HEADER VIRAL PROTEIN 11-FEB-05 1YU2 TITLE MAJOR TROPISM DETERMINANT M1 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR TROPISM DETERMINANT (MTD-M1); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PHAGE BMP-1; SOURCE 3 ORGANISM_TAXID: 263374; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS C-TYPE LECTIN, BETA SANDWICH, BETA PRISM, VARIABILITY, DIVERSITY- KEYWDS 2 GENERATING RETROELEMENT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MCMAHON,J.L.MILLER,J.A.LAWTON,P.GHOSH REVDAT 5 23-AUG-23 1YU2 1 REMARK LINK REVDAT 4 13-JUL-11 1YU2 1 VERSN REVDAT 3 24-FEB-09 1YU2 1 VERSN REVDAT 2 18-OCT-05 1YU2 1 JRNL REVDAT 1 20-SEP-05 1YU2 0 JRNL AUTH S.A.MCMAHON,J.L.MILLER,J.A.LAWTON,D.E.KERKOW,A.HODES, JRNL AUTH 2 M.A.MARTI-RENOM,S.DOULATOV,E.NARAYANAN,A.SALI,J.F.MILLER, JRNL AUTH 3 P.GHOSH JRNL TITL THE C-TYPE LECTIN FOLD AS AN EVOLUTIONARY SOLUTION FOR JRNL TITL 2 MASSIVE SEQUENCE VARIATION JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 886 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 16170324 JRNL DOI 10.1038/NSMB992 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2840 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2419 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3875 ; 0.986 ; 1.903 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5604 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3315 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 520 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2797 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1562 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 126 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 0.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2932 ; 0.608 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 991 ; 0.856 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 943 ; 1.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5479 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1YU0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, SODIUM CITRATE, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.57300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.57300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.57300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM: -Y, X-Y, REMARK 300 Z AND -X+Y, -X, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.53400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.76700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 81.00282 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -37.65 -140.70 REMARK 500 ALA A 152 -121.04 -144.81 REMARK 500 ASN A 157 -168.24 -108.64 REMARK 500 PHE A 172 88.63 -160.35 REMARK 500 ASN A 199 42.26 -91.64 REMARK 500 ALA A 217 78.93 -101.40 REMARK 500 ASN A 311 33.25 -98.13 REMARK 500 THR A 348 -118.20 34.44 REMARK 500 SER A 365 65.89 -151.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 313 O REMARK 620 2 PHE A 313 O 97.5 REMARK 620 3 PHE A 313 O 97.5 97.5 REMARK 620 4 HOH A 485 O 93.3 99.0 158.9 REMARK 620 5 HOH A 485 O 158.9 93.2 99.0 67.1 REMARK 620 6 HOH A 485 O 99.0 158.9 93.2 67.1 67.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YU0 RELATED DB: PDB REMARK 900 RELATED ID: 1YU1 RELATED DB: PDB REMARK 900 RELATED ID: 1YU3 RELATED DB: PDB REMARK 900 RELATED ID: 1YU4 RELATED DB: PDB DBREF 1YU2 A 1 381 UNP Q775D6 Q775D6_9CAUD 1 381 SEQRES 1 A 381 MET SER THR ALA VAL GLN PHE ARG GLY GLY THR THR ALA SEQRES 2 A 381 GLN HIS ALA THR PHE THR GLY ALA ALA ARG GLU ILE THR SEQRES 3 A 381 VAL ASP THR ASP LYS ASN THR VAL VAL VAL HIS ASP GLY SEQRES 4 A 381 ALA THR ALA GLY GLY PHE PRO LEU ALA ARG HIS ASP LEU SEQRES 5 A 381 VAL LYS THR ALA PHE ILE LYS ALA ASP LYS SER ALA VAL SEQRES 6 A 381 ALA PHE THR ARG THR GLY ASN ALA THR ALA SER ILE LYS SEQRES 7 A 381 ALA GLY THR ILE VAL GLU VAL ASN GLY LYS LEU VAL GLN SEQRES 8 A 381 PHE THR ALA ASP THR ALA ILE THR MET PRO ALA LEU THR SEQRES 9 A 381 ALA GLY THR ASP TYR ALA ILE TYR VAL CYS ASP ASP GLY SEQRES 10 A 381 THR VAL ARG ALA ASP SER ASN PHE SER ALA PRO THR GLY SEQRES 11 A 381 TYR THR SER THR THR ALA ARG LYS VAL GLY GLY PHE HIS SEQRES 12 A 381 TYR ALA PRO GLY SER ASN ALA ALA ALA GLN ALA GLY GLY SEQRES 13 A 381 ASN THR THR ALA GLN ILE ASN GLU TYR SER LEU TRP ASP SEQRES 14 A 381 ILE LYS PHE ARG PRO ALA ALA LEU ASP PRO ARG GLY MET SEQRES 15 A 381 THR LEU VAL ALA GLY ALA PHE TRP ALA ASP ILE TYR LEU SEQRES 16 A 381 LEU GLY VAL ASN HIS LEU THR ASP GLY THR SER LYS TYR SEQRES 17 A 381 ASN VAL THR ILE ALA ASP GLY SER ALA SER PRO LYS LYS SEQRES 18 A 381 SER THR LYS PHE GLY GLY ASP GLY SER ALA ALA TYR SER SEQRES 19 A 381 ASP GLY ALA TRP TYR ASN PHE ALA GLU VAL MET THR HIS SEQRES 20 A 381 HIS GLY LYS ARG LEU PRO ASN TYR ASN GLU PHE GLN ALA SEQRES 21 A 381 LEU ALA PHE GLY THR THR GLU ALA THR SER SER GLY GLY SEQRES 22 A 381 THR ASP VAL PRO THR THR GLY VAL ASN GLY THR GLY ALA SEQRES 23 A 381 THR SER ALA TRP ASN ILE PHE THR SER LYS TRP GLY VAL SEQRES 24 A 381 VAL GLN ALA SER GLY CYS LEU TRP THR TRP GLY ASN GLU SEQRES 25 A 381 PHE GLY GLY VAL ASN GLY ALA SER GLU TYR THR ALA ASN SEQRES 26 A 381 THR GLY GLY ARG GLY SER VAL TYR ALA GLN PRO ALA ALA SEQRES 27 A 381 ALA LEU PHE GLY GLY SER TRP HIS TYR THR SER ASN SER SEQRES 28 A 381 GLY SER ARG ALA ALA TYR TRP TYR SER GLY PRO SER ASN SEQRES 29 A 381 SER PRO ALA ASN ILE GLY ALA ARG GLY VAL CYS ASP HIS SEQRES 30 A 381 LEU ILE LEU GLU HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *352(H2 O) HELIX 1 1 THR A 11 THR A 17 1 7 HELIX 2 2 ARG A 49 LYS A 54 5 6 HELIX 3 3 GLU A 164 LEU A 167 5 4 HELIX 4 4 ASN A 199 GLY A 204 1 6 HELIX 5 5 ALA A 237 HIS A 248 1 12 HELIX 6 6 ASN A 254 PHE A 263 1 10 HELIX 7 7 ALA A 289 THR A 294 5 6 HELIX 8 8 TYR A 347 SER A 351 5 5 SHEET 1 A 4 GLY A 9 GLY A 10 0 SHEET 2 A 4 ILE A 25 ASP A 28 1 O VAL A 27 N GLY A 10 SHEET 3 A 4 THR A 33 VAL A 36 -1 O VAL A 35 N THR A 26 SHEET 4 A 4 PHE A 45 PRO A 46 -1 O PHE A 45 N VAL A 36 SHEET 1 B 3 PHE A 57 ILE A 58 0 SHEET 2 B 3 THR A 81 VAL A 85 -1 O ILE A 82 N ILE A 58 SHEET 3 B 3 LYS A 88 PHE A 92 -1 O VAL A 90 N VAL A 83 SHEET 1 C 3 PHE A 67 GLY A 71 0 SHEET 2 C 3 THR A 74 ILE A 77 -1 O SER A 76 N THR A 68 SHEET 3 C 3 THR A 96 ALA A 97 -1 O THR A 96 N ILE A 77 SHEET 1 D 4 VAL A 119 ASP A 122 0 SHEET 2 D 4 THR A 107 CYS A 114 -1 N TYR A 112 O ARG A 120 SHEET 3 D 4 ALA A 136 ALA A 145 -1 O TYR A 144 N THR A 107 SHEET 4 D 4 GLN A 161 ILE A 162 -1 O GLN A 161 N ALA A 145 SHEET 1 E 4 VAL A 119 ASP A 122 0 SHEET 2 E 4 THR A 107 CYS A 114 -1 N TYR A 112 O ARG A 120 SHEET 3 E 4 ALA A 136 ALA A 145 -1 O TYR A 144 N THR A 107 SHEET 4 E 4 TRP A 168 ASP A 169 -1 O TRP A 168 N GLY A 141 SHEET 1 F 4 PHE A 172 PRO A 174 0 SHEET 2 F 4 VAL A 374 ILE A 379 -1 O LEU A 378 N ARG A 173 SHEET 3 F 4 PHE A 189 ASP A 192 -1 N TRP A 190 O CYS A 375 SHEET 4 F 4 MET A 182 VAL A 185 -1 N VAL A 185 O PHE A 189 SHEET 1 G 4 ALA A 356 TYR A 357 0 SHEET 2 G 4 PRO A 336 PHE A 341 -1 N LEU A 340 O TYR A 357 SHEET 3 G 4 TRP A 307 ASN A 317 -1 N GLY A 310 O ALA A 339 SHEET 4 G 4 ILE A 369 GLY A 370 1 O GLY A 370 N TRP A 307 LINK O PHE A 313 MG MG A 401 1555 1555 2.28 LINK O PHE A 313 MG MG A 401 2655 1555 2.28 LINK O PHE A 313 MG MG A 401 3665 1555 2.28 LINK MG MG A 401 O HOH A 485 1555 1555 2.47 LINK MG MG A 401 O HOH A 485 1555 2655 2.47 LINK MG MG A 401 O HOH A 485 1555 3665 2.47 SITE 1 AC1 2 PHE A 313 HOH A 485 CRYST1 93.534 93.534 103.146 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010691 0.006173 0.000000 0.00000 SCALE2 0.000000 0.012345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009695 0.00000