data_1YUI # _entry.id 1YUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YUI pdb_00001yui 10.2210/pdb1yui/pdb WWPDB D_1000177448 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YUI _pdbx_database_status.recvd_initial_deposition_date 1996-12-31 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YUJ _pdbx_database_related.details 'ENSEMBLE OF 50 STRUCTURES' _pdbx_database_related.content_type ensemble # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Omichinski, J.G.' 2 'Gronenborn, A.M.' 3 # _citation.id primary _citation.title 'The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 122 _citation.page_last 132 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9033593 _citation.pdbx_database_id_DOI 10.1038/nsb0297-122 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Omichinski, J.G.' 1 ? primary 'Pedone, P.V.' 2 ? primary 'Felsenfeld, G.' 3 ? primary 'Gronenborn, A.M.' 4 ? primary 'Clore, G.M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*GP*AP*GP*AP*GP*TP*AP*C)-3') ; 3383.224 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*TP*CP*TP*CP*GP*GP*C)-3') ; 3325.172 1 ? ? ? ? 3 polymer nat GAGA-FACTOR 6202.233 1 ? ? 'DNA BINDING DOMAIN, RESIDUES 310 - 372' ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DG)(DA)(DG)(DA)(DG)(DT)(DA)(DC)' GCCGAGAGTAC B ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DT)(DC)(DT)(DC)(DG)(DG)(DC)' GTACTCTCGGC C ? 3 'polypeptide(L)' no no PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV A ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DT n 1 10 DA n 1 11 DC n 2 1 DG n 2 2 DT n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DG n 2 11 DC n 3 1 PRO n 3 2 LYS n 3 3 ALA n 3 4 LYS n 3 5 ARG n 3 6 ALA n 3 7 LYS n 3 8 HIS n 3 9 PRO n 3 10 PRO n 3 11 GLY n 3 12 THR n 3 13 GLU n 3 14 LYS n 3 15 PRO n 3 16 ARG n 3 17 SER n 3 18 ARG n 3 19 SER n 3 20 GLN n 3 21 SER n 3 22 GLU n 3 23 GLN n 3 24 PRO n 3 25 ALA n 3 26 THR n 3 27 CYS n 3 28 PRO n 3 29 ILE n 3 30 CYS n 3 31 TYR n 3 32 ALA n 3 33 VAL n 3 34 ILE n 3 35 ARG n 3 36 GLN n 3 37 SER n 3 38 ARG n 3 39 ASN n 3 40 LEU n 3 41 ARG n 3 42 ARG n 3 43 HIS n 3 44 LEU n 3 45 GLU n 3 46 LEU n 3 47 ARG n 3 48 HIS n 3 49 PHE n 3 50 ALA n 3 51 LYS n 3 52 PRO n 3 53 GLY n 3 54 VAL n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'fruit fly' _entity_src_nat.pdbx_organism_scientific 'Drosophila melanogaster' _entity_src_nat.pdbx_ncbi_taxonomy_id 7227 _entity_src_nat.genus Drosophila _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G B . n A 1 2 DC 2 102 102 DC C B . n A 1 3 DC 3 103 103 DC C B . n A 1 4 DG 4 104 104 DG G B . n A 1 5 DA 5 105 105 DA A B . n A 1 6 DG 6 106 106 DG G B . n A 1 7 DA 7 107 107 DA A B . n A 1 8 DG 8 108 108 DG G B . n A 1 9 DT 9 109 109 DT T B . n A 1 10 DA 10 110 110 DA A B . n A 1 11 DC 11 111 111 DC C B . n B 2 1 DG 1 112 112 DG G C . n B 2 2 DT 2 113 113 DT T C . n B 2 3 DA 3 114 114 DA A C . n B 2 4 DC 4 115 115 DC C C . n B 2 5 DT 5 116 116 DT T C . n B 2 6 DC 6 117 117 DC C C . n B 2 7 DT 7 118 118 DT T C . n B 2 8 DC 8 119 119 DC C C . n B 2 9 DG 9 120 120 DG G C . n B 2 10 DG 10 121 121 DG G C . n B 2 11 DC 11 122 122 DC C C . n C 3 1 PRO 1 10 10 PRO PRO A . n C 3 2 LYS 2 11 11 LYS LYS A . n C 3 3 ALA 3 12 12 ALA ALA A . n C 3 4 LYS 4 13 13 LYS LYS A . n C 3 5 ARG 5 14 14 ARG ARG A . n C 3 6 ALA 6 15 15 ALA ALA A . n C 3 7 LYS 7 16 16 LYS LYS A . n C 3 8 HIS 8 17 17 HIS HIS A . n C 3 9 PRO 9 18 18 PRO PRO A . n C 3 10 PRO 10 19 19 PRO PRO A . n C 3 11 GLY 11 20 20 GLY GLY A . n C 3 12 THR 12 21 21 THR THR A . n C 3 13 GLU 13 22 22 GLU GLU A . n C 3 14 LYS 14 23 23 LYS LYS A . n C 3 15 PRO 15 24 24 PRO PRO A . n C 3 16 ARG 16 25 25 ARG ARG A . n C 3 17 SER 17 26 26 SER SER A . n C 3 18 ARG 18 27 27 ARG ARG A . n C 3 19 SER 19 28 28 SER SER A . n C 3 20 GLN 20 29 29 GLN GLN A . n C 3 21 SER 21 30 30 SER SER A . n C 3 22 GLU 22 31 31 GLU GLU A . n C 3 23 GLN 23 32 32 GLN GLN A . n C 3 24 PRO 24 33 33 PRO PRO A . n C 3 25 ALA 25 34 34 ALA ALA A . n C 3 26 THR 26 35 35 THR THR A . n C 3 27 CYS 27 36 36 CYS CYS A . n C 3 28 PRO 28 37 37 PRO PRO A . n C 3 29 ILE 29 38 38 ILE ILE A . n C 3 30 CYS 30 39 39 CYS CYS A . n C 3 31 TYR 31 40 40 TYR TYR A . n C 3 32 ALA 32 41 41 ALA ALA A . n C 3 33 VAL 33 42 42 VAL VAL A . n C 3 34 ILE 34 43 43 ILE ILE A . n C 3 35 ARG 35 44 44 ARG ARG A . n C 3 36 GLN 36 45 45 GLN GLN A . n C 3 37 SER 37 46 46 SER SER A . n C 3 38 ARG 38 47 47 ARG ARG A . n C 3 39 ASN 39 48 48 ASN ASN A . n C 3 40 LEU 40 49 49 LEU LEU A . n C 3 41 ARG 41 50 50 ARG ARG A . n C 3 42 ARG 42 51 51 ARG ARG A . n C 3 43 HIS 43 52 52 HIS HIS A . n C 3 44 LEU 44 53 53 LEU LEU A . n C 3 45 GLU 45 54 54 GLU GLU A . n C 3 46 LEU 46 55 55 LEU LEU A . n C 3 47 ARG 47 56 56 ARG ARG A . n C 3 48 HIS 48 57 57 HIS HIS A . n C 3 49 PHE 49 58 58 PHE PHE A . n C 3 50 ALA 50 59 59 ALA ALA A . n C 3 51 LYS 51 60 60 LYS LYS A . n C 3 52 PRO 52 61 61 PRO PRO A . n C 3 53 GLY 53 62 62 GLY GLY A . n C 3 54 VAL 54 63 63 VAL VAL A . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 64 _pdbx_nonpoly_scheme.auth_seq_num 64 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1YUI _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YUI _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1YUI _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1YUI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YUI _struct.title 'SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, REGULARIZED MEAN STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YUI _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'COMPLEX (DNA-BINDING PROTEIN-DNA), CHROMATIN REMODELING, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP GAGA_DROME Q08605 3 319 ? ? 2 PDB 1YUI 1YUI 1 ? ? ? 3 PDB 1YUI 1YUI 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YUI A 1 ? 54 ? Q08605 319 ? 372 ? 10 63 2 2 1YUI B 1 ? 11 ? 1YUI 101 ? 111 ? 101 111 3 3 1YUI C 1 ? 11 ? 1YUI 112 ? 122 ? 112 122 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG C 16 ? SER C 19 ? ARG A 25 SER A 28 1 ? 4 HELX_P HELX_P2 2 SER C 37 ? ARG C 47 ? SER A 46 ARG A 56 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 27 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 36 A ZN 64 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? C CYS 30 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 39 A ZN 64 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc3 metalc ? ? C HIS 43 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 52 A ZN 64 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc4 metalc ? ? C HIS 48 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 57 A ZN 64 1_555 ? ? ? ? ? ? ? 2.012 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 105 C DT 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 105 C DT 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 107 C DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 107 C DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 109 C DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 109 C DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 110 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 110 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 SG ? C CYS 30 ? A CYS 39 ? 1_555 107.3 ? 2 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 106.2 ? 3 SG ? C CYS 30 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 107.5 ? 4 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 107.3 ? 5 SG ? C CYS 30 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 121.4 ? 6 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 106.3 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA C 25 ? THR C 26 ? ALA A 34 THR A 35 A 2 VAL C 33 ? ILE C 34 ? VAL A 42 ILE A 43 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 25 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 34 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 34 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 43 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 64 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 64' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 27 ? CYS A 36 . ? 1_555 ? 2 AC1 4 CYS C 30 ? CYS A 39 . ? 1_555 ? 3 AC1 4 HIS C 43 ? HIS A 52 . ? 1_555 ? 4 AC1 4 HIS C 48 ? HIS A 57 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 101 ? ? "C1'" B DG 101 ? ? N9 B DG 101 ? ? 110.39 108.30 2.09 0.30 N 2 1 "O4'" B DC 102 ? ? "C1'" B DC 102 ? ? N1 B DC 102 ? ? 110.41 108.30 2.11 0.30 N 3 1 "O4'" B DC 103 ? ? "C1'" B DC 103 ? ? N1 B DC 103 ? ? 110.58 108.30 2.28 0.30 N 4 1 "O4'" B DG 104 ? ? "C1'" B DG 104 ? ? N9 B DG 104 ? ? 110.75 108.30 2.45 0.30 N 5 1 "O4'" B DA 105 ? ? "C1'" B DA 105 ? ? N9 B DA 105 ? ? 111.42 108.30 3.12 0.30 N 6 1 "O4'" B DG 106 ? ? "C1'" B DG 106 ? ? N9 B DG 106 ? ? 110.64 108.30 2.34 0.30 N 7 1 "O4'" B DA 107 ? ? "C1'" B DA 107 ? ? N9 B DA 107 ? ? 110.61 108.30 2.31 0.30 N 8 1 "O4'" B DG 108 ? ? "C1'" B DG 108 ? ? N9 B DG 108 ? ? 111.43 108.30 3.13 0.30 N 9 1 "O4'" B DT 109 ? ? "C1'" B DT 109 ? ? N1 B DT 109 ? ? 110.37 108.30 2.07 0.30 N 10 1 "O4'" B DA 110 ? ? "C1'" B DA 110 ? ? N9 B DA 110 ? ? 110.47 108.30 2.17 0.30 N 11 1 "O4'" B DC 111 ? ? "C1'" B DC 111 ? ? N1 B DC 111 ? ? 110.90 108.30 2.60 0.30 N 12 1 "O4'" C DG 112 ? ? "C1'" C DG 112 ? ? N9 C DG 112 ? ? 110.83 108.30 2.53 0.30 N 13 1 "O4'" C DT 113 ? ? "C1'" C DT 113 ? ? N1 C DT 113 ? ? 110.51 108.30 2.21 0.30 N 14 1 C6 C DT 113 ? ? C5 C DT 113 ? ? C7 C DT 113 ? ? 119.18 122.90 -3.72 0.60 N 15 1 "O4'" C DA 114 ? ? "C1'" C DA 114 ? ? N9 C DA 114 ? ? 110.90 108.30 2.60 0.30 N 16 1 "O4'" C DC 115 ? ? "C1'" C DC 115 ? ? N1 C DC 115 ? ? 110.14 108.30 1.84 0.30 N 17 1 "O4'" C DT 116 ? ? "C1'" C DT 116 ? ? N1 C DT 116 ? ? 110.20 108.30 1.90 0.30 N 18 1 "O4'" C DC 117 ? ? "C1'" C DC 117 ? ? N1 C DC 117 ? ? 111.42 108.30 3.12 0.30 N 19 1 "O4'" C DT 118 ? ? "C1'" C DT 118 ? ? N1 C DT 118 ? ? 111.58 108.30 3.28 0.30 N 20 1 "O4'" C DC 119 ? ? "C1'" C DC 119 ? ? N1 C DC 119 ? ? 110.75 108.30 2.45 0.30 N 21 1 "O4'" C DG 120 ? ? "C1'" C DG 120 ? ? N9 C DG 120 ? ? 110.98 108.30 2.68 0.30 N 22 1 "O4'" C DG 121 ? ? "C1'" C DG 121 ? ? N9 C DG 121 ? ? 110.58 108.30 2.28 0.30 N 23 1 "O4'" C DC 122 ? ? "C1'" C DC 122 ? ? N1 C DC 122 ? ? 110.29 108.30 1.99 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 12 ? ? -159.26 76.32 2 1 LYS A 23 ? ? -104.38 76.45 3 1 PRO A 33 ? ? -37.70 152.93 4 1 TYR A 40 ? ? 52.98 17.58 5 1 HIS A 57 ? ? -152.68 -73.20 # _pdbx_nmr_ensemble.entry_id 1YUI _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'REGULARIZED MEAN STRUCTURE' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303.50 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.00 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type 'TRIPLE RESONANCE' _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_details.entry_id 1YUI _pdbx_nmr_details.text ;TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN 12C- FILTERED NOE, 12C-FILTERED HOHAHA AND 1H-1H NOE FOR DNA. QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS 3D 15N- SEPARATED, 3D 13C-SEPARATED, 3D 12C-FILTERED 3D 13C- SEPARATED/12C-FILTERED, AND 2D 1H-1H NOE EXPERIMENTS. ; # _pdbx_nmr_refine.entry_id 1YUI _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE 3D STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX WAS SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR AND IS BASED ON 1475 EXPERIMENTAL NMR RESTRAINTS: (A) INTRAPROTEIN: 188 SEQUENTIAL (|I- J|=1), 134 MEDIUM RANGE (1 < |I-J| <=5) AND 95 LONG RANGE (|I-J| >5) INTERRESIDUES AND 275 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 140 TORSION ANGLE RESTRAINTS; 33 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; AND 94 (48 CALPHA AND 46 CBETA) 13C SHIFT RESTRAINTS. (NUMBERS OF RESIDUES 10 - 61) (B) INTRA-DNA: 124 INTRARESIDUE, 112 SEQUENTIAL INTRASTRAND, 21 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 102 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, DELTA, EPSILON AND AND ZETA BACKBONE TORSION ANGLES). (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS. THE EXPERIMENTAL NMR RESTRAINTS ARE SUPPLEMENTED BY HYDROGEN BONDING RESTRAINTS: 24 DISTANCES FOR 12 BACKBONE HYDROGEN BONDS WITHIN THE PROTEIN, 58 DISTANCES FOR WATSON-CRICK BASE-PAIRING WITHIN THE DNA, AND 10 AMBIGUOUS DISTANCE RESTRAINTS BETWEEN THE PROTEIN AND THE DNA. THE RESTRAINTS HAVE BEEN DEPOSITED. THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. MAGN. RESON. SERIES B 104, 99-103) AND CARBON CHEMICAL SHIFT (KUSZEWSKI ET AL. (1995) J. MAGN. RESON. SERIES B 106, 92-96) RESTRAINTS, AND A CONFORMATIONAL DATABASE POTENTIAL (KUSZEWSKI ET AL.(1996) PROTEIN SCI. 5, 1067-1080 THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED IN THIS ENTRY AND 50 STRUCTURES ARE PRESENTED IN ENTRY 1YUJ. IN THE RESTRAINED REGULARIZED MEAN COORDINATES THE LAST COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING STRUCTURES AND THE MEAN COORDINATE POSITIONS. THE LAST COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. BEST FITTING TO GENERATE THE AVERAGE STRUCTURE IS WITH RESPECT TO RESIDUES 14 - 58 OF THE PROTEIN AND BASE PAIRS 1 - 11 OF THE DNA (RESIDUES 10 - 13 AND 59 - 61 ARE DISORDERED IN SOLUTION). RESIDUE 10 CORRESPONDS TO RESIDUE 319 OF THE NATURAL SEQUENCE. NOTE THE OCCUPANCY FIELD HAS NO MEANING. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' 'X-PLOR (SEE ABOVE)' ? ? 1 refinement 'X-PLOR (SEE ABOVE)' ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 DA OP3 O N N 72 DA P P N N 73 DA OP1 O N N 74 DA OP2 O N N 75 DA "O5'" O N N 76 DA "C5'" C N N 77 DA "C4'" C N R 78 DA "O4'" O N N 79 DA "C3'" C N S 80 DA "O3'" O N N 81 DA "C2'" C N N 82 DA "C1'" C N R 83 DA N9 N Y N 84 DA C8 C Y N 85 DA N7 N Y N 86 DA C5 C Y N 87 DA C6 C Y N 88 DA N6 N N N 89 DA N1 N Y N 90 DA C2 C Y N 91 DA N3 N Y N 92 DA C4 C Y N 93 DA HOP3 H N N 94 DA HOP2 H N N 95 DA "H5'" H N N 96 DA "H5''" H N N 97 DA "H4'" H N N 98 DA "H3'" H N N 99 DA "HO3'" H N N 100 DA "H2'" H N N 101 DA "H2''" H N N 102 DA "H1'" H N N 103 DA H8 H N N 104 DA H61 H N N 105 DA H62 H N N 106 DA H2 H N N 107 DC OP3 O N N 108 DC P P N N 109 DC OP1 O N N 110 DC OP2 O N N 111 DC "O5'" O N N 112 DC "C5'" C N N 113 DC "C4'" C N R 114 DC "O4'" O N N 115 DC "C3'" C N S 116 DC "O3'" O N N 117 DC "C2'" C N N 118 DC "C1'" C N R 119 DC N1 N N N 120 DC C2 C N N 121 DC O2 O N N 122 DC N3 N N N 123 DC C4 C N N 124 DC N4 N N N 125 DC C5 C N N 126 DC C6 C N N 127 DC HOP3 H N N 128 DC HOP2 H N N 129 DC "H5'" H N N 130 DC "H5''" H N N 131 DC "H4'" H N N 132 DC "H3'" H N N 133 DC "HO3'" H N N 134 DC "H2'" H N N 135 DC "H2''" H N N 136 DC "H1'" H N N 137 DC H41 H N N 138 DC H42 H N N 139 DC H5 H N N 140 DC H6 H N N 141 DG OP3 O N N 142 DG P P N N 143 DG OP1 O N N 144 DG OP2 O N N 145 DG "O5'" O N N 146 DG "C5'" C N N 147 DG "C4'" C N R 148 DG "O4'" O N N 149 DG "C3'" C N S 150 DG "O3'" O N N 151 DG "C2'" C N N 152 DG "C1'" C N R 153 DG N9 N Y N 154 DG C8 C Y N 155 DG N7 N Y N 156 DG C5 C Y N 157 DG C6 C N N 158 DG O6 O N N 159 DG N1 N N N 160 DG C2 C N N 161 DG N2 N N N 162 DG N3 N N N 163 DG C4 C Y N 164 DG HOP3 H N N 165 DG HOP2 H N N 166 DG "H5'" H N N 167 DG "H5''" H N N 168 DG "H4'" H N N 169 DG "H3'" H N N 170 DG "HO3'" H N N 171 DG "H2'" H N N 172 DG "H2''" H N N 173 DG "H1'" H N N 174 DG H8 H N N 175 DG H1 H N N 176 DG H21 H N N 177 DG H22 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 GLN N N N N 215 GLN CA C N S 216 GLN C C N N 217 GLN O O N N 218 GLN CB C N N 219 GLN CG C N N 220 GLN CD C N N 221 GLN OE1 O N N 222 GLN NE2 N N N 223 GLN OXT O N N 224 GLN H H N N 225 GLN H2 H N N 226 GLN HA H N N 227 GLN HB2 H N N 228 GLN HB3 H N N 229 GLN HG2 H N N 230 GLN HG3 H N N 231 GLN HE21 H N N 232 GLN HE22 H N N 233 GLN HXT H N N 234 GLU N N N N 235 GLU CA C N S 236 GLU C C N N 237 GLU O O N N 238 GLU CB C N N 239 GLU CG C N N 240 GLU CD C N N 241 GLU OE1 O N N 242 GLU OE2 O N N 243 GLU OXT O N N 244 GLU H H N N 245 GLU H2 H N N 246 GLU HA H N N 247 GLU HB2 H N N 248 GLU HB3 H N N 249 GLU HG2 H N N 250 GLU HG3 H N N 251 GLU HE2 H N N 252 GLU HXT H N N 253 GLY N N N N 254 GLY CA C N N 255 GLY C C N N 256 GLY O O N N 257 GLY OXT O N N 258 GLY H H N N 259 GLY H2 H N N 260 GLY HA2 H N N 261 GLY HA3 H N N 262 GLY HXT H N N 263 HIS N N N N 264 HIS CA C N S 265 HIS C C N N 266 HIS O O N N 267 HIS CB C N N 268 HIS CG C Y N 269 HIS ND1 N Y N 270 HIS CD2 C Y N 271 HIS CE1 C Y N 272 HIS NE2 N Y N 273 HIS OXT O N N 274 HIS H H N N 275 HIS H2 H N N 276 HIS HA H N N 277 HIS HB2 H N N 278 HIS HB3 H N N 279 HIS HD1 H N N 280 HIS HD2 H N N 281 HIS HE1 H N N 282 HIS HE2 H N N 283 HIS HXT H N N 284 ILE N N N N 285 ILE CA C N S 286 ILE C C N N 287 ILE O O N N 288 ILE CB C N S 289 ILE CG1 C N N 290 ILE CG2 C N N 291 ILE CD1 C N N 292 ILE OXT O N N 293 ILE H H N N 294 ILE H2 H N N 295 ILE HA H N N 296 ILE HB H N N 297 ILE HG12 H N N 298 ILE HG13 H N N 299 ILE HG21 H N N 300 ILE HG22 H N N 301 ILE HG23 H N N 302 ILE HD11 H N N 303 ILE HD12 H N N 304 ILE HD13 H N N 305 ILE HXT H N N 306 LEU N N N N 307 LEU CA C N S 308 LEU C C N N 309 LEU O O N N 310 LEU CB C N N 311 LEU CG C N N 312 LEU CD1 C N N 313 LEU CD2 C N N 314 LEU OXT O N N 315 LEU H H N N 316 LEU H2 H N N 317 LEU HA H N N 318 LEU HB2 H N N 319 LEU HB3 H N N 320 LEU HG H N N 321 LEU HD11 H N N 322 LEU HD12 H N N 323 LEU HD13 H N N 324 LEU HD21 H N N 325 LEU HD22 H N N 326 LEU HD23 H N N 327 LEU HXT H N N 328 LYS N N N N 329 LYS CA C N S 330 LYS C C N N 331 LYS O O N N 332 LYS CB C N N 333 LYS CG C N N 334 LYS CD C N N 335 LYS CE C N N 336 LYS NZ N N N 337 LYS OXT O N N 338 LYS H H N N 339 LYS H2 H N N 340 LYS HA H N N 341 LYS HB2 H N N 342 LYS HB3 H N N 343 LYS HG2 H N N 344 LYS HG3 H N N 345 LYS HD2 H N N 346 LYS HD3 H N N 347 LYS HE2 H N N 348 LYS HE3 H N N 349 LYS HZ1 H N N 350 LYS HZ2 H N N 351 LYS HZ3 H N N 352 LYS HXT H N N 353 PHE N N N N 354 PHE CA C N S 355 PHE C C N N 356 PHE O O N N 357 PHE CB C N N 358 PHE CG C Y N 359 PHE CD1 C Y N 360 PHE CD2 C Y N 361 PHE CE1 C Y N 362 PHE CE2 C Y N 363 PHE CZ C Y N 364 PHE OXT O N N 365 PHE H H N N 366 PHE H2 H N N 367 PHE HA H N N 368 PHE HB2 H N N 369 PHE HB3 H N N 370 PHE HD1 H N N 371 PHE HD2 H N N 372 PHE HE1 H N N 373 PHE HE2 H N N 374 PHE HZ H N N 375 PHE HXT H N N 376 PRO N N N N 377 PRO CA C N S 378 PRO C C N N 379 PRO O O N N 380 PRO CB C N N 381 PRO CG C N N 382 PRO CD C N N 383 PRO OXT O N N 384 PRO H H N N 385 PRO HA H N N 386 PRO HB2 H N N 387 PRO HB3 H N N 388 PRO HG2 H N N 389 PRO HG3 H N N 390 PRO HD2 H N N 391 PRO HD3 H N N 392 PRO HXT H N N 393 SER N N N N 394 SER CA C N S 395 SER C C N N 396 SER O O N N 397 SER CB C N N 398 SER OG O N N 399 SER OXT O N N 400 SER H H N N 401 SER H2 H N N 402 SER HA H N N 403 SER HB2 H N N 404 SER HB3 H N N 405 SER HG H N N 406 SER HXT H N N 407 THR N N N N 408 THR CA C N S 409 THR C C N N 410 THR O O N N 411 THR CB C N R 412 THR OG1 O N N 413 THR CG2 C N N 414 THR OXT O N N 415 THR H H N N 416 THR H2 H N N 417 THR HA H N N 418 THR HB H N N 419 THR HG1 H N N 420 THR HG21 H N N 421 THR HG22 H N N 422 THR HG23 H N N 423 THR HXT H N N 424 TYR N N N N 425 TYR CA C N S 426 TYR C C N N 427 TYR O O N N 428 TYR CB C N N 429 TYR CG C Y N 430 TYR CD1 C Y N 431 TYR CD2 C Y N 432 TYR CE1 C Y N 433 TYR CE2 C Y N 434 TYR CZ C Y N 435 TYR OH O N N 436 TYR OXT O N N 437 TYR H H N N 438 TYR H2 H N N 439 TYR HA H N N 440 TYR HB2 H N N 441 TYR HB3 H N N 442 TYR HD1 H N N 443 TYR HD2 H N N 444 TYR HE1 H N N 445 TYR HE2 H N N 446 TYR HH H N N 447 TYR HXT H N N 448 VAL N N N N 449 VAL CA C N S 450 VAL C C N N 451 VAL O O N N 452 VAL CB C N N 453 VAL CG1 C N N 454 VAL CG2 C N N 455 VAL OXT O N N 456 VAL H H N N 457 VAL H2 H N N 458 VAL HA H N N 459 VAL HB H N N 460 VAL HG11 H N N 461 VAL HG12 H N N 462 VAL HG13 H N N 463 VAL HG21 H N N 464 VAL HG22 H N N 465 VAL HG23 H N N 466 VAL HXT H N N 467 ZN ZN ZN N N 468 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 DA OP3 P sing N N 68 DA OP3 HOP3 sing N N 69 DA P OP1 doub N N 70 DA P OP2 sing N N 71 DA P "O5'" sing N N 72 DA OP2 HOP2 sing N N 73 DA "O5'" "C5'" sing N N 74 DA "C5'" "C4'" sing N N 75 DA "C5'" "H5'" sing N N 76 DA "C5'" "H5''" sing N N 77 DA "C4'" "O4'" sing N N 78 DA "C4'" "C3'" sing N N 79 DA "C4'" "H4'" sing N N 80 DA "O4'" "C1'" sing N N 81 DA "C3'" "O3'" sing N N 82 DA "C3'" "C2'" sing N N 83 DA "C3'" "H3'" sing N N 84 DA "O3'" "HO3'" sing N N 85 DA "C2'" "C1'" sing N N 86 DA "C2'" "H2'" sing N N 87 DA "C2'" "H2''" sing N N 88 DA "C1'" N9 sing N N 89 DA "C1'" "H1'" sing N N 90 DA N9 C8 sing Y N 91 DA N9 C4 sing Y N 92 DA C8 N7 doub Y N 93 DA C8 H8 sing N N 94 DA N7 C5 sing Y N 95 DA C5 C6 sing Y N 96 DA C5 C4 doub Y N 97 DA C6 N6 sing N N 98 DA C6 N1 doub Y N 99 DA N6 H61 sing N N 100 DA N6 H62 sing N N 101 DA N1 C2 sing Y N 102 DA C2 N3 doub Y N 103 DA C2 H2 sing N N 104 DA N3 C4 sing Y N 105 DC OP3 P sing N N 106 DC OP3 HOP3 sing N N 107 DC P OP1 doub N N 108 DC P OP2 sing N N 109 DC P "O5'" sing N N 110 DC OP2 HOP2 sing N N 111 DC "O5'" "C5'" sing N N 112 DC "C5'" "C4'" sing N N 113 DC "C5'" "H5'" sing N N 114 DC "C5'" "H5''" sing N N 115 DC "C4'" "O4'" sing N N 116 DC "C4'" "C3'" sing N N 117 DC "C4'" "H4'" sing N N 118 DC "O4'" "C1'" sing N N 119 DC "C3'" "O3'" sing N N 120 DC "C3'" "C2'" sing N N 121 DC "C3'" "H3'" sing N N 122 DC "O3'" "HO3'" sing N N 123 DC "C2'" "C1'" sing N N 124 DC "C2'" "H2'" sing N N 125 DC "C2'" "H2''" sing N N 126 DC "C1'" N1 sing N N 127 DC "C1'" "H1'" sing N N 128 DC N1 C2 sing N N 129 DC N1 C6 sing N N 130 DC C2 O2 doub N N 131 DC C2 N3 sing N N 132 DC N3 C4 doub N N 133 DC C4 N4 sing N N 134 DC C4 C5 sing N N 135 DC N4 H41 sing N N 136 DC N4 H42 sing N N 137 DC C5 C6 doub N N 138 DC C5 H5 sing N N 139 DC C6 H6 sing N N 140 DG OP3 P sing N N 141 DG OP3 HOP3 sing N N 142 DG P OP1 doub N N 143 DG P OP2 sing N N 144 DG P "O5'" sing N N 145 DG OP2 HOP2 sing N N 146 DG "O5'" "C5'" sing N N 147 DG "C5'" "C4'" sing N N 148 DG "C5'" "H5'" sing N N 149 DG "C5'" "H5''" sing N N 150 DG "C4'" "O4'" sing N N 151 DG "C4'" "C3'" sing N N 152 DG "C4'" "H4'" sing N N 153 DG "O4'" "C1'" sing N N 154 DG "C3'" "O3'" sing N N 155 DG "C3'" "C2'" sing N N 156 DG "C3'" "H3'" sing N N 157 DG "O3'" "HO3'" sing N N 158 DG "C2'" "C1'" sing N N 159 DG "C2'" "H2'" sing N N 160 DG "C2'" "H2''" sing N N 161 DG "C1'" N9 sing N N 162 DG "C1'" "H1'" sing N N 163 DG N9 C8 sing Y N 164 DG N9 C4 sing Y N 165 DG C8 N7 doub Y N 166 DG C8 H8 sing N N 167 DG N7 C5 sing Y N 168 DG C5 C6 sing N N 169 DG C5 C4 doub Y N 170 DG C6 O6 doub N N 171 DG C6 N1 sing N N 172 DG N1 C2 sing N N 173 DG N1 H1 sing N N 174 DG C2 N2 sing N N 175 DG C2 N3 doub N N 176 DG N2 H21 sing N N 177 DG N2 H22 sing N N 178 DG N3 C4 sing N N 179 DT OP3 P sing N N 180 DT OP3 HOP3 sing N N 181 DT P OP1 doub N N 182 DT P OP2 sing N N 183 DT P "O5'" sing N N 184 DT OP2 HOP2 sing N N 185 DT "O5'" "C5'" sing N N 186 DT "C5'" "C4'" sing N N 187 DT "C5'" "H5'" sing N N 188 DT "C5'" "H5''" sing N N 189 DT "C4'" "O4'" sing N N 190 DT "C4'" "C3'" sing N N 191 DT "C4'" "H4'" sing N N 192 DT "O4'" "C1'" sing N N 193 DT "C3'" "O3'" sing N N 194 DT "C3'" "C2'" sing N N 195 DT "C3'" "H3'" sing N N 196 DT "O3'" "HO3'" sing N N 197 DT "C2'" "C1'" sing N N 198 DT "C2'" "H2'" sing N N 199 DT "C2'" "H2''" sing N N 200 DT "C1'" N1 sing N N 201 DT "C1'" "H1'" sing N N 202 DT N1 C2 sing N N 203 DT N1 C6 sing N N 204 DT C2 O2 doub N N 205 DT C2 N3 sing N N 206 DT N3 C4 sing N N 207 DT N3 H3 sing N N 208 DT C4 O4 doub N N 209 DT C4 C5 sing N N 210 DT C5 C7 sing N N 211 DT C5 C6 doub N N 212 DT C7 H71 sing N N 213 DT C7 H72 sing N N 214 DT C7 H73 sing N N 215 DT C6 H6 sing N N 216 GLN N CA sing N N 217 GLN N H sing N N 218 GLN N H2 sing N N 219 GLN CA C sing N N 220 GLN CA CB sing N N 221 GLN CA HA sing N N 222 GLN C O doub N N 223 GLN C OXT sing N N 224 GLN CB CG sing N N 225 GLN CB HB2 sing N N 226 GLN CB HB3 sing N N 227 GLN CG CD sing N N 228 GLN CG HG2 sing N N 229 GLN CG HG3 sing N N 230 GLN CD OE1 doub N N 231 GLN CD NE2 sing N N 232 GLN NE2 HE21 sing N N 233 GLN NE2 HE22 sing N N 234 GLN OXT HXT sing N N 235 GLU N CA sing N N 236 GLU N H sing N N 237 GLU N H2 sing N N 238 GLU CA C sing N N 239 GLU CA CB sing N N 240 GLU CA HA sing N N 241 GLU C O doub N N 242 GLU C OXT sing N N 243 GLU CB CG sing N N 244 GLU CB HB2 sing N N 245 GLU CB HB3 sing N N 246 GLU CG CD sing N N 247 GLU CG HG2 sing N N 248 GLU CG HG3 sing N N 249 GLU CD OE1 doub N N 250 GLU CD OE2 sing N N 251 GLU OE2 HE2 sing N N 252 GLU OXT HXT sing N N 253 GLY N CA sing N N 254 GLY N H sing N N 255 GLY N H2 sing N N 256 GLY CA C sing N N 257 GLY CA HA2 sing N N 258 GLY CA HA3 sing N N 259 GLY C O doub N N 260 GLY C OXT sing N N 261 GLY OXT HXT sing N N 262 HIS N CA sing N N 263 HIS N H sing N N 264 HIS N H2 sing N N 265 HIS CA C sing N N 266 HIS CA CB sing N N 267 HIS CA HA sing N N 268 HIS C O doub N N 269 HIS C OXT sing N N 270 HIS CB CG sing N N 271 HIS CB HB2 sing N N 272 HIS CB HB3 sing N N 273 HIS CG ND1 sing Y N 274 HIS CG CD2 doub Y N 275 HIS ND1 CE1 doub Y N 276 HIS ND1 HD1 sing N N 277 HIS CD2 NE2 sing Y N 278 HIS CD2 HD2 sing N N 279 HIS CE1 NE2 sing Y N 280 HIS CE1 HE1 sing N N 281 HIS NE2 HE2 sing N N 282 HIS OXT HXT sing N N 283 ILE N CA sing N N 284 ILE N H sing N N 285 ILE N H2 sing N N 286 ILE CA C sing N N 287 ILE CA CB sing N N 288 ILE CA HA sing N N 289 ILE C O doub N N 290 ILE C OXT sing N N 291 ILE CB CG1 sing N N 292 ILE CB CG2 sing N N 293 ILE CB HB sing N N 294 ILE CG1 CD1 sing N N 295 ILE CG1 HG12 sing N N 296 ILE CG1 HG13 sing N N 297 ILE CG2 HG21 sing N N 298 ILE CG2 HG22 sing N N 299 ILE CG2 HG23 sing N N 300 ILE CD1 HD11 sing N N 301 ILE CD1 HD12 sing N N 302 ILE CD1 HD13 sing N N 303 ILE OXT HXT sing N N 304 LEU N CA sing N N 305 LEU N H sing N N 306 LEU N H2 sing N N 307 LEU CA C sing N N 308 LEU CA CB sing N N 309 LEU CA HA sing N N 310 LEU C O doub N N 311 LEU C OXT sing N N 312 LEU CB CG sing N N 313 LEU CB HB2 sing N N 314 LEU CB HB3 sing N N 315 LEU CG CD1 sing N N 316 LEU CG CD2 sing N N 317 LEU CG HG sing N N 318 LEU CD1 HD11 sing N N 319 LEU CD1 HD12 sing N N 320 LEU CD1 HD13 sing N N 321 LEU CD2 HD21 sing N N 322 LEU CD2 HD22 sing N N 323 LEU CD2 HD23 sing N N 324 LEU OXT HXT sing N N 325 LYS N CA sing N N 326 LYS N H sing N N 327 LYS N H2 sing N N 328 LYS CA C sing N N 329 LYS CA CB sing N N 330 LYS CA HA sing N N 331 LYS C O doub N N 332 LYS C OXT sing N N 333 LYS CB CG sing N N 334 LYS CB HB2 sing N N 335 LYS CB HB3 sing N N 336 LYS CG CD sing N N 337 LYS CG HG2 sing N N 338 LYS CG HG3 sing N N 339 LYS CD CE sing N N 340 LYS CD HD2 sing N N 341 LYS CD HD3 sing N N 342 LYS CE NZ sing N N 343 LYS CE HE2 sing N N 344 LYS CE HE3 sing N N 345 LYS NZ HZ1 sing N N 346 LYS NZ HZ2 sing N N 347 LYS NZ HZ3 sing N N 348 LYS OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 VAL N CA sing N N 443 VAL N H sing N N 444 VAL N H2 sing N N 445 VAL CA C sing N N 446 VAL CA CB sing N N 447 VAL CA HA sing N N 448 VAL C O doub N N 449 VAL C OXT sing N N 450 VAL CB CG1 sing N N 451 VAL CB CG2 sing N N 452 VAL CB HB sing N N 453 VAL CG1 HG11 sing N N 454 VAL CG1 HG12 sing N N 455 VAL CG1 HG13 sing N N 456 VAL CG2 HG21 sing N N 457 VAL CG2 HG22 sing N N 458 VAL CG2 HG23 sing N N 459 VAL OXT HXT sing N N 460 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1YUI 'double helix' 1YUI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 11 1_555 -0.253 -0.087 0.008 0.251 -0.002 -1.538 1 B_DG101:DC122_C B 101 ? C 122 ? 19 1 1 A DC 2 1_555 B DG 10 1_555 0.566 -0.254 -0.005 3.258 -3.367 -4.259 2 B_DC102:DG121_C B 102 ? C 121 ? 19 1 1 A DC 3 1_555 B DG 9 1_555 -0.067 -0.015 -0.021 14.535 -13.276 3.061 3 B_DC103:DG120_C B 103 ? C 120 ? 19 1 1 A DG 4 1_555 B DC 8 1_555 -0.053 -0.155 -0.730 1.234 -4.368 3.799 4 B_DG104:DC119_C B 104 ? C 119 ? 19 1 1 A DA 5 1_555 B DT 7 1_555 0.264 -0.111 -0.534 15.663 -8.308 5.158 5 B_DA105:DT118_C B 105 ? C 118 ? 20 1 1 A DG 6 1_555 B DC 6 1_555 -0.538 -0.146 0.276 11.249 -13.391 5.474 6 B_DG106:DC117_C B 106 ? C 117 ? 19 1 1 A DA 7 1_555 B DT 5 1_555 -0.145 -0.084 -0.218 11.801 -16.773 7.032 7 B_DA107:DT116_C B 107 ? C 116 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 -0.065 -0.380 -1.356 -16.312 -15.461 0.475 8 B_DG108:DC115_C B 108 ? C 115 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 -0.525 0.029 -0.029 -10.863 -5.357 -1.873 9 B_DT109:DA114_C B 109 ? C 114 ? 20 1 1 A DA 10 1_555 B DT 2 1_555 0.176 -0.038 0.270 7.332 -5.411 -2.150 10 B_DA110:DT113_C B 110 ? C 113 ? 20 1 1 A DC 11 1_555 B DG 1 1_555 -0.174 -0.028 -0.055 0.297 0.906 2.143 11 B_DC111:DG112_C B 111 ? C 112 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 11 1_555 A DC 2 1_555 B DG 10 1_555 -0.049 0.861 4.204 0.468 -8.634 36.288 2.785 0.155 3.904 -13.625 -0.739 37.270 1 BB_DG101DC102:DG121DC122_CC B 101 ? C 122 ? B 102 ? C 121 ? 1 A DC 2 1_555 B DG 10 1_555 A DC 3 1_555 B DG 9 1_555 0.701 -0.226 3.170 2.616 -6.321 32.504 0.648 -0.795 3.201 -11.139 -4.611 33.197 2 BB_DC102DC103:DG120DG121_CC B 102 ? C 121 ? B 103 ? C 120 ? 1 A DC 3 1_555 B DG 9 1_555 A DG 4 1_555 B DC 8 1_555 -0.136 0.342 4.237 1.638 8.707 35.479 -1.027 0.513 4.192 14.019 -2.637 36.534 3 BB_DC103DG104:DC119DG120_CC B 103 ? C 120 ? B 104 ? C 119 ? 1 A DG 4 1_555 B DC 8 1_555 A DA 5 1_555 B DT 7 1_555 0.148 0.194 3.058 -1.351 0.759 31.502 0.225 -0.508 3.053 1.398 2.487 31.539 4 BB_DG104DA105:DT118DC119_CC B 104 ? C 119 ? B 105 ? C 118 ? 1 A DA 5 1_555 B DT 7 1_555 A DG 6 1_555 B DC 6 1_555 -0.831 -0.254 3.999 -5.131 -0.418 36.058 -0.334 0.446 4.077 -0.671 8.237 36.412 5 BB_DA105DG106:DC117DT118_CC B 105 ? C 118 ? B 106 ? C 117 ? 1 A DG 6 1_555 B DC 6 1_555 A DA 7 1_555 B DT 5 1_555 0.074 0.532 3.751 3.680 -1.957 35.833 1.177 0.477 3.707 -3.168 -5.956 36.067 6 BB_DG106DA107:DT116DC117_CC B 106 ? C 117 ? B 107 ? C 116 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 -0.663 0.703 4.823 2.495 20.520 34.461 -2.596 1.409 4.484 31.388 -3.817 40.023 7 BB_DA107DG108:DC115DT116_CC B 107 ? C 116 ? B 108 ? C 115 ? 1 A DG 8 1_555 B DC 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.040 -0.124 3.488 -5.541 -8.765 34.989 1.108 -0.762 3.388 -14.197 8.975 36.447 8 BB_DG108DT109:DA114DC115_CC B 108 ? C 115 ? B 109 ? C 114 ? 1 A DT 9 1_555 B DA 3 1_555 A DA 10 1_555 B DT 2 1_555 -0.215 0.633 2.955 -1.765 1.389 36.517 0.834 0.122 2.983 2.214 2.814 36.583 9 BB_DT109DA110:DT113DA114_CC B 109 ? C 114 ? B 110 ? C 113 ? 1 A DA 10 1_555 B DT 2 1_555 A DC 11 1_555 B DG 1 1_555 0.630 0.241 4.534 -0.218 -7.593 30.023 2.474 -1.238 4.340 -14.370 0.413 30.948 10 BB_DA110DC111:DG112DT113_CC B 110 ? C 113 ? B 111 ? C 112 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AMX500 Bruker 500 2 AMX600 Bruker 600 # _atom_sites.entry_id 1YUI _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_