINK NE2 HIS M 266 MN MN M 306 1555 1555 2.07 SITE 1 AC1 5 HIS L 190 HIS L 230 HIS M 219 GLU M 234 SITE 2 AC1 5 HIS M 266 SITE 1 AC2 15 HIS L 168 MET L 174 ILE L 177 SER L 178 SITE 2 AC2 15 PHE L 181 THR L 182 BCL L 274 U10 L 277 SITE 3 AC2 15 VAL M 175 HIS M 182 LEU M 183 THR M 186 SITE 4 AC2 15 BCL M 308 BPH M 309 SPO M 310 SITE 1 AC3 17 PHE L 97 ALA L 124 ALA L 127 LEU L 131 SITE 2 AC3 17 PHE L 167 HIS L 168 HIS L 173 ILE L 177 SITE 3 AC3 17 PHE L 180 SER L 244 CYS L 247 MET L 248 SITE 4 AC3 17 BCL L 275 BPH L 276 PHE M 197 BCL M 307 SITE 5 AC3 17 BCL M 308 SITE 1 AC4 20 HIS L 168 PHE L 181 BCL L 274 U10 L 277 SITE 2 AC4 20 VAL M 126 LEU M 156 TRP M 157 LEU M 160 SITE 3 AC4 20 THR M 186 SER M 190 LEU M 196 PHE M 197 SITE 4 AC4 20 HIS M 202 SER M 205 ILE M 206 TYR M 210 SITE 5 AC4 20 GLY M 280 ILE M 284 BCL M 307 BPH M 309 SITE 1 AC5 14 TYR L 128 LEU L 131 PHE L 146 HIS L 153 SITE 2 AC5 14 LEU L 154 BCL L 274 BPH L 276 PHE M 197 SITE 3 AC5 14 GLY M 203 ILE M 206 ALA M 207 TYR M 210 SITE 4 AC5 14 LEU M 214 U10 M 311 SITE 1 AC6 14 PHE L 181 ALA L 184 LEU L 185 ALA L 188 SITE 2 AC6 14 LEU L 189 PHE M 67 VAL M 126 TRP M 129 SITE 3 AC6 14 PHE M 150 ALA M 153 THR M 277 BCL M 307 SITE 4 AC6 14 BCL M 308 SPO M 310 SITE 1 AC7 14 ALA L 42 ILE L 89 ALA L 93 TRP L 100 SITE 2 AC7 14 GLU L 104 ALA L 120 PHE L 121 TYR L 148 SITE 3 AC7 14 VAL L 241 BCL L 274 BCL L 275 TYR M 210 SITE 4 AC7 14 LEU M 214 MET M 218 SITE 1 AC8 15 PHE M 67 PHE M 68 ILE M 70 PHE M 74 SITE 2 AC8 15 PHE M 85 SER M 119 PHE M 123 TRP M 157 SITE 3 AC8 15 GLY M 161 PHE M 162 VAL M 175 TYR M 177 SITE 4 AC8 15 GLY M 178 BCL M 307 BPH M 309 SITE 1 AC9 11 BCL L 275 THR M 222 ALA M 248 ALA M 249 SITE 2 AC9 11 TRP M 252 MET M 256 ASN M 259 ALA M 260 SITE 3 AC9 11 THR M 261 ILE M 265 TRP M 268 SITE 1 BC1 10 HIS L 190 LEU L 193 GLU L 212 PHE L 216 SITE 2 BC1 10 SER L 223 ILE L 224 GLY L 225 ILE L 229 SITE 3 BC1 10 BCL M 307 BCL M 308 CRYST1 143.700 139.800 78.650 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012715 0.00000