HEADER ANTIBIOTIC 11-FEB-05 1YTR TITLE NMR STRUCTURE OF PLANTARICIN A IN DPC MICELLES, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN PLANTARICIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THE PEPTIDE IS NATURALLY FOUND IN LACTOBACILLUS PLANTARUM. KEYWDS ANTIBIOTIC, PHEROMONE, AMPHIPATHIC HELIX, MICELLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.E.KRISTIANSEN,G.FIMLAND,D.MANTZILAS,J.NISSEN-MEYER REVDAT 4 02-MAR-22 1YTR 1 REMARK REVDAT 3 24-FEB-09 1YTR 1 VERSN REVDAT 2 21-JUN-05 1YTR 1 JRNL REVDAT 1 17-MAY-05 1YTR 0 JRNL AUTH P.E.KRISTIANSEN,G.FIMLAND,D.MANTZILAS,J.NISSEN-MEYER JRNL TITL STRUCTURE AND MODE OF ACTION OF THE MEMBRANE-PERMEABILIZING JRNL TITL 2 ANTIMICROBIAL PEPTIDE PHEROMONE PLANTARICIN A JRNL REF J.BIOL.CHEM. V. 280 22945 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15805109 JRNL DOI 10.1074/JBC.M501620200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.1 REMARK 3 AUTHORS : GUNTERT P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031915. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.9MM PLNA IN 100MM DPC, 10% REMARK 210 D2O, 90% H20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQCOSY; 1H-15N REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TALOS SIMULATED ANNEALING REMARK 210 ANNEALING REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.51 -141.32 REMARK 500 1 ALA A 4 122.49 62.06 REMARK 500 1 GLN A 8 -164.34 72.19 REMARK 500 1 MET A 9 -40.26 -175.38 REMARK 500 1 ALA A 11 -99.11 -167.91 REMARK 500 2 ALA A 4 136.92 179.92 REMARK 500 2 TYR A 5 56.60 -159.32 REMARK 500 2 SER A 6 -40.77 87.65 REMARK 500 2 LEU A 7 105.05 -53.11 REMARK 500 2 GLN A 8 -40.48 -170.98 REMARK 500 2 ALA A 11 -62.93 -165.04 REMARK 500 3 SER A 2 104.43 -178.74 REMARK 500 3 ALA A 4 89.60 -174.49 REMARK 500 3 TYR A 5 57.09 -106.94 REMARK 500 3 SER A 6 173.34 58.10 REMARK 500 3 GLN A 8 116.42 63.40 REMARK 500 3 ALA A 11 -70.98 -174.81 REMARK 500 4 SER A 2 117.61 68.43 REMARK 500 4 ALA A 4 171.46 -51.84 REMARK 500 4 SER A 6 -28.47 161.50 REMARK 500 4 LEU A 7 -62.34 -162.93 REMARK 500 4 GLN A 8 136.61 85.76 REMARK 500 4 ALA A 11 -53.72 -173.38 REMARK 500 5 SER A 2 80.84 40.91 REMARK 500 5 ALA A 4 -63.80 -157.21 REMARK 500 5 TYR A 5 81.68 39.06 REMARK 500 5 SER A 6 162.44 59.75 REMARK 500 5 MET A 9 -50.94 -163.46 REMARK 500 5 ALA A 11 -72.52 -174.08 REMARK 500 5 TRP A 24 -71.51 -72.00 REMARK 500 6 SER A 3 -63.01 69.39 REMARK 500 6 LEU A 7 -106.03 -57.81 REMARK 500 6 MET A 9 -46.38 -145.05 REMARK 500 6 ALA A 11 -75.89 166.93 REMARK 500 7 SER A 3 92.02 -160.33 REMARK 500 7 LEU A 7 -47.53 -139.15 REMARK 500 7 ALA A 11 -60.09 -157.42 REMARK 500 8 SER A 2 89.48 -163.63 REMARK 500 8 SER A 3 -68.45 68.30 REMARK 500 8 ALA A 4 -144.64 42.84 REMARK 500 8 SER A 6 153.01 64.61 REMARK 500 8 LEU A 7 -55.98 -126.45 REMARK 500 8 MET A 9 -37.09 179.96 REMARK 500 8 ALA A 11 -66.14 -172.85 REMARK 500 8 TRP A 24 -75.36 -70.63 REMARK 500 9 TYR A 5 54.60 -148.05 REMARK 500 9 GLN A 8 116.38 -166.44 REMARK 500 9 MET A 9 -55.94 -149.87 REMARK 500 9 ALA A 11 -78.68 -151.05 REMARK 500 10 SER A 2 -60.39 69.86 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1YTR A 1 26 UNP P80214 PLNA_LACPL 23 48 SEQRES 1 A 26 LYS SER SER ALA TYR SER LEU GLN MET GLY ALA THR ALA SEQRES 2 A 26 ILE LYS GLN VAL LYS LYS LEU PHE LYS LYS TRP GLY TRP HELIX 1 1 ALA A 11 LYS A 22 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1