data_1YTD # _entry.id 1YTD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YTD pdb_00001ytd 10.2210/pdb1ytd/pdb RCSB RCSB031907 ? ? WWPDB D_1000031907 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YTD _pdbx_database_status.recvd_initial_deposition_date 2005-02-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YTE 'phosphoribosylpyrophosphate bound structure' unspecified TargetDB BSGCAIR30619 . unspecified PDB 1YTK 'with nicotinate mononucleotide' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shin, D.H.' 1 'Berkeley Structural Genomics Center (BSGC)' 2 # _citation.id primary _citation.title 'Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 18326 _citation.page_last 18335 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15753098 _citation.pdbx_database_id_DOI 10.1074/jbc.M501622200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shin, D.H.' 1 ? primary 'Oganesyan, N.' 2 ? primary 'Jancarik, J.' 3 ? primary 'Yokota, H.' 4 ? primary 'Kim, R.' 5 ? primary 'Kim, S.H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'nicotinate phosphoribosyltransferase from Thermoplasma acidophilum' 43695.105 1 2.4.2.11 ? ? ? 2 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGGGGGMNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLDVDLYAI PEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRS AYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYI RLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKP ETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFKDIS ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGGGGMNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLDVDLYAI PEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRS AYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYI RLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKP ETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFKDIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier BSGCAIR30619 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLY n 1 4 GLY n 1 5 GLY n 1 6 GLY n 1 7 MET n 1 8 ASN n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 THR n 1 13 ALA n 1 14 SER n 1 15 ASP n 1 16 GLU n 1 17 ASP n 1 18 ILE n 1 19 LYS n 1 20 LYS n 1 21 GLY n 1 22 LEU n 1 23 ALA n 1 24 SER n 1 25 ASP n 1 26 VAL n 1 27 TYR n 1 28 PHE n 1 29 GLU n 1 30 ARG n 1 31 THR n 1 32 ILE n 1 33 SER n 1 34 ALA n 1 35 ILE n 1 36 GLY n 1 37 ASP n 1 38 LYS n 1 39 CYS n 1 40 ASN n 1 41 ASP n 1 42 LEU n 1 43 ARG n 1 44 VAL n 1 45 ALA n 1 46 MET n 1 47 GLU n 1 48 ALA n 1 49 THR n 1 50 VAL n 1 51 SER n 1 52 GLY n 1 53 PRO n 1 54 LEU n 1 55 ASP n 1 56 THR n 1 57 TRP n 1 58 ILE n 1 59 ASN n 1 60 PHE n 1 61 THR n 1 62 GLY n 1 63 LEU n 1 64 ASP n 1 65 GLU n 1 66 VAL n 1 67 LEU n 1 68 LYS n 1 69 LEU n 1 70 LEU n 1 71 GLU n 1 72 GLY n 1 73 LEU n 1 74 ASP n 1 75 VAL n 1 76 ASP n 1 77 LEU n 1 78 TYR n 1 79 ALA n 1 80 ILE n 1 81 PRO n 1 82 GLU n 1 83 GLY n 1 84 THR n 1 85 ILE n 1 86 LEU n 1 87 PHE n 1 88 PRO n 1 89 ARG n 1 90 ASP n 1 91 ALA n 1 92 ASN n 1 93 GLY n 1 94 LEU n 1 95 PRO n 1 96 VAL n 1 97 PRO n 1 98 PHE n 1 99 ILE n 1 100 ARG n 1 101 VAL n 1 102 GLU n 1 103 GLY n 1 104 ARG n 1 105 TYR n 1 106 CYS n 1 107 ASP n 1 108 PHE n 1 109 GLY n 1 110 MET n 1 111 TYR n 1 112 GLU n 1 113 THR n 1 114 ALA n 1 115 ILE n 1 116 LEU n 1 117 GLY n 1 118 PHE n 1 119 ILE n 1 120 CYS n 1 121 GLN n 1 122 ALA n 1 123 SER n 1 124 GLY n 1 125 ILE n 1 126 SER n 1 127 THR n 1 128 LYS n 1 129 ALA n 1 130 SER n 1 131 LYS n 1 132 VAL n 1 133 ARG n 1 134 LEU n 1 135 ALA n 1 136 ALA n 1 137 GLY n 1 138 ASP n 1 139 SER n 1 140 PRO n 1 141 PHE n 1 142 PHE n 1 143 SER n 1 144 PHE n 1 145 GLY n 1 146 ILE n 1 147 ARG n 1 148 ARG n 1 149 MET n 1 150 HIS n 1 151 PRO n 1 152 ALA n 1 153 ILE n 1 154 SER n 1 155 PRO n 1 156 MET n 1 157 ILE n 1 158 ASP n 1 159 ARG n 1 160 SER n 1 161 ALA n 1 162 TYR n 1 163 ILE n 1 164 GLY n 1 165 GLY n 1 166 ALA n 1 167 ASP n 1 168 GLY n 1 169 VAL n 1 170 SER n 1 171 GLY n 1 172 ILE n 1 173 LEU n 1 174 GLY n 1 175 ALA n 1 176 LYS n 1 177 LEU n 1 178 ILE n 1 179 ASP n 1 180 GLN n 1 181 ASP n 1 182 PRO n 1 183 VAL n 1 184 GLY n 1 185 THR n 1 186 MET n 1 187 PRO n 1 188 HIS n 1 189 ALA n 1 190 LEU n 1 191 SER n 1 192 ILE n 1 193 MET n 1 194 LEU n 1 195 GLY n 1 196 ASP n 1 197 GLU n 1 198 GLU n 1 199 ALA n 1 200 TRP n 1 201 LYS n 1 202 LEU n 1 203 THR n 1 204 LEU n 1 205 GLU n 1 206 ASN n 1 207 THR n 1 208 LYS n 1 209 ASN n 1 210 GLY n 1 211 GLN n 1 212 LYS n 1 213 SER n 1 214 VAL n 1 215 LEU n 1 216 LEU n 1 217 ILE n 1 218 ASP n 1 219 THR n 1 220 TYR n 1 221 MET n 1 222 ASP n 1 223 GLU n 1 224 LYS n 1 225 PHE n 1 226 ALA n 1 227 ALA n 1 228 ILE n 1 229 LYS n 1 230 ILE n 1 231 ALA n 1 232 GLU n 1 233 MET n 1 234 PHE n 1 235 ASP n 1 236 LYS n 1 237 VAL n 1 238 ASP n 1 239 TYR n 1 240 ILE n 1 241 ARG n 1 242 LEU n 1 243 ASP n 1 244 THR n 1 245 PRO n 1 246 SER n 1 247 SER n 1 248 ARG n 1 249 ARG n 1 250 GLY n 1 251 ASN n 1 252 PHE n 1 253 GLU n 1 254 ALA n 1 255 LEU n 1 256 ILE n 1 257 ARG n 1 258 GLU n 1 259 VAL n 1 260 ARG n 1 261 TRP n 1 262 GLU n 1 263 LEU n 1 264 ALA n 1 265 LEU n 1 266 ARG n 1 267 GLY n 1 268 ARG n 1 269 SER n 1 270 ASP n 1 271 ILE n 1 272 LYS n 1 273 ILE n 1 274 MET n 1 275 VAL n 1 276 SER n 1 277 GLY n 1 278 GLY n 1 279 LEU n 1 280 ASP n 1 281 GLU n 1 282 ASN n 1 283 THR n 1 284 VAL n 1 285 LYS n 1 286 LYS n 1 287 LEU n 1 288 ARG n 1 289 GLU n 1 290 ALA n 1 291 GLY n 1 292 ALA n 1 293 GLU n 1 294 ALA n 1 295 PHE n 1 296 GLY n 1 297 VAL n 1 298 GLY n 1 299 THR n 1 300 SER n 1 301 ILE n 1 302 SER n 1 303 SER n 1 304 ALA n 1 305 LYS n 1 306 PRO n 1 307 PHE n 1 308 ASP n 1 309 PHE n 1 310 ALA n 1 311 MET n 1 312 ASP n 1 313 ILE n 1 314 VAL n 1 315 GLU n 1 316 VAL n 1 317 ASN n 1 318 GLY n 1 319 LYS n 1 320 PRO n 1 321 GLU n 1 322 THR n 1 323 LYS n 1 324 ARG n 1 325 GLY n 1 326 LYS n 1 327 MET n 1 328 SER n 1 329 GLY n 1 330 ARG n 1 331 LYS n 1 332 ASN n 1 333 VAL n 1 334 LEU n 1 335 ARG n 1 336 CYS n 1 337 THR n 1 338 SER n 1 339 CYS n 1 340 HIS n 1 341 ARG n 1 342 ILE n 1 343 GLU n 1 344 VAL n 1 345 VAL n 1 346 PRO n 1 347 ALA n 1 348 ASN n 1 349 VAL n 1 350 GLN n 1 351 GLU n 1 352 LYS n 1 353 THR n 1 354 CYS n 1 355 ILE n 1 356 CYS n 1 357 GLY n 1 358 GLY n 1 359 SER n 1 360 MET n 1 361 GLN n 1 362 ASN n 1 363 LEU n 1 364 LEU n 1 365 VAL n 1 366 LYS n 1 367 TYR n 1 368 LEU n 1 369 SER n 1 370 HIS n 1 371 GLY n 1 372 LYS n 1 373 ARG n 1 374 THR n 1 375 SER n 1 376 GLU n 1 377 TYR n 1 378 PRO n 1 379 ARG n 1 380 PRO n 1 381 LYS n 1 382 GLU n 1 383 ILE n 1 384 ARG n 1 385 SER n 1 386 ARG n 1 387 SER n 1 388 MET n 1 389 LYS n 1 390 GLU n 1 391 LEU n 1 392 GLU n 1 393 TYR n 1 394 PHE n 1 395 LYS n 1 396 ASP n 1 397 ILE n 1 398 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermoplasma _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermoplasma acidophilum' _entity_src_gen.gene_src_strain 'DSM 1728' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma acidophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273075 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)/pSJS1244' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 GLY 2 -4 ? ? ? A . n A 1 3 GLY 3 -3 ? ? ? A . n A 1 4 GLY 4 -2 ? ? ? A . n A 1 5 GLY 5 -1 ? ? ? A . n A 1 6 GLY 6 0 ? ? ? A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 ASN 8 2 2 ASN ASN A . n A 1 9 VAL 9 3 3 VAL VAL A . n A 1 10 PHE 10 4 4 PHE PHE A . n A 1 11 ASN 11 5 5 ASN ASN A . n A 1 12 THR 12 6 6 THR THR A . n A 1 13 ALA 13 7 7 ALA ALA A . n A 1 14 SER 14 8 8 SER SER A . n A 1 15 ASP 15 9 9 ASP ASP A . n A 1 16 GLU 16 10 10 GLU GLU A . n A 1 17 ASP 17 11 11 ASP ASP A . n A 1 18 ILE 18 12 12 ILE ILE A . n A 1 19 LYS 19 13 13 LYS LYS A . n A 1 20 LYS 20 14 14 LYS LYS A . n A 1 21 GLY 21 15 15 GLY GLY A . n A 1 22 LEU 22 16 16 LEU LEU A . n A 1 23 ALA 23 17 17 ALA ALA A . n A 1 24 SER 24 18 18 SER SER A . n A 1 25 ASP 25 19 19 ASP ASP A . n A 1 26 VAL 26 20 20 VAL VAL A . n A 1 27 TYR 27 21 21 TYR TYR A . n A 1 28 PHE 28 22 22 PHE PHE A . n A 1 29 GLU 29 23 23 GLU GLU A . n A 1 30 ARG 30 24 24 ARG ARG A . n A 1 31 THR 31 25 25 THR THR A . n A 1 32 ILE 32 26 26 ILE ILE A . n A 1 33 SER 33 27 27 SER SER A . n A 1 34 ALA 34 28 28 ALA ALA A . n A 1 35 ILE 35 29 29 ILE ILE A . n A 1 36 GLY 36 30 30 GLY GLY A . n A 1 37 ASP 37 31 31 ASP ASP A . n A 1 38 LYS 38 32 32 LYS LYS A . n A 1 39 CYS 39 33 33 CYS CYS A . n A 1 40 ASN 40 34 34 ASN ASN A . n A 1 41 ASP 41 35 35 ASP ASP A . n A 1 42 LEU 42 36 36 LEU LEU A . n A 1 43 ARG 43 37 37 ARG ARG A . n A 1 44 VAL 44 38 38 VAL VAL A . n A 1 45 ALA 45 39 39 ALA ALA A . n A 1 46 MET 46 40 40 MET MET A . n A 1 47 GLU 47 41 41 GLU GLU A . n A 1 48 ALA 48 42 42 ALA ALA A . n A 1 49 THR 49 43 43 THR THR A . n A 1 50 VAL 50 44 44 VAL VAL A . n A 1 51 SER 51 45 45 SER SER A . n A 1 52 GLY 52 46 46 GLY GLY A . n A 1 53 PRO 53 47 47 PRO PRO A . n A 1 54 LEU 54 48 48 LEU LEU A . n A 1 55 ASP 55 49 49 ASP ASP A . n A 1 56 THR 56 50 50 THR THR A . n A 1 57 TRP 57 51 51 TRP TRP A . n A 1 58 ILE 58 52 52 ILE ILE A . n A 1 59 ASN 59 53 53 ASN ASN A . n A 1 60 PHE 60 54 54 PHE PHE A . n A 1 61 THR 61 55 55 THR THR A . n A 1 62 GLY 62 56 56 GLY GLY A . n A 1 63 LEU 63 57 57 LEU LEU A . n A 1 64 ASP 64 58 58 ASP ASP A . n A 1 65 GLU 65 59 59 GLU GLU A . n A 1 66 VAL 66 60 60 VAL VAL A . n A 1 67 LEU 67 61 61 LEU LEU A . n A 1 68 LYS 68 62 62 LYS LYS A . n A 1 69 LEU 69 63 63 LEU LEU A . n A 1 70 LEU 70 64 64 LEU LEU A . n A 1 71 GLU 71 65 65 GLU GLU A . n A 1 72 GLY 72 66 66 GLY GLY A . n A 1 73 LEU 73 67 67 LEU LEU A . n A 1 74 ASP 74 68 68 ASP ASP A . n A 1 75 VAL 75 69 69 VAL VAL A . n A 1 76 ASP 76 70 70 ASP ASP A . n A 1 77 LEU 77 71 71 LEU LEU A . n A 1 78 TYR 78 72 72 TYR TYR A . n A 1 79 ALA 79 73 73 ALA ALA A . n A 1 80 ILE 80 74 74 ILE ILE A . n A 1 81 PRO 81 75 75 PRO PRO A . n A 1 82 GLU 82 76 76 GLU GLU A . n A 1 83 GLY 83 77 77 GLY GLY A . n A 1 84 THR 84 78 78 THR THR A . n A 1 85 ILE 85 79 79 ILE ILE A . n A 1 86 LEU 86 80 80 LEU LEU A . n A 1 87 PHE 87 81 81 PHE PHE A . n A 1 88 PRO 88 82 82 PRO PRO A . n A 1 89 ARG 89 83 83 ARG ARG A . n A 1 90 ASP 90 84 84 ASP ASP A . n A 1 91 ALA 91 85 85 ALA ALA A . n A 1 92 ASN 92 86 86 ASN ASN A . n A 1 93 GLY 93 87 87 GLY GLY A . n A 1 94 LEU 94 88 88 LEU LEU A . n A 1 95 PRO 95 89 89 PRO PRO A . n A 1 96 VAL 96 90 90 VAL VAL A . n A 1 97 PRO 97 91 91 PRO PRO A . n A 1 98 PHE 98 92 92 PHE PHE A . n A 1 99 ILE 99 93 93 ILE ILE A . n A 1 100 ARG 100 94 94 ARG ARG A . n A 1 101 VAL 101 95 95 VAL VAL A . n A 1 102 GLU 102 96 96 GLU GLU A . n A 1 103 GLY 103 97 97 GLY GLY A . n A 1 104 ARG 104 98 98 ARG ARG A . n A 1 105 TYR 105 99 99 TYR TYR A . n A 1 106 CYS 106 100 100 CYS CYS A . n A 1 107 ASP 107 101 101 ASP ASP A . n A 1 108 PHE 108 102 102 PHE PHE A . n A 1 109 GLY 109 103 103 GLY GLY A . n A 1 110 MET 110 104 104 MET MET A . n A 1 111 TYR 111 105 105 TYR TYR A . n A 1 112 GLU 112 106 106 GLU GLU A . n A 1 113 THR 113 107 107 THR THR A . n A 1 114 ALA 114 108 108 ALA ALA A . n A 1 115 ILE 115 109 109 ILE ILE A . n A 1 116 LEU 116 110 110 LEU LEU A . n A 1 117 GLY 117 111 111 GLY GLY A . n A 1 118 PHE 118 112 112 PHE PHE A . n A 1 119 ILE 119 113 113 ILE ILE A . n A 1 120 CYS 120 114 114 CYS CYS A . n A 1 121 GLN 121 115 115 GLN GLN A . n A 1 122 ALA 122 116 116 ALA ALA A . n A 1 123 SER 123 117 117 SER SER A . n A 1 124 GLY 124 118 118 GLY GLY A . n A 1 125 ILE 125 119 119 ILE ILE A . n A 1 126 SER 126 120 120 SER SER A . n A 1 127 THR 127 121 121 THR THR A . n A 1 128 LYS 128 122 122 LYS LYS A . n A 1 129 ALA 129 123 123 ALA ALA A . n A 1 130 SER 130 124 124 SER SER A . n A 1 131 LYS 131 125 125 LYS LYS A . n A 1 132 VAL 132 126 126 VAL VAL A . n A 1 133 ARG 133 127 127 ARG ARG A . n A 1 134 LEU 134 128 128 LEU LEU A . n A 1 135 ALA 135 129 129 ALA ALA A . n A 1 136 ALA 136 130 130 ALA ALA A . n A 1 137 GLY 137 131 131 GLY GLY A . n A 1 138 ASP 138 132 132 ASP ASP A . n A 1 139 SER 139 133 133 SER SER A . n A 1 140 PRO 140 134 134 PRO PRO A . n A 1 141 PHE 141 135 135 PHE PHE A . n A 1 142 PHE 142 136 136 PHE PHE A . n A 1 143 SER 143 137 137 SER SER A . n A 1 144 PHE 144 138 138 PHE PHE A . n A 1 145 GLY 145 139 139 GLY GLY A . n A 1 146 ILE 146 140 140 ILE ILE A . n A 1 147 ARG 147 141 141 ARG ARG A . n A 1 148 ARG 148 142 142 ARG ARG A . n A 1 149 MET 149 143 143 MET MET A . n A 1 150 HIS 150 144 144 HIS HIS A . n A 1 151 PRO 151 145 145 PRO PRO A . n A 1 152 ALA 152 146 146 ALA ALA A . n A 1 153 ILE 153 147 147 ILE ILE A . n A 1 154 SER 154 148 148 SER SER A . n A 1 155 PRO 155 149 149 PRO PRO A . n A 1 156 MET 156 150 150 MET MET A . n A 1 157 ILE 157 151 151 ILE ILE A . n A 1 158 ASP 158 152 152 ASP ASP A . n A 1 159 ARG 159 153 153 ARG ARG A . n A 1 160 SER 160 154 154 SER SER A . n A 1 161 ALA 161 155 155 ALA ALA A . n A 1 162 TYR 162 156 156 TYR TYR A . n A 1 163 ILE 163 157 157 ILE ILE A . n A 1 164 GLY 164 158 158 GLY GLY A . n A 1 165 GLY 165 159 159 GLY GLY A . n A 1 166 ALA 166 160 160 ALA ALA A . n A 1 167 ASP 167 161 161 ASP ASP A . n A 1 168 GLY 168 162 162 GLY GLY A . n A 1 169 VAL 169 163 163 VAL VAL A . n A 1 170 SER 170 164 164 SER SER A . n A 1 171 GLY 171 165 165 GLY GLY A . n A 1 172 ILE 172 166 166 ILE ILE A . n A 1 173 LEU 173 167 167 LEU LEU A . n A 1 174 GLY 174 168 168 GLY GLY A . n A 1 175 ALA 175 169 169 ALA ALA A . n A 1 176 LYS 176 170 170 LYS LYS A . n A 1 177 LEU 177 171 171 LEU LEU A . n A 1 178 ILE 178 172 172 ILE ILE A . n A 1 179 ASP 179 173 173 ASP ASP A . n A 1 180 GLN 180 174 174 GLN GLN A . n A 1 181 ASP 181 175 175 ASP ASP A . n A 1 182 PRO 182 176 176 PRO PRO A . n A 1 183 VAL 183 177 177 VAL VAL A . n A 1 184 GLY 184 178 178 GLY GLY A . n A 1 185 THR 185 179 179 THR THR A . n A 1 186 MET 186 180 180 MET MET A . n A 1 187 PRO 187 181 181 PRO PRO A . n A 1 188 HIS 188 182 182 HIS HIS A . n A 1 189 ALA 189 183 183 ALA ALA A . n A 1 190 LEU 190 184 184 LEU LEU A . n A 1 191 SER 191 185 185 SER SER A . n A 1 192 ILE 192 186 186 ILE ILE A . n A 1 193 MET 193 187 187 MET MET A . n A 1 194 LEU 194 188 188 LEU LEU A . n A 1 195 GLY 195 189 189 GLY GLY A . n A 1 196 ASP 196 190 190 ASP ASP A . n A 1 197 GLU 197 191 191 GLU GLU A . n A 1 198 GLU 198 192 192 GLU GLU A . n A 1 199 ALA 199 193 193 ALA ALA A . n A 1 200 TRP 200 194 194 TRP TRP A . n A 1 201 LYS 201 195 195 LYS LYS A . n A 1 202 LEU 202 196 196 LEU LEU A . n A 1 203 THR 203 197 197 THR THR A . n A 1 204 LEU 204 198 198 LEU LEU A . n A 1 205 GLU 205 199 199 GLU GLU A . n A 1 206 ASN 206 200 200 ASN ASN A . n A 1 207 THR 207 201 201 THR THR A . n A 1 208 LYS 208 202 202 LYS LYS A . n A 1 209 ASN 209 203 203 ASN ASN A . n A 1 210 GLY 210 204 204 GLY GLY A . n A 1 211 GLN 211 205 205 GLN GLN A . n A 1 212 LYS 212 206 206 LYS LYS A . n A 1 213 SER 213 207 207 SER SER A . n A 1 214 VAL 214 208 208 VAL VAL A . n A 1 215 LEU 215 209 209 LEU LEU A . n A 1 216 LEU 216 210 210 LEU LEU A . n A 1 217 ILE 217 211 211 ILE ILE A . n A 1 218 ASP 218 212 212 ASP ASP A . n A 1 219 THR 219 213 213 THR THR A . n A 1 220 TYR 220 214 214 TYR TYR A . n A 1 221 MET 221 215 215 MET MET A . n A 1 222 ASP 222 216 216 ASP ASP A . n A 1 223 GLU 223 217 217 GLU GLU A . n A 1 224 LYS 224 218 218 LYS LYS A . n A 1 225 PHE 225 219 219 PHE PHE A . n A 1 226 ALA 226 220 220 ALA ALA A . n A 1 227 ALA 227 221 221 ALA ALA A . n A 1 228 ILE 228 222 222 ILE ILE A . n A 1 229 LYS 229 223 223 LYS LYS A . n A 1 230 ILE 230 224 224 ILE ILE A . n A 1 231 ALA 231 225 225 ALA ALA A . n A 1 232 GLU 232 226 226 GLU GLU A . n A 1 233 MET 233 227 227 MET MET A . n A 1 234 PHE 234 228 228 PHE PHE A . n A 1 235 ASP 235 229 229 ASP ASP A . n A 1 236 LYS 236 230 230 LYS LYS A . n A 1 237 VAL 237 231 231 VAL VAL A . n A 1 238 ASP 238 232 232 ASP ASP A . n A 1 239 TYR 239 233 233 TYR TYR A . n A 1 240 ILE 240 234 234 ILE ILE A . n A 1 241 ARG 241 235 235 ARG ARG A . n A 1 242 LEU 242 236 236 LEU LEU A . n A 1 243 ASP 243 237 237 ASP ASP A . n A 1 244 THR 244 238 238 THR THR A . n A 1 245 PRO 245 239 239 PRO PRO A . n A 1 246 SER 246 240 240 SER SER A . n A 1 247 SER 247 241 241 SER SER A . n A 1 248 ARG 248 242 242 ARG ARG A . n A 1 249 ARG 249 243 243 ARG ARG A . n A 1 250 GLY 250 244 244 GLY GLY A . n A 1 251 ASN 251 245 245 ASN ASN A . n A 1 252 PHE 252 246 246 PHE PHE A . n A 1 253 GLU 253 247 247 GLU GLU A . n A 1 254 ALA 254 248 248 ALA ALA A . n A 1 255 LEU 255 249 249 LEU LEU A . n A 1 256 ILE 256 250 250 ILE ILE A . n A 1 257 ARG 257 251 251 ARG ARG A . n A 1 258 GLU 258 252 252 GLU GLU A . n A 1 259 VAL 259 253 253 VAL VAL A . n A 1 260 ARG 260 254 254 ARG ARG A . n A 1 261 TRP 261 255 255 TRP TRP A . n A 1 262 GLU 262 256 256 GLU GLU A . n A 1 263 LEU 263 257 257 LEU LEU A . n A 1 264 ALA 264 258 258 ALA ALA A . n A 1 265 LEU 265 259 259 LEU LEU A . n A 1 266 ARG 266 260 260 ARG ARG A . n A 1 267 GLY 267 261 261 GLY GLY A . n A 1 268 ARG 268 262 262 ARG ARG A . n A 1 269 SER 269 263 263 SER SER A . n A 1 270 ASP 270 264 264 ASP ASP A . n A 1 271 ILE 271 265 265 ILE ILE A . n A 1 272 LYS 272 266 266 LYS LYS A . n A 1 273 ILE 273 267 267 ILE ILE A . n A 1 274 MET 274 268 268 MET MET A . n A 1 275 VAL 275 269 269 VAL VAL A . n A 1 276 SER 276 270 270 SER SER A . n A 1 277 GLY 277 271 271 GLY GLY A . n A 1 278 GLY 278 272 272 GLY GLY A . n A 1 279 LEU 279 273 273 LEU LEU A . n A 1 280 ASP 280 274 274 ASP ASP A . n A 1 281 GLU 281 275 275 GLU GLU A . n A 1 282 ASN 282 276 276 ASN ASN A . n A 1 283 THR 283 277 277 THR THR A . n A 1 284 VAL 284 278 278 VAL VAL A . n A 1 285 LYS 285 279 279 LYS LYS A . n A 1 286 LYS 286 280 280 LYS LYS A . n A 1 287 LEU 287 281 281 LEU LEU A . n A 1 288 ARG 288 282 282 ARG ARG A . n A 1 289 GLU 289 283 283 GLU GLU A . n A 1 290 ALA 290 284 284 ALA ALA A . n A 1 291 GLY 291 285 285 GLY GLY A . n A 1 292 ALA 292 286 286 ALA ALA A . n A 1 293 GLU 293 287 287 GLU GLU A . n A 1 294 ALA 294 288 288 ALA ALA A . n A 1 295 PHE 295 289 289 PHE PHE A . n A 1 296 GLY 296 290 290 GLY GLY A . n A 1 297 VAL 297 291 291 VAL VAL A . n A 1 298 GLY 298 292 292 GLY GLY A . n A 1 299 THR 299 293 293 THR THR A . n A 1 300 SER 300 294 294 SER SER A . n A 1 301 ILE 301 295 295 ILE ILE A . n A 1 302 SER 302 296 296 SER SER A . n A 1 303 SER 303 297 297 SER SER A . n A 1 304 ALA 304 298 298 ALA ALA A . n A 1 305 LYS 305 299 299 LYS LYS A . n A 1 306 PRO 306 300 300 PRO PRO A . n A 1 307 PHE 307 301 301 PHE PHE A . n A 1 308 ASP 308 302 302 ASP ASP A . n A 1 309 PHE 309 303 303 PHE PHE A . n A 1 310 ALA 310 304 304 ALA ALA A . n A 1 311 MET 311 305 305 MET MET A . n A 1 312 ASP 312 306 306 ASP ASP A . n A 1 313 ILE 313 307 307 ILE ILE A . n A 1 314 VAL 314 308 308 VAL VAL A . n A 1 315 GLU 315 309 309 GLU GLU A . n A 1 316 VAL 316 310 310 VAL VAL A . n A 1 317 ASN 317 311 311 ASN ASN A . n A 1 318 GLY 318 312 312 GLY GLY A . n A 1 319 LYS 319 313 313 LYS LYS A . n A 1 320 PRO 320 314 314 PRO PRO A . n A 1 321 GLU 321 315 315 GLU GLU A . n A 1 322 THR 322 316 316 THR THR A . n A 1 323 LYS 323 317 317 LYS LYS A . n A 1 324 ARG 324 318 318 ARG ARG A . n A 1 325 GLY 325 319 319 GLY GLY A . n A 1 326 LYS 326 320 320 LYS LYS A . n A 1 327 MET 327 321 321 MET MET A . n A 1 328 SER 328 322 322 SER SER A . n A 1 329 GLY 329 323 323 GLY GLY A . n A 1 330 ARG 330 324 324 ARG ARG A . n A 1 331 LYS 331 325 325 LYS LYS A . n A 1 332 ASN 332 326 326 ASN ASN A . n A 1 333 VAL 333 327 327 VAL VAL A . n A 1 334 LEU 334 328 328 LEU LEU A . n A 1 335 ARG 335 329 329 ARG ARG A . n A 1 336 CYS 336 330 330 CYS CYS A . n A 1 337 THR 337 331 331 THR THR A . n A 1 338 SER 338 332 332 SER SER A . n A 1 339 CYS 339 333 333 CYS CYS A . n A 1 340 HIS 340 334 334 HIS HIS A . n A 1 341 ARG 341 335 335 ARG ARG A . n A 1 342 ILE 342 336 336 ILE ILE A . n A 1 343 GLU 343 337 337 GLU GLU A . n A 1 344 VAL 344 338 338 VAL VAL A . n A 1 345 VAL 345 339 339 VAL VAL A . n A 1 346 PRO 346 340 340 PRO PRO A . n A 1 347 ALA 347 341 341 ALA ALA A . n A 1 348 ASN 348 342 342 ASN ASN A . n A 1 349 VAL 349 343 343 VAL VAL A . n A 1 350 GLN 350 344 344 GLN GLN A . n A 1 351 GLU 351 345 345 GLU GLU A . n A 1 352 LYS 352 346 346 LYS LYS A . n A 1 353 THR 353 347 347 THR THR A . n A 1 354 CYS 354 348 348 CYS CYS A . n A 1 355 ILE 355 349 349 ILE ILE A . n A 1 356 CYS 356 350 350 CYS CYS A . n A 1 357 GLY 357 351 351 GLY GLY A . n A 1 358 GLY 358 352 352 GLY GLY A . n A 1 359 SER 359 353 353 SER SER A . n A 1 360 MET 360 354 354 MET MET A . n A 1 361 GLN 361 355 355 GLN GLN A . n A 1 362 ASN 362 356 356 ASN ASN A . n A 1 363 LEU 363 357 357 LEU LEU A . n A 1 364 LEU 364 358 358 LEU LEU A . n A 1 365 VAL 365 359 359 VAL VAL A . n A 1 366 LYS 366 360 360 LYS LYS A . n A 1 367 TYR 367 361 361 TYR TYR A . n A 1 368 LEU 368 362 362 LEU LEU A . n A 1 369 SER 369 363 363 SER SER A . n A 1 370 HIS 370 364 364 HIS HIS A . n A 1 371 GLY 371 365 365 GLY GLY A . n A 1 372 LYS 372 366 366 LYS LYS A . n A 1 373 ARG 373 367 367 ARG ARG A . n A 1 374 THR 374 368 368 THR THR A . n A 1 375 SER 375 369 369 SER SER A . n A 1 376 GLU 376 370 370 GLU GLU A . n A 1 377 TYR 377 371 371 TYR TYR A . n A 1 378 PRO 378 372 372 PRO PRO A . n A 1 379 ARG 379 373 373 ARG ARG A . n A 1 380 PRO 380 374 374 PRO PRO A . n A 1 381 LYS 381 375 375 LYS LYS A . n A 1 382 GLU 382 376 376 GLU GLU A . n A 1 383 ILE 383 377 377 ILE ILE A . n A 1 384 ARG 384 378 378 ARG ARG A . n A 1 385 SER 385 379 379 SER SER A . n A 1 386 ARG 386 380 380 ARG ARG A . n A 1 387 SER 387 381 381 SER SER A . n A 1 388 MET 388 382 382 MET MET A . n A 1 389 LYS 389 383 383 LYS LYS A . n A 1 390 GLU 390 384 384 GLU GLU A . n A 1 391 LEU 391 385 385 LEU LEU A . n A 1 392 GLU 392 386 386 GLU GLU A . n A 1 393 TYR 393 387 387 TYR TYR A . n A 1 394 PHE 394 388 388 PHE PHE A . n A 1 395 LYS 395 389 389 LYS LYS A . n A 1 396 ASP 396 390 ? ? ? A . n A 1 397 ILE 397 391 ? ? ? A . n A 1 398 SER 398 392 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 401 HOH TIP A . B 2 HOH 2 402 402 HOH TIP A . B 2 HOH 3 403 403 HOH TIP A . B 2 HOH 4 404 404 HOH TIP A . B 2 HOH 5 405 405 HOH TIP A . B 2 HOH 6 406 406 HOH TIP A . B 2 HOH 7 407 407 HOH TIP A . B 2 HOH 8 408 408 HOH TIP A . B 2 HOH 9 409 409 HOH TIP A . B 2 HOH 10 410 410 HOH TIP A . B 2 HOH 11 411 411 HOH TIP A . B 2 HOH 12 412 412 HOH TIP A . B 2 HOH 13 413 413 HOH TIP A . B 2 HOH 14 414 414 HOH TIP A . B 2 HOH 15 415 415 HOH TIP A . B 2 HOH 16 416 416 HOH TIP A . B 2 HOH 17 417 417 HOH TIP A . B 2 HOH 18 418 418 HOH TIP A . B 2 HOH 19 419 419 HOH TIP A . B 2 HOH 20 420 420 HOH TIP A . B 2 HOH 21 421 421 HOH TIP A . B 2 HOH 22 422 422 HOH TIP A . B 2 HOH 23 423 423 HOH TIP A . B 2 HOH 24 424 424 HOH TIP A . B 2 HOH 25 425 425 HOH TIP A . B 2 HOH 26 426 426 HOH TIP A . B 2 HOH 27 427 427 HOH TIP A . B 2 HOH 28 428 428 HOH TIP A . B 2 HOH 29 429 429 HOH TIP A . B 2 HOH 30 430 430 HOH TIP A . B 2 HOH 31 431 431 HOH TIP A . B 2 HOH 32 432 432 HOH TIP A . B 2 HOH 33 433 433 HOH TIP A . B 2 HOH 34 434 434 HOH TIP A . B 2 HOH 35 435 435 HOH TIP A . B 2 HOH 36 436 436 HOH TIP A . B 2 HOH 37 437 437 HOH TIP A . B 2 HOH 38 438 438 HOH TIP A . B 2 HOH 39 439 439 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1YTD _cell.length_a 136.024 _cell.length_b 136.024 _cell.length_c 119.733 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YTD _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YTD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.69 _exptl_crystal.density_percent_sol 65.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris, 45% MPD, 0.2M ammonium acetate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-08-02 _diffrn_detector.details Monochromator # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.10490 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.10490 # _reflns.entry_id 1YTD _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 16303 _reflns.number_all 16687 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 95.4 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YTD _refine.ls_number_reflns_obs 15495 _refine.ls_number_reflns_all 16590 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 80058.48 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.95 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all 0.203 _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1541 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.1 _refine.aniso_B[1][1] 7.52 _refine.aniso_B[2][2] 7.52 _refine.aniso_B[3][3] -15.04 _refine.aniso_B[1][2] 9.53 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.326164 _refine.solvent_model_param_bsol 30.8672 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YTD _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.44 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.55 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3011 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 3050 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 19.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.86 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.60 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 7.54 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.16 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.07 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work 2097 _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.percent_reflns_obs 86.2 _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 233 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YTD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YTD _struct.title 'Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum, Native Structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YTD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;nicotinate phosphoribosyltransferase, type II phosphoribosyltransferase, zinc-knuckle motif, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center, BSGC, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HJ28_THEAC _struct_ref.pdbx_db_accession Q9HJ28 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLDVDLYAIPEGTIL FPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSAYIGGA DGVSGILGAKLIDQDPVGTMPHALSIMLGDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPS SRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKPETKRGK MSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFKDIS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YTD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 398 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HJ28 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 392 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 392 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YTD GLY A 1 ? UNP Q9HJ28 ? ? 'cloning artifact' -5 1 1 1YTD GLY A 2 ? UNP Q9HJ28 ? ? 'cloning artifact' -4 2 1 1YTD GLY A 3 ? UNP Q9HJ28 ? ? 'cloning artifact' -3 3 1 1YTD GLY A 4 ? UNP Q9HJ28 ? ? 'cloning artifact' -2 4 1 1YTD GLY A 5 ? UNP Q9HJ28 ? ? 'cloning artifact' -1 5 1 1YTD GLY A 6 ? UNP Q9HJ28 ? ? 'cloning artifact' 0 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 33730 ? 1 MORE -182 ? 1 'SSA (A^2)' 78270 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 136.0240000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 68.0120000000 -0.8660254038 -0.5000000000 0.0000000000 117.8002395244 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 68.0120000000 -0.8660254038 -0.5000000000 0.0000000000 117.8002395244 0.0000000000 0.0000000000 -1.0000000000 59.8665000000 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 136.0240000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 59.8665000000 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 59.8665000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 14 ? GLY A 21 ? SER A 8 GLY A 15 1 ? 8 HELX_P HELX_P2 2 VAL A 26 ? GLY A 36 ? VAL A 20 GLY A 30 1 ? 11 HELX_P HELX_P3 3 ASP A 37 ? ASP A 41 ? ASP A 31 ASP A 35 5 ? 5 HELX_P HELX_P4 4 GLY A 62 ? GLU A 71 ? GLY A 56 GLU A 65 1 ? 10 HELX_P HELX_P5 5 TYR A 105 ? GLY A 109 ? TYR A 99 GLY A 103 1 ? 5 HELX_P HELX_P6 6 TYR A 111 ? GLY A 137 ? TYR A 105 GLY A 131 1 ? 27 HELX_P HELX_P7 7 GLY A 145 ? MET A 149 ? GLY A 139 MET A 143 5 ? 5 HELX_P HELX_P8 8 HIS A 150 ? ALA A 152 ? HIS A 144 ALA A 146 5 ? 3 HELX_P HELX_P9 9 ILE A 153 ? GLY A 165 ? ILE A 147 GLY A 159 1 ? 13 HELX_P HELX_P10 10 GLY A 171 ? ASP A 179 ? GLY A 165 ASP A 173 1 ? 9 HELX_P HELX_P11 11 PRO A 187 ? GLY A 195 ? PRO A 181 GLY A 189 1 ? 9 HELX_P HELX_P12 12 GLY A 195 ? ASN A 206 ? GLY A 189 ASN A 200 1 ? 12 HELX_P HELX_P13 13 ASP A 222 ? GLU A 232 ? ASP A 216 GLU A 226 1 ? 11 HELX_P HELX_P14 14 PRO A 245 ? ARG A 249 ? PRO A 239 ARG A 243 5 ? 5 HELX_P HELX_P15 15 ASN A 251 ? ARG A 266 ? ASN A 245 ARG A 260 1 ? 16 HELX_P HELX_P16 16 ASP A 280 ? GLY A 291 ? ASP A 274 GLY A 285 1 ? 12 HELX_P HELX_P17 17 GLY A 298 ? SER A 303 ? GLY A 292 SER A 297 1 ? 6 HELX_P HELX_P18 18 ARG A 379 ? GLU A 392 ? ARG A 373 GLU A 386 1 ? 14 HELX_P HELX_P19 19 TYR A 393 ? LYS A 395 ? TYR A 387 LYS A 389 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 106 SG ? ? A CYS 33 A CYS 100 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 336 SG ? ? ? 1_555 A CYS 354 SG ? ? A CYS 330 A CYS 348 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 336 SG ? ? ? 1_555 A CYS 356 SG ? ? A CYS 330 A CYS 350 1_555 ? ? ? ? ? ? ? 2.684 ? ? disulf4 disulf ? ? A CYS 339 SG ? ? ? 1_555 A CYS 356 SG ? ? A CYS 333 A CYS 350 1_555 ? ? ? ? ? ? ? 2.260 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 39 ? CYS A 106 ? CYS A 33 ? 1_555 CYS A 100 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 336 ? CYS A 354 ? CYS A 330 ? 1_555 CYS A 348 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 336 ? CYS A 356 ? CYS A 330 ? 1_555 CYS A 350 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 339 ? CYS A 356 ? CYS A 333 ? 1_555 CYS A 350 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 6 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 319 ? PRO A 320 ? LYS A 313 PRO A 314 A 2 PHE A 309 ? VAL A 316 ? PHE A 303 VAL A 310 A 3 ARG A 43 ? VAL A 50 ? ARG A 37 VAL A 44 A 4 PRO A 97 ? ARG A 104 ? PRO A 91 ARG A 98 A 5 VAL A 75 ? ALA A 79 ? VAL A 69 ALA A 73 A 6 VAL A 365 ? SER A 369 ? VAL A 359 SER A 363 A 7 LYS A 372 ? ARG A 373 ? LYS A 366 ARG A 367 B 1 ILE A 58 ? ASN A 59 ? ILE A 52 ASN A 53 B 2 ILE A 85 ? LEU A 86 ? ILE A 79 LEU A 80 C 1 GLY A 168 ? VAL A 169 ? GLY A 162 VAL A 163 C 2 PHE A 141 ? SER A 143 ? PHE A 135 SER A 137 C 3 ALA A 294 ? VAL A 297 ? ALA A 288 VAL A 291 C 4 LYS A 272 ? SER A 276 ? LYS A 266 SER A 270 C 5 TYR A 239 ? LEU A 242 ? TYR A 233 LEU A 236 C 6 VAL A 214 ? LEU A 216 ? VAL A 208 LEU A 210 D 1 ILE A 342 ? PRO A 346 ? ILE A 336 PRO A 340 D 2 LYS A 331 ? CYS A 336 ? LYS A 325 CYS A 330 D 3 SER A 359 ? ASN A 362 ? SER A 353 ASN A 356 D 4 LYS A 352 ? THR A 353 ? LYS A 346 THR A 347 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 319 ? O LYS A 313 N VAL A 316 ? N VAL A 310 A 2 3 O VAL A 314 ? O VAL A 308 N ALA A 45 ? N ALA A 39 A 3 4 N VAL A 44 ? N VAL A 38 O GLY A 103 ? O GLY A 97 A 4 5 O ARG A 100 ? O ARG A 94 N TYR A 78 ? N TYR A 72 A 5 6 N ALA A 79 ? N ALA A 73 O VAL A 365 ? O VAL A 359 A 6 7 N SER A 369 ? N SER A 363 O LYS A 372 ? O LYS A 366 B 1 2 N ILE A 58 ? N ILE A 52 O LEU A 86 ? O LEU A 80 C 1 2 O GLY A 168 ? O GLY A 162 N SER A 143 ? N SER A 137 C 2 3 N PHE A 142 ? N PHE A 136 O PHE A 295 ? O PHE A 289 C 3 4 O ALA A 294 ? O ALA A 288 N VAL A 275 ? N VAL A 269 C 4 5 O MET A 274 ? O MET A 268 N ILE A 240 ? N ILE A 234 C 5 6 O ARG A 241 ? O ARG A 235 N LEU A 215 ? N LEU A 209 D 1 2 O VAL A 345 ? O VAL A 339 N ASN A 332 ? N ASN A 326 D 2 3 N ARG A 335 ? N ARG A 329 O GLN A 361 ? O GLN A 355 D 3 4 O MET A 360 ? O MET A 354 N LYS A 352 ? N LYS A 346 # _pdbx_entry_details.entry_id 1YTD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 424 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 433 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_665 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLY _pdbx_validate_rmsd_bond.auth_seq_id_1 351 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLY _pdbx_validate_rmsd_bond.auth_seq_id_2 351 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.571 _pdbx_validate_rmsd_bond.bond_target_value 1.456 _pdbx_validate_rmsd_bond.bond_deviation 0.115 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 350 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 351 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 351 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 108.59 _pdbx_validate_rmsd_angle.angle_target_value 122.30 _pdbx_validate_rmsd_angle.angle_deviation -13.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 2 ? ? -117.82 -168.52 2 1 ASP A 31 ? ? -39.12 -29.77 3 1 ASN A 203 ? ? 51.14 -169.58 4 1 MET A 227 ? ? -132.67 -33.33 5 1 THR A 238 ? ? -1.30 117.61 6 1 ILE A 295 ? ? -94.14 -60.36 7 1 THR A 331 ? ? -63.13 4.59 8 1 SER A 332 ? ? -119.63 -105.25 9 1 CYS A 333 ? ? -56.61 -0.03 10 1 ILE A 349 ? ? -68.28 96.81 11 1 CYS A 350 ? ? 140.68 121.58 12 1 PHE A 388 ? ? -116.68 50.30 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Berkeley Structural Genomics Center' _pdbx_SG_project.initial_of_center BSGC # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A GLY -4 ? A GLY 2 3 1 Y 1 A GLY -3 ? A GLY 3 4 1 Y 1 A GLY -2 ? A GLY 4 5 1 Y 1 A GLY -1 ? A GLY 5 6 1 Y 1 A GLY 0 ? A GLY 6 7 1 Y 1 A ASP 390 ? A ASP 396 8 1 Y 1 A ILE 391 ? A ILE 397 9 1 Y 1 A SER 392 ? A SER 398 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 1YTD _atom_sites.fract_transf_matrix[1][1] 0.007352 _atom_sites.fract_transf_matrix[1][2] 0.004244 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008489 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008352 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_