HEADER TRANSFERASE 10-FEB-05 1YTE TITLE CRYSTAL STRUCTURE OF A NICOTINATE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 THERMOPLASMA ACIDOPHILUM, PHOSPHORIBOSYLPYROPHOSPHATE BOUND STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE PHOSPHORIBOSYLTRANSFERASE FROM THERMOPLASMA COMPND 3 ACIDOPHILUM; COMPND 4 CHAIN: A; COMPND 5 EC: 2.4.2.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 273075; SOURCE 4 STRAIN: DSM 1728; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3)/PSJS1244 KEYWDS NICOTINATE PHOSPHORIBOSYLTRANSFERASE, TYPE II KEYWDS 2 PHOSPHORIBOSYLTRANSFERASE, ZINC-KNUCKLE MOTIF, STRUCTURAL GENOMICS, KEYWDS 3 PSI, PROTEIN STRUCTURE INITIATIVE, BERKELEY STRUCTURAL GENOMICS KEYWDS 4 CENTER, BSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.SHIN,BERKELEY STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 5 16-OCT-24 1YTE 1 REMARK ATOM REVDAT 4 13-JUL-11 1YTE 1 VERSN REVDAT 3 24-FEB-09 1YTE 1 VERSN REVDAT 2 17-MAY-05 1YTE 1 JRNL REVDAT 1 08-MAR-05 1YTE 0 JRNL AUTH D.H.SHIN,N.OGANESYAN,J.JANCARIK,H.YOKOTA,R.KIM,S.H.KIM JRNL TITL CRYSTAL STRUCTURE OF A NICOTINATE PHOSPHORIBOSYLTRANSFERASE JRNL TITL 2 FROM THERMOPLASMA ACIDOPHILUM. JRNL REF J.BIOL.CHEM. V. 280 18326 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15753098 JRNL DOI 10.1074/JBC.M501622200 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 63305.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 16117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2257 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 234 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.11000 REMARK 3 B22 (A**2) : 9.11000 REMARK 3 B33 (A**2) : -18.23000 REMARK 3 B12 (A**2) : 9.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.420 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.360; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 34.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PRPP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28230 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 45% MPD, 0.2M AMMONIUM REMARK 280 ACETATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.08300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.08300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.08300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.08300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.08300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.08300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 37980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -235.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 136.06100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 68.03050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 117.83228 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 68.03050 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 117.83228 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.08300 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 136.06100 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.08300 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.08300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 ASP A 390 REMARK 465 ILE A 391 REMARK 465 SER A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 572 O HOH A 572 11655 0.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 47 121.36 -38.94 REMARK 500 ASP A 49 30.68 -86.46 REMARK 500 ASN A 203 -162.50 51.26 REMARK 500 THR A 238 119.89 -20.88 REMARK 500 ASN A 245 83.40 -153.21 REMARK 500 THR A 293 -56.60 -23.77 REMARK 500 SER A 332 -88.03 -101.23 REMARK 500 CYS A 350 84.38 80.94 REMARK 500 PHE A 388 53.09 -115.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YTD RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: BSGCAIR30619 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1YTK RELATED DB: PDB REMARK 900 WITH NICOTINATE MONONUCLEOTIDE DBREF 1YTE A 1 392 UNP Q9HJ28 Q9HJ28_THEAC 1 392 SEQADV 1YTE GLY A -5 UNP Q9HJ28 CLONING ARTIFACT SEQADV 1YTE GLY A -4 UNP Q9HJ28 CLONING ARTIFACT SEQADV 1YTE GLY A -3 UNP Q9HJ28 CLONING ARTIFACT SEQADV 1YTE GLY A -2 UNP Q9HJ28 CLONING ARTIFACT SEQADV 1YTE GLY A -1 UNP Q9HJ28 CLONING ARTIFACT SEQADV 1YTE GLY A 0 UNP Q9HJ28 CLONING ARTIFACT SEQRES 1 A 398 GLY GLY GLY GLY GLY GLY MET ASN VAL PHE ASN THR ALA SEQRES 2 A 398 SER ASP GLU ASP ILE LYS LYS GLY LEU ALA SER ASP VAL SEQRES 3 A 398 TYR PHE GLU ARG THR ILE SER ALA ILE GLY ASP LYS CYS SEQRES 4 A 398 ASN ASP LEU ARG VAL ALA MET GLU ALA THR VAL SER GLY SEQRES 5 A 398 PRO LEU ASP THR TRP ILE ASN PHE THR GLY LEU ASP GLU SEQRES 6 A 398 VAL LEU LYS LEU LEU GLU GLY LEU ASP VAL ASP LEU TYR SEQRES 7 A 398 ALA ILE PRO GLU GLY THR ILE LEU PHE PRO ARG ASP ALA SEQRES 8 A 398 ASN GLY LEU PRO VAL PRO PHE ILE ARG VAL GLU GLY ARG SEQRES 9 A 398 TYR CYS ASP PHE GLY MET TYR GLU THR ALA ILE LEU GLY SEQRES 10 A 398 PHE ILE CYS GLN ALA SER GLY ILE SER THR LYS ALA SER SEQRES 11 A 398 LYS VAL ARG LEU ALA ALA GLY ASP SER PRO PHE PHE SER SEQRES 12 A 398 PHE GLY ILE ARG ARG MET HIS PRO ALA ILE SER PRO MET SEQRES 13 A 398 ILE ASP ARG SER ALA TYR ILE GLY GLY ALA ASP GLY VAL SEQRES 14 A 398 SER GLY ILE LEU GLY ALA LYS LEU ILE ASP GLN ASP PRO SEQRES 15 A 398 VAL GLY THR MET PRO HIS ALA LEU SER ILE MET LEU GLY SEQRES 16 A 398 ASP GLU GLU ALA TRP LYS LEU THR LEU GLU ASN THR LYS SEQRES 17 A 398 ASN GLY GLN LYS SER VAL LEU LEU ILE ASP THR TYR MET SEQRES 18 A 398 ASP GLU LYS PHE ALA ALA ILE LYS ILE ALA GLU MET PHE SEQRES 19 A 398 ASP LYS VAL ASP TYR ILE ARG LEU ASP THR PRO SER SER SEQRES 20 A 398 ARG ARG GLY ASN PHE GLU ALA LEU ILE ARG GLU VAL ARG SEQRES 21 A 398 TRP GLU LEU ALA LEU ARG GLY ARG SER ASP ILE LYS ILE SEQRES 22 A 398 MET VAL SER GLY GLY LEU ASP GLU ASN THR VAL LYS LYS SEQRES 23 A 398 LEU ARG GLU ALA GLY ALA GLU ALA PHE GLY VAL GLY THR SEQRES 24 A 398 SER ILE SER SER ALA LYS PRO PHE ASP PHE ALA MET ASP SEQRES 25 A 398 ILE VAL GLU VAL ASN GLY LYS PRO GLU THR LYS ARG GLY SEQRES 26 A 398 LYS MET SER GLY ARG LYS ASN VAL LEU ARG CYS THR SER SEQRES 27 A 398 CYS HIS ARG ILE GLU VAL VAL PRO ALA ASN VAL GLN GLU SEQRES 28 A 398 LYS THR CYS ILE CYS GLY GLY SER MET GLN ASN LEU LEU SEQRES 29 A 398 VAL LYS TYR LEU SER HIS GLY LYS ARG THR SER GLU TYR SEQRES 30 A 398 PRO ARG PRO LYS GLU ILE ARG SER ARG SER MET LYS GLU SEQRES 31 A 398 LEU GLU TYR PHE LYS ASP ILE SER HET PCP A 401 22 HETNAM PCP 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4- HETNAM 2 PCP BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE HETSYN PCP CARBOXYLIC PRPP; CPRPP FORMUL 2 PCP C6 H15 O13 P3 FORMUL 3 HOH *76(H2 O) HELIX 1 1 SER A 8 LYS A 14 1 7 HELIX 2 2 VAL A 20 GLY A 30 1 11 HELIX 3 3 ASP A 31 ASN A 34 5 4 HELIX 4 4 GLY A 56 GLU A 65 1 10 HELIX 5 5 TYR A 99 GLY A 103 1 5 HELIX 6 6 TYR A 105 GLY A 131 1 27 HELIX 7 7 GLY A 139 MET A 143 5 5 HELIX 8 8 HIS A 144 ALA A 146 5 3 HELIX 9 9 ILE A 147 GLY A 159 1 13 HELIX 10 10 GLY A 165 ASP A 173 1 9 HELIX 11 11 PRO A 181 GLY A 189 1 9 HELIX 12 12 GLY A 189 ASN A 200 1 12 HELIX 13 13 ASP A 216 GLU A 226 1 11 HELIX 14 14 PRO A 239 ARG A 243 5 5 HELIX 15 15 ASN A 245 ARG A 260 1 16 HELIX 16 16 ASP A 274 GLY A 285 1 12 HELIX 17 17 GLY A 292 SER A 297 1 6 HELIX 18 18 ARG A 373 GLU A 386 1 14 SHEET 1 A 7 LYS A 313 PRO A 314 0 SHEET 2 A 7 PHE A 303 VAL A 310 -1 N VAL A 310 O LYS A 313 SHEET 3 A 7 ARG A 37 VAL A 44 -1 N ALA A 39 O VAL A 308 SHEET 4 A 7 PRO A 91 ARG A 98 -1 O GLY A 97 N VAL A 38 SHEET 5 A 7 ASP A 70 ALA A 73 -1 N TYR A 72 O ARG A 94 SHEET 6 A 7 VAL A 359 SER A 363 -1 O VAL A 359 N ALA A 73 SHEET 7 A 7 LYS A 366 ARG A 367 -1 O LYS A 366 N SER A 363 SHEET 1 B 2 ILE A 52 ASN A 53 0 SHEET 2 B 2 ILE A 79 LEU A 80 -1 O LEU A 80 N ILE A 52 SHEET 1 C 6 GLY A 162 VAL A 163 0 SHEET 2 C 6 PHE A 135 SER A 137 1 N SER A 137 O GLY A 162 SHEET 3 C 6 ALA A 288 VAL A 291 1 O VAL A 291 N PHE A 136 SHEET 4 C 6 LYS A 266 SER A 270 1 N VAL A 269 O ALA A 288 SHEET 5 C 6 TYR A 233 LEU A 236 1 N ILE A 234 O MET A 268 SHEET 6 C 6 VAL A 208 LEU A 210 1 N LEU A 209 O ARG A 235 SHEET 1 D 4 ILE A 336 PRO A 340 0 SHEET 2 D 4 LYS A 325 CYS A 330 -1 N ASN A 326 O VAL A 339 SHEET 3 D 4 SER A 353 ASN A 356 -1 O GLN A 355 N ARG A 329 SHEET 4 D 4 LYS A 346 THR A 347 -1 N LYS A 346 O MET A 354 SSBOND 1 CYS A 33 CYS A 100 1555 1555 2.03 SSBOND 2 CYS A 330 CYS A 348 1555 1555 2.07 SITE 1 AC1 13 SER A 45 ARG A 142 PRO A 239 SER A 240 SITE 2 AC1 13 GLY A 272 GLY A 292 THR A 293 ASP A 302 SITE 3 AC1 13 HOH A 502 HOH A 512 HOH A 515 HOH A 527 SITE 4 AC1 13 HOH A 573 CRYST1 136.061 136.061 120.166 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007350 0.004243 0.000000 0.00000 SCALE2 0.000000 0.008487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008322 0.00000