data_1YTR # _entry.id 1YTR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YTR pdb_00001ytr 10.2210/pdb1ytr/pdb RCSB RCSB031915 ? ? WWPDB D_1000031915 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YTR _pdbx_database_status.recvd_initial_deposition_date 2005-02-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kristiansen, P.E.' 1 'Fimland, G.' 2 'Mantzilas, D.' 3 'Nissen-Meyer, J.' 4 # _citation.id primary _citation.title 'Structure and mode of action of the membrane-permeabilizing antimicrobial peptide pheromone plantaricin A' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 22945 _citation.page_last 22950 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15805109 _citation.pdbx_database_id_DOI 10.1074/jbc.M501620200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kristiansen, P.E.' 1 ? primary 'Fimland, G.' 2 ? primary 'Mantzilas, D.' 3 ? primary 'Nissen-Meyer, J.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Bacteriocin plantaricin A' _entity.formula_weight 2991.594 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KSSAYSLQMGATAIKQVKKLFKKWGW _entity_poly.pdbx_seq_one_letter_code_can KSSAYSLQMGATAIKQVKKLFKKWGW _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 SER n 1 3 SER n 1 4 ALA n 1 5 TYR n 1 6 SER n 1 7 LEU n 1 8 GLN n 1 9 MET n 1 10 GLY n 1 11 ALA n 1 12 THR n 1 13 ALA n 1 14 ILE n 1 15 LYS n 1 16 GLN n 1 17 VAL n 1 18 LYS n 1 19 LYS n 1 20 LEU n 1 21 PHE n 1 22 LYS n 1 23 LYS n 1 24 TRP n 1 25 GLY n 1 26 TRP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized. The sequence of the peptide is naturally found in Lactobacillus plantarum.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TRP 26 26 26 TRP TRP A . n # _exptl.entry_id 1YTR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1YTR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YTR _struct.title 'NMR structure of plantaricin a in dpc micelles, 20 structures' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YTR _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'antibiotic, pheromone, amphipathic helix, micelle' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLNA_LACPL _struct_ref.pdbx_db_accession P80214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KSSAYSLQMGATAIKQVKKLFKKWGW _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YTR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P80214 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 48 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 11 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 22 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 11 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 22 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -141.32 -58.51 2 1 ALA A 4 ? ? 62.06 122.49 3 1 GLN A 8 ? ? 72.19 -164.34 4 1 MET A 9 ? ? -175.38 -40.26 5 1 ALA A 11 ? ? -167.91 -99.11 6 2 ALA A 4 ? ? 179.92 136.92 7 2 TYR A 5 ? ? -159.32 56.60 8 2 SER A 6 ? ? 87.65 -40.77 9 2 LEU A 7 ? ? -53.11 105.05 10 2 GLN A 8 ? ? -170.98 -40.48 11 2 ALA A 11 ? ? -165.04 -62.93 12 3 SER A 2 ? ? -178.74 104.43 13 3 ALA A 4 ? ? -174.49 89.60 14 3 TYR A 5 ? ? -106.94 57.09 15 3 SER A 6 ? ? 58.10 173.34 16 3 GLN A 8 ? ? 63.40 116.42 17 3 ALA A 11 ? ? -174.81 -70.98 18 4 SER A 2 ? ? 68.43 117.61 19 4 ALA A 4 ? ? -51.84 171.46 20 4 SER A 6 ? ? 161.50 -28.47 21 4 LEU A 7 ? ? -162.93 -62.34 22 4 GLN A 8 ? ? 85.76 136.61 23 4 ALA A 11 ? ? -173.38 -53.72 24 5 SER A 2 ? ? 40.91 80.84 25 5 ALA A 4 ? ? -157.21 -63.80 26 5 TYR A 5 ? ? 39.06 81.68 27 5 SER A 6 ? ? 59.75 162.44 28 5 MET A 9 ? ? -163.46 -50.94 29 5 ALA A 11 ? ? -174.08 -72.52 30 5 TRP A 24 ? ? -72.00 -71.51 31 6 SER A 3 ? ? 69.39 -63.01 32 6 LEU A 7 ? ? -57.81 -106.03 33 6 MET A 9 ? ? -145.05 -46.38 34 6 ALA A 11 ? ? 166.93 -75.89 35 7 SER A 3 ? ? -160.33 92.02 36 7 LEU A 7 ? ? -139.15 -47.53 37 7 ALA A 11 ? ? -157.42 -60.09 38 8 SER A 2 ? ? -163.63 89.48 39 8 SER A 3 ? ? 68.30 -68.45 40 8 ALA A 4 ? ? 42.84 -144.64 41 8 SER A 6 ? ? 64.61 153.01 42 8 LEU A 7 ? ? -126.45 -55.98 43 8 MET A 9 ? ? 179.96 -37.09 44 8 ALA A 11 ? ? -172.85 -66.14 45 8 TRP A 24 ? ? -70.63 -75.36 46 9 TYR A 5 ? ? -148.05 54.60 47 9 GLN A 8 ? ? -166.44 116.38 48 9 MET A 9 ? ? -149.87 -55.94 49 9 ALA A 11 ? ? -151.05 -78.68 50 10 SER A 2 ? ? 69.86 -60.39 51 10 SER A 3 ? ? 177.74 -60.16 52 10 ALA A 4 ? ? 61.73 145.14 53 10 TYR A 5 ? ? -174.29 59.22 54 10 SER A 6 ? ? -145.56 -46.12 55 10 LEU A 7 ? ? 47.50 93.79 56 10 MET A 9 ? ? -168.90 -40.37 57 10 ALA A 11 ? ? 174.11 -52.15 58 11 SER A 3 ? ? -112.09 76.58 59 11 ALA A 4 ? ? -177.68 -62.47 60 11 TYR A 5 ? ? 38.63 81.64 61 11 SER A 6 ? ? 55.74 166.91 62 11 LEU A 7 ? ? -142.22 -49.59 63 11 MET A 9 ? ? -165.72 -44.70 64 11 ALA A 11 ? ? 163.53 -41.25 65 12 GLN A 8 ? ? -124.67 -112.22 66 12 MET A 9 ? ? 178.33 -34.21 67 12 ALA A 11 ? ? -171.06 -53.29 68 13 SER A 2 ? ? 178.29 108.58 69 13 SER A 6 ? ? 177.75 167.55 70 13 GLN A 8 ? ? -142.45 -104.87 71 13 MET A 9 ? ? 169.47 -37.72 72 13 ALA A 11 ? ? -149.11 -101.35 73 14 SER A 2 ? ? 64.07 105.81 74 14 SER A 3 ? ? 53.60 100.09 75 14 ALA A 4 ? ? -139.02 -76.22 76 14 TYR A 5 ? ? -174.07 34.07 77 14 SER A 6 ? ? -39.95 137.08 78 14 GLN A 8 ? ? 59.47 115.35 79 14 MET A 9 ? ? -161.05 -46.33 80 14 ALA A 11 ? ? -175.60 -55.91 81 15 SER A 2 ? ? -150.81 -58.84 82 15 ALA A 4 ? ? -138.82 -145.69 83 15 LEU A 7 ? ? -163.45 -58.36 84 15 MET A 9 ? ? -178.18 -39.32 85 15 ALA A 11 ? ? -156.11 -76.67 86 16 SER A 3 ? ? -111.35 76.27 87 16 LEU A 7 ? ? -136.69 -59.24 88 16 MET A 9 ? ? -144.56 -49.43 89 16 ALA A 11 ? ? -163.39 -55.55 90 17 ALA A 4 ? ? -170.94 -59.80 91 17 TYR A 5 ? ? 46.82 76.25 92 17 SER A 6 ? ? -167.31 -41.82 93 17 LEU A 7 ? ? -56.79 105.03 94 17 MET A 9 ? ? -150.33 -45.45 95 17 ALA A 11 ? ? 177.39 -77.31 96 17 ALA A 13 ? ? -38.89 -38.37 97 18 MET A 9 ? ? -157.71 -52.33 98 18 ALA A 11 ? ? 171.90 -47.65 99 19 SER A 2 ? ? 49.00 91.20 100 19 SER A 6 ? ? 159.69 -27.16 101 19 MET A 9 ? ? -164.62 -50.12 102 19 ALA A 11 ? ? -178.23 -56.61 103 20 SER A 3 ? ? -160.81 -70.12 104 20 ALA A 4 ? ? 172.08 122.56 105 20 GLN A 8 ? ? 65.32 121.36 106 20 MET A 9 ? ? -161.01 -54.20 107 20 ALA A 11 ? ? 163.60 -41.72 # _pdbx_nmr_ensemble.entry_id 1YTR _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1YTR _pdbx_nmr_representative.conformer_id 20 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.9mM PlnA in 100mM DPC, 10% D2O, 90% H20' _pdbx_nmr_sample_details.solvent_system '10% D2O, 90% H20' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 DQCOSY 1 4 1 '1H-15N HSQC' 1 # _pdbx_nmr_refine.entry_id 1YTR _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 1.1 'Guntert P' 1 'structure solution' CYANA ? ? 2 'structure solution' 'TALOS SIMULATED ANNEALING' ANNEALING ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLN N N N N 14 GLN CA C N S 15 GLN C C N N 16 GLN O O N N 17 GLN CB C N N 18 GLN CG C N N 19 GLN CD C N N 20 GLN OE1 O N N 21 GLN NE2 N N N 22 GLN OXT O N N 23 GLN H H N N 24 GLN H2 H N N 25 GLN HA H N N 26 GLN HB2 H N N 27 GLN HB3 H N N 28 GLN HG2 H N N 29 GLN HG3 H N N 30 GLN HE21 H N N 31 GLN HE22 H N N 32 GLN HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 ILE N N N N 44 ILE CA C N S 45 ILE C C N N 46 ILE O O N N 47 ILE CB C N S 48 ILE CG1 C N N 49 ILE CG2 C N N 50 ILE CD1 C N N 51 ILE OXT O N N 52 ILE H H N N 53 ILE H2 H N N 54 ILE HA H N N 55 ILE HB H N N 56 ILE HG12 H N N 57 ILE HG13 H N N 58 ILE HG21 H N N 59 ILE HG22 H N N 60 ILE HG23 H N N 61 ILE HD11 H N N 62 ILE HD12 H N N 63 ILE HD13 H N N 64 ILE HXT H N N 65 LEU N N N N 66 LEU CA C N S 67 LEU C C N N 68 LEU O O N N 69 LEU CB C N N 70 LEU CG C N N 71 LEU CD1 C N N 72 LEU CD2 C N N 73 LEU OXT O N N 74 LEU H H N N 75 LEU H2 H N N 76 LEU HA H N N 77 LEU HB2 H N N 78 LEU HB3 H N N 79 LEU HG H N N 80 LEU HD11 H N N 81 LEU HD12 H N N 82 LEU HD13 H N N 83 LEU HD21 H N N 84 LEU HD22 H N N 85 LEU HD23 H N N 86 LEU HXT H N N 87 LYS N N N N 88 LYS CA C N S 89 LYS C C N N 90 LYS O O N N 91 LYS CB C N N 92 LYS CG C N N 93 LYS CD C N N 94 LYS CE C N N 95 LYS NZ N N N 96 LYS OXT O N N 97 LYS H H N N 98 LYS H2 H N N 99 LYS HA H N N 100 LYS HB2 H N N 101 LYS HB3 H N N 102 LYS HG2 H N N 103 LYS HG3 H N N 104 LYS HD2 H N N 105 LYS HD3 H N N 106 LYS HE2 H N N 107 LYS HE3 H N N 108 LYS HZ1 H N N 109 LYS HZ2 H N N 110 LYS HZ3 H N N 111 LYS HXT H N N 112 MET N N N N 113 MET CA C N S 114 MET C C N N 115 MET O O N N 116 MET CB C N N 117 MET CG C N N 118 MET SD S N N 119 MET CE C N N 120 MET OXT O N N 121 MET H H N N 122 MET H2 H N N 123 MET HA H N N 124 MET HB2 H N N 125 MET HB3 H N N 126 MET HG2 H N N 127 MET HG3 H N N 128 MET HE1 H N N 129 MET HE2 H N N 130 MET HE3 H N N 131 MET HXT H N N 132 PHE N N N N 133 PHE CA C N S 134 PHE C C N N 135 PHE O O N N 136 PHE CB C N N 137 PHE CG C Y N 138 PHE CD1 C Y N 139 PHE CD2 C Y N 140 PHE CE1 C Y N 141 PHE CE2 C Y N 142 PHE CZ C Y N 143 PHE OXT O N N 144 PHE H H N N 145 PHE H2 H N N 146 PHE HA H N N 147 PHE HB2 H N N 148 PHE HB3 H N N 149 PHE HD1 H N N 150 PHE HD2 H N N 151 PHE HE1 H N N 152 PHE HE2 H N N 153 PHE HZ H N N 154 PHE HXT H N N 155 SER N N N N 156 SER CA C N S 157 SER C C N N 158 SER O O N N 159 SER CB C N N 160 SER OG O N N 161 SER OXT O N N 162 SER H H N N 163 SER H2 H N N 164 SER HA H N N 165 SER HB2 H N N 166 SER HB3 H N N 167 SER HG H N N 168 SER HXT H N N 169 THR N N N N 170 THR CA C N S 171 THR C C N N 172 THR O O N N 173 THR CB C N R 174 THR OG1 O N N 175 THR CG2 C N N 176 THR OXT O N N 177 THR H H N N 178 THR H2 H N N 179 THR HA H N N 180 THR HB H N N 181 THR HG1 H N N 182 THR HG21 H N N 183 THR HG22 H N N 184 THR HG23 H N N 185 THR HXT H N N 186 TRP N N N N 187 TRP CA C N S 188 TRP C C N N 189 TRP O O N N 190 TRP CB C N N 191 TRP CG C Y N 192 TRP CD1 C Y N 193 TRP CD2 C Y N 194 TRP NE1 N Y N 195 TRP CE2 C Y N 196 TRP CE3 C Y N 197 TRP CZ2 C Y N 198 TRP CZ3 C Y N 199 TRP CH2 C Y N 200 TRP OXT O N N 201 TRP H H N N 202 TRP H2 H N N 203 TRP HA H N N 204 TRP HB2 H N N 205 TRP HB3 H N N 206 TRP HD1 H N N 207 TRP HE1 H N N 208 TRP HE3 H N N 209 TRP HZ2 H N N 210 TRP HZ3 H N N 211 TRP HH2 H N N 212 TRP HXT H N N 213 TYR N N N N 214 TYR CA C N S 215 TYR C C N N 216 TYR O O N N 217 TYR CB C N N 218 TYR CG C Y N 219 TYR CD1 C Y N 220 TYR CD2 C Y N 221 TYR CE1 C Y N 222 TYR CE2 C Y N 223 TYR CZ C Y N 224 TYR OH O N N 225 TYR OXT O N N 226 TYR H H N N 227 TYR H2 H N N 228 TYR HA H N N 229 TYR HB2 H N N 230 TYR HB3 H N N 231 TYR HD1 H N N 232 TYR HD2 H N N 233 TYR HE1 H N N 234 TYR HE2 H N N 235 TYR HH H N N 236 TYR HXT H N N 237 VAL N N N N 238 VAL CA C N S 239 VAL C C N N 240 VAL O O N N 241 VAL CB C N N 242 VAL CG1 C N N 243 VAL CG2 C N N 244 VAL OXT O N N 245 VAL H H N N 246 VAL H2 H N N 247 VAL HA H N N 248 VAL HB H N N 249 VAL HG11 H N N 250 VAL HG12 H N N 251 VAL HG13 H N N 252 VAL HG21 H N N 253 VAL HG22 H N N 254 VAL HG23 H N N 255 VAL HXT H N N 256 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLN N CA sing N N 13 GLN N H sing N N 14 GLN N H2 sing N N 15 GLN CA C sing N N 16 GLN CA CB sing N N 17 GLN CA HA sing N N 18 GLN C O doub N N 19 GLN C OXT sing N N 20 GLN CB CG sing N N 21 GLN CB HB2 sing N N 22 GLN CB HB3 sing N N 23 GLN CG CD sing N N 24 GLN CG HG2 sing N N 25 GLN CG HG3 sing N N 26 GLN CD OE1 doub N N 27 GLN CD NE2 sing N N 28 GLN NE2 HE21 sing N N 29 GLN NE2 HE22 sing N N 30 GLN OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 ILE N CA sing N N 41 ILE N H sing N N 42 ILE N H2 sing N N 43 ILE CA C sing N N 44 ILE CA CB sing N N 45 ILE CA HA sing N N 46 ILE C O doub N N 47 ILE C OXT sing N N 48 ILE CB CG1 sing N N 49 ILE CB CG2 sing N N 50 ILE CB HB sing N N 51 ILE CG1 CD1 sing N N 52 ILE CG1 HG12 sing N N 53 ILE CG1 HG13 sing N N 54 ILE CG2 HG21 sing N N 55 ILE CG2 HG22 sing N N 56 ILE CG2 HG23 sing N N 57 ILE CD1 HD11 sing N N 58 ILE CD1 HD12 sing N N 59 ILE CD1 HD13 sing N N 60 ILE OXT HXT sing N N 61 LEU N CA sing N N 62 LEU N H sing N N 63 LEU N H2 sing N N 64 LEU CA C sing N N 65 LEU CA CB sing N N 66 LEU CA HA sing N N 67 LEU C O doub N N 68 LEU C OXT sing N N 69 LEU CB CG sing N N 70 LEU CB HB2 sing N N 71 LEU CB HB3 sing N N 72 LEU CG CD1 sing N N 73 LEU CG CD2 sing N N 74 LEU CG HG sing N N 75 LEU CD1 HD11 sing N N 76 LEU CD1 HD12 sing N N 77 LEU CD1 HD13 sing N N 78 LEU CD2 HD21 sing N N 79 LEU CD2 HD22 sing N N 80 LEU CD2 HD23 sing N N 81 LEU OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 MET N CA sing N N 107 MET N H sing N N 108 MET N H2 sing N N 109 MET CA C sing N N 110 MET CA CB sing N N 111 MET CA HA sing N N 112 MET C O doub N N 113 MET C OXT sing N N 114 MET CB CG sing N N 115 MET CB HB2 sing N N 116 MET CB HB3 sing N N 117 MET CG SD sing N N 118 MET CG HG2 sing N N 119 MET CG HG3 sing N N 120 MET SD CE sing N N 121 MET CE HE1 sing N N 122 MET CE HE2 sing N N 123 MET CE HE3 sing N N 124 MET OXT HXT sing N N 125 PHE N CA sing N N 126 PHE N H sing N N 127 PHE N H2 sing N N 128 PHE CA C sing N N 129 PHE CA CB sing N N 130 PHE CA HA sing N N 131 PHE C O doub N N 132 PHE C OXT sing N N 133 PHE CB CG sing N N 134 PHE CB HB2 sing N N 135 PHE CB HB3 sing N N 136 PHE CG CD1 doub Y N 137 PHE CG CD2 sing Y N 138 PHE CD1 CE1 sing Y N 139 PHE CD1 HD1 sing N N 140 PHE CD2 CE2 doub Y N 141 PHE CD2 HD2 sing N N 142 PHE CE1 CZ doub Y N 143 PHE CE1 HE1 sing N N 144 PHE CE2 CZ sing Y N 145 PHE CE2 HE2 sing N N 146 PHE CZ HZ sing N N 147 PHE OXT HXT sing N N 148 SER N CA sing N N 149 SER N H sing N N 150 SER N H2 sing N N 151 SER CA C sing N N 152 SER CA CB sing N N 153 SER CA HA sing N N 154 SER C O doub N N 155 SER C OXT sing N N 156 SER CB OG sing N N 157 SER CB HB2 sing N N 158 SER CB HB3 sing N N 159 SER OG HG sing N N 160 SER OXT HXT sing N N 161 THR N CA sing N N 162 THR N H sing N N 163 THR N H2 sing N N 164 THR CA C sing N N 165 THR CA CB sing N N 166 THR CA HA sing N N 167 THR C O doub N N 168 THR C OXT sing N N 169 THR CB OG1 sing N N 170 THR CB CG2 sing N N 171 THR CB HB sing N N 172 THR OG1 HG1 sing N N 173 THR CG2 HG21 sing N N 174 THR CG2 HG22 sing N N 175 THR CG2 HG23 sing N N 176 THR OXT HXT sing N N 177 TRP N CA sing N N 178 TRP N H sing N N 179 TRP N H2 sing N N 180 TRP CA C sing N N 181 TRP CA CB sing N N 182 TRP CA HA sing N N 183 TRP C O doub N N 184 TRP C OXT sing N N 185 TRP CB CG sing N N 186 TRP CB HB2 sing N N 187 TRP CB HB3 sing N N 188 TRP CG CD1 doub Y N 189 TRP CG CD2 sing Y N 190 TRP CD1 NE1 sing Y N 191 TRP CD1 HD1 sing N N 192 TRP CD2 CE2 doub Y N 193 TRP CD2 CE3 sing Y N 194 TRP NE1 CE2 sing Y N 195 TRP NE1 HE1 sing N N 196 TRP CE2 CZ2 sing Y N 197 TRP CE3 CZ3 doub Y N 198 TRP CE3 HE3 sing N N 199 TRP CZ2 CH2 doub Y N 200 TRP CZ2 HZ2 sing N N 201 TRP CZ3 CH2 sing Y N 202 TRP CZ3 HZ3 sing N N 203 TRP CH2 HH2 sing N N 204 TRP OXT HXT sing N N 205 TYR N CA sing N N 206 TYR N H sing N N 207 TYR N H2 sing N N 208 TYR CA C sing N N 209 TYR CA CB sing N N 210 TYR CA HA sing N N 211 TYR C O doub N N 212 TYR C OXT sing N N 213 TYR CB CG sing N N 214 TYR CB HB2 sing N N 215 TYR CB HB3 sing N N 216 TYR CG CD1 doub Y N 217 TYR CG CD2 sing Y N 218 TYR CD1 CE1 sing Y N 219 TYR CD1 HD1 sing N N 220 TYR CD2 CE2 doub Y N 221 TYR CD2 HD2 sing N N 222 TYR CE1 CZ doub Y N 223 TYR CE1 HE1 sing N N 224 TYR CE2 CZ sing Y N 225 TYR CE2 HE2 sing N N 226 TYR CZ OH sing N N 227 TYR OH HH sing N N 228 TYR OXT HXT sing N N 229 VAL N CA sing N N 230 VAL N H sing N N 231 VAL N H2 sing N N 232 VAL CA C sing N N 233 VAL CA CB sing N N 234 VAL CA HA sing N N 235 VAL C O doub N N 236 VAL C OXT sing N N 237 VAL CB CG1 sing N N 238 VAL CB CG2 sing N N 239 VAL CB HB sing N N 240 VAL CG1 HG11 sing N N 241 VAL CG1 HG12 sing N N 242 VAL CG1 HG13 sing N N 243 VAL CG2 HG21 sing N N 244 VAL CG2 HG22 sing N N 245 VAL CG2 HG23 sing N N 246 VAL OXT HXT sing N N 247 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1YTR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_