HEADER TRANSCRIPTION/RNA 11-FEB-05 1YTY TITLE STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA TITLE 2 POL III TRANSCRIPTS BY LA AUTOANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*GP*CP*UP*GP*UP*UP*UP*U)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LUPUS LA PROTEIN; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: RESIDUES 1-194; COMPND 9 SYNONYM: SJOGREN SYNDROME TYPE B ANTIGEN, SS-B, LA RIBONUCLEOPROTEIN, COMPND 10 LA AUTOANTIGEN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: SSB; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28B KEYWDS PROTEIN-RNA COMPLEX, TRANSCRIPTION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV,D.J.PATEL REVDAT 4 20-NOV-24 1YTY 1 SEQADV LINK REVDAT 3 13-JUL-11 1YTY 1 VERSN REVDAT 2 24-FEB-09 1YTY 1 VERSN REVDAT 1 17-JAN-06 1YTY 0 JRNL AUTH M.TEPLOVA,Y.R.YUAN,A.T.PHAN,L.MALININA,S.ILIN,A.TEPLOV, JRNL AUTH 2 D.J.PATEL JRNL TITL STRUCTURAL BASIS FOR RECOGNITION AND SEQUESTRATION OF JRNL TITL 2 UUU(OH) 3' TEMINI OF NASCENT RNA POLYMERASE III TRANSCRIPTS JRNL TITL 3 BY LA, A RHEUMATIC DISEASE AUTOANTIGEN. JRNL REF MOL.CELL V. 21 75 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16387655 JRNL DOI 10.1016/J.MOLCEL.2005.10.027 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3038 REMARK 3 NUCLEIC ACID ATOMS : 366 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3502 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4787 ; 1.726 ; 2.109 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 7.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;35.972 ;24.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 617 ;15.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2462 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1361 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2337 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2986 ; 1.471 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1898 ; 2.328 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1801 ; 3.571 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 189 4 REMARK 3 1 B 7 B 189 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1515 ; 0.37 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1515 ; 0.94 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 188 REMARK 3 RESIDUE RANGE : B 7 B 188 REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9977 -2.3111 -42.4449 REMARK 3 T TENSOR REMARK 3 T11: -0.0332 T22: -0.0971 REMARK 3 T33: -0.1334 T12: -0.0188 REMARK 3 T13: -0.0015 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.1668 L22: 0.8005 REMARK 3 L33: 0.3996 L12: -0.6687 REMARK 3 L13: 0.0428 L23: -0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0661 S13: -0.0691 REMARK 3 S21: -0.0513 S22: 0.0076 S23: 0.0295 REMARK 3 S31: 0.0110 S32: 0.0043 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000031918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : 0.14800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LITHIUM SULFATE, POTASSIUM REMARK 280 CHLORIDE, ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 76.84500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.00050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.00050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER. THERE ARE TWO COPIES AT ONE ASYMMETRIC UNIT REMARK 300 RELATED BY NCS 2-FOLD AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 190 REMARK 465 LYS A 191 REMARK 465 LYS A 192 REMARK 465 ASN A 193 REMARK 465 GLU A 194 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 ALA B 190 REMARK 465 LYS B 191 REMARK 465 LYS B 192 REMARK 465 ASN B 193 REMARK 465 GLU B 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U C 1 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 U C 1 N1 - C2 - O2 ANGL. DEV. = 4.7 DEGREES REMARK 500 G C 2 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 G C 2 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 U C 7 O5' - C5' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 U C 7 N1 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 U C 7 O4' - C1' - N1 ANGL. DEV. = -6.1 DEGREES REMARK 500 U C 7 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 U D 6 C5' - C4' - O4' ANGL. DEV. = -8.8 DEGREES REMARK 500 U D 6 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 U D 7 O4' - C1' - N1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 95 79.06 -110.55 REMARK 500 LYS A 148 11.86 86.70 REMARK 500 PRO A 171 -91.92 -46.79 REMARK 500 LYS A 176 -107.68 47.38 REMARK 500 ASP B 43 49.24 -152.98 REMARK 500 LYS B 176 -110.74 53.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 172 GLN B 173 -141.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YTY A 1 194 UNP P05455 LA_HUMAN 1 194 DBREF 1YTY B 1 194 UNP P05455 LA_HUMAN 1 194 DBREF 1YTY C 1 9 PDB 1YTY 1YTY 1 9 DBREF 1YTY D 1 9 PDB 1YTY 1YTY 1 9 SEQADV 1YTY MSE A 1 UNP P05455 MET 1 MODIFIED RESIDUE SEQADV 1YTY MSE A 10 UNP P05455 MET 10 MODIFIED RESIDUE SEQADV 1YTY MSE A 52 UNP P05455 MET 52 MODIFIED RESIDUE SEQADV 1YTY MSE A 80 UNP P05455 MET 80 MODIFIED RESIDUE SEQADV 1YTY MSE A 142 UNP P05455 MET 142 MODIFIED RESIDUE SEQADV 1YTY MSE B 1 UNP P05455 MET 1 MODIFIED RESIDUE SEQADV 1YTY MSE B 10 UNP P05455 MET 10 MODIFIED RESIDUE SEQADV 1YTY MSE B 52 UNP P05455 MET 52 MODIFIED RESIDUE SEQADV 1YTY MSE B 80 UNP P05455 MET 80 MODIFIED RESIDUE SEQADV 1YTY MSE B 142 UNP P05455 MET 142 MODIFIED RESIDUE SEQRES 1 C 9 U G C U G U U U U SEQRES 1 D 9 U G C U G U U U U SEQRES 1 A 194 MSE ALA GLU ASN GLY ASP ASN GLU LYS MSE ALA ALA LEU SEQRES 2 A 194 GLU ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE GLY SEQRES 3 A 194 ASP PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU GLN SEQRES 4 A 194 ILE LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE MSE SEQRES 5 A 194 ILE LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP PHE SEQRES 6 A 194 ASN VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA GLU SEQRES 7 A 194 LEU MSE GLU ILE SER GLU ASP LYS THR LYS ILE ARG ARG SEQRES 8 A 194 SER PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU TYR SEQRES 9 A 194 LYS ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS GLY SEQRES 10 A 194 PHE PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU TRP SEQRES 11 A 194 LEU GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MSE ARG SEQRES 12 A 194 ARG THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE VAL SEQRES 13 A 194 VAL PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL GLU SEQRES 14 A 194 THR PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU ILE SEQRES 15 A 194 LEU PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU SEQRES 1 B 194 MSE ALA GLU ASN GLY ASP ASN GLU LYS MSE ALA ALA LEU SEQRES 2 B 194 GLU ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE GLY SEQRES 3 B 194 ASP PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU GLN SEQRES 4 B 194 ILE LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE MSE SEQRES 5 B 194 ILE LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP PHE SEQRES 6 B 194 ASN VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA GLU SEQRES 7 B 194 LEU MSE GLU ILE SER GLU ASP LYS THR LYS ILE ARG ARG SEQRES 8 B 194 SER PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU TYR SEQRES 9 B 194 LYS ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS GLY SEQRES 10 B 194 PHE PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU TRP SEQRES 11 B 194 LEU GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MSE ARG SEQRES 12 B 194 ARG THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE VAL SEQRES 13 B 194 VAL PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL GLU SEQRES 14 B 194 THR PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU ILE SEQRES 15 B 194 LEU PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU MODRES 1YTY MSE A 10 MET SELENOMETHIONINE MODRES 1YTY MSE A 52 MET SELENOMETHIONINE MODRES 1YTY MSE A 80 MET SELENOMETHIONINE MODRES 1YTY MSE A 142 MET SELENOMETHIONINE MODRES 1YTY MSE B 10 MET SELENOMETHIONINE MODRES 1YTY MSE B 52 MET SELENOMETHIONINE MODRES 1YTY MSE B 80 MET SELENOMETHIONINE MODRES 1YTY MSE B 142 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 52 8 HET MSE A 80 8 HET MSE A 142 8 HET MSE B 10 8 HET MSE B 52 8 HET MSE B 80 8 HET MSE B 142 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *129(H2 O) HELIX 1 1 ASP A 6 PHE A 25 1 20 HELIX 2 2 ASN A 29 ARG A 32 5 4 HELIX 3 3 ASP A 33 ASP A 43 1 11 HELIX 4 4 LEU A 49 ILE A 53 1 5 HELIX 5 5 PHE A 55 THR A 62 1 8 HELIX 6 6 ASP A 64 LYS A 74 1 11 HELIX 7 7 THR A 101 ARG A 111 1 11 HELIX 8 8 THR A 123 GLU A 132 1 10 HELIX 9 9 ASP A 133 GLY A 135 5 3 HELIX 10 10 SER A 160 THR A 170 1 11 HELIX 11 11 ASP A 186 TYR A 188 5 3 HELIX 12 12 ASN B 7 PHE B 25 1 19 HELIX 13 13 ASN B 29 ARG B 32 5 4 HELIX 14 14 ASP B 33 LEU B 42 1 10 HELIX 15 15 LEU B 49 ILE B 53 1 5 HELIX 16 16 PHE B 55 THR B 62 1 8 HELIX 17 17 ASP B 64 LYS B 74 1 11 HELIX 18 18 THR B 101 ASN B 110 1 10 HELIX 19 19 THR B 123 LEU B 131 1 9 HELIX 20 20 GLU B 132 LYS B 134 5 3 HELIX 21 21 SER B 160 THR B 170 1 11 HELIX 22 22 ASP B 186 TYR B 188 5 3 SHEET 1 A 3 VAL A 47 PRO A 48 0 SHEET 2 A 3 LYS A 88 ARG A 91 -1 O ILE A 89 N VAL A 47 SHEET 3 A 3 MSE A 80 ILE A 82 -1 N GLU A 81 O ARG A 90 SHEET 1 B 4 VAL A 137 ARG A 144 0 SHEET 2 B 4 PHE A 150 PHE A 158 -1 O VAL A 157 N LEU A 138 SHEET 3 B 4 SER A 112 LYS A 116 -1 N VAL A 113 O VAL A 156 SHEET 4 B 4 LEU A 181 PHE A 184 -1 O LEU A 183 N TYR A 114 SHEET 1 C 2 LYS A 174 TYR A 175 0 SHEET 2 C 2 THR A 178 ASP A 179 -1 O THR A 178 N TYR A 175 SHEET 1 D 3 VAL B 47 PRO B 48 0 SHEET 2 D 3 LYS B 88 ARG B 91 -1 O ILE B 89 N VAL B 47 SHEET 3 D 3 MSE B 80 ILE B 82 -1 N GLU B 81 O ARG B 90 SHEET 1 E 4 VAL B 137 ARG B 144 0 SHEET 2 E 4 PHE B 150 PHE B 158 -1 O VAL B 157 N LEU B 138 SHEET 3 E 4 SER B 112 LYS B 116 -1 N VAL B 113 O VAL B 156 SHEET 4 E 4 LEU B 181 PHE B 184 -1 O LEU B 183 N TYR B 114 SHEET 1 F 2 LYS B 174 TYR B 175 0 SHEET 2 F 2 THR B 178 ASP B 179 -1 O THR B 178 N TYR B 175 LINK C LYS A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N ALA A 11 1555 1555 1.33 LINK C ILE A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N ILE A 53 1555 1555 1.32 LINK C LEU A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLU A 81 1555 1555 1.33 LINK C GLN A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N ARG A 143 1555 1555 1.32 LINK C LYS B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N ALA B 11 1555 1555 1.34 LINK C ILE B 51 N MSE B 52 1555 1555 1.32 LINK C MSE B 52 N ILE B 53 1555 1555 1.34 LINK C LEU B 79 N MSE B 80 1555 1555 1.35 LINK C MSE B 80 N GLU B 81 1555 1555 1.33 LINK C GLN B 141 N MSE B 142 1555 1555 1.32 LINK C MSE B 142 N ARG B 143 1555 1555 1.32 CRYST1 153.690 54.001 56.684 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017642 0.00000